Sequence of DPV Chrysanthemum stem necrosis virus

Chrysanthemum stem necrosis virus N gene for nucleocapsid protein, complete cds, isolate: GnCh07S.

ACC No: AB600871

Dated: 2011-09-28 | Length: 783 | CRC: -1069413918

                
ID   AB600871; SV 1; linear; genomic RNA; STD; VRL; 783 BP.
XX
AC   AB600871;
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DT   18-NOV-2010 (Rel. 106, Created)
DT   28-SEP-2011 (Rel. 110, Last updated, Version 2)
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DE   Chrysanthemum stem necrosis virus N gene for nucleocapsid protein, complete
DE   cds, isolate: GnCh07S.
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KW   .
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OS   Chrysanthemum stem necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-783
RA   Nagai N., Okuda M., Matsuura S., Okuda S., Furuya N., Tsuchiya K.,
RA   Takeshita M.;
RT   ;
RL   Submitted (15-NOV-2010) to the INSDC.
RL   Contact:Minoru Takeshita Kyushu University, Laboratory of Plant Pathology;
RL   6-10-1 Hakozaki Higashi-ku, Fukuoka, Fukuoka 812-8581, Japan E-mail
RL   :minorutk@agr.kyushu-u.ac.jp
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RN   [2]
RA   Takeshita M., Nagai N., Okuda M., Matsuura S., Okuda S., Furuya N.,
RA   Tsuchiya K.;
RT   "Molecular and biological characterization of Chrysanthemum stem necrosis
RT   virus isolates from distinct regions in Japan";
RL   Eur. J. Plant Pathol. 131:9-14(2011).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .783
FT                   /organism="Chrysanthemum stem necrosis virus"
FT                   /segment="S RNA"
FT                   /isolate="GnCh07S"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Gunma"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:83871"
FT   CDS             complement(1. .783)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:E3WH92"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:E3WH92"
FT                   /protein_id="BAJ33509.1"
FT                   /translation="MSKVKLTKENIVALLTQAGEVEFEEEQNQIAFNSQSFCNDNLDQI
FT                   KNMNLISCLTFLKNRQSIMKVVKQSDFTFGKITIKKNSDRIGPNDMTFRRLDSLIRVKL
FT                   IGRTKSDEDLNTIKSKIASHPLVQAYGLSLNDAKSVRLAIMLGGSLPLIASVESFEMIS
FT                   VVLAIYQDSKHKELGIDEKKYDTKEALGKVCTVLKSKGFAIDEQQMEKGKEYANILKAC
FT                   DPRMKGAIALDHYSDSLNKFYEMFGVQKGSKLIPKDLV"
XX
SQ   Sequence 783 BP; 224 A; 161 C; 119 G; 279 T; 0 other;

ab600871 Length: 783  28-SEP-2011  Type: N  Check: 4495  ..

       1  ttaaacaaga tctttaggaa taagtttaga tcccttttga actccaaaca
      51  tctcatagaa cttgttgaga gaatcactgt aatgatccaa agcaatagct
     101  cctttcattc ttgggtcaca agctttgaga atgtttgcat attcctttcc
     151  tttttccatc tgttgttcat caatagcaaa tcctttactc tttaaaacag
     201  tgcaaacttt ccctaaagct tctttagtat catatttctt ttcatctatt
     251  ccaagctctt tgtgctttga atcctggtag atagctagta caacgctaat
     301  catttcaaag ctctcaactg aagcaatgag agggagacta cctccaagca
     351  ttatagccaa tctaacagac tttgcatcat tcaagctaag cccatatgcc
     401  tgaactagag ggtgagaagc aatctttgat ttgatagtgt ttagatcttc
     451  atcactctta gttcttccaa taagcttgac tcttatcaag ctatccaatc
     501  tcctgaaagt catgtcattt ggtccaatcc tatcagagtt ctttttgata
     551  gtgattttgc caaaagtgaa atcactttgt tttacaacct tcattatgct
     601  ttgacgattc ttaagaaatg tcaagcatga tattaaattc atgtttttga
     651  tctgatccag gttatcattg cagaaacttt gggagttgaa tgcaatttgg
     701  ttctgttctt cctcaaattc aacttctcca gcttgcgtca gcaaagcaac
     751  aatgttttcc tttgtaagct taactttaga cat