Sequence of DPV Chrysanthemum stem necrosis virus

Chrysanthemum stem necrosis virus N gene for nucleocapsid protein, complete cds, isolate: TcCh07A.

ACC No: AB600872

Dated: 2011-09-28 | Length: 783 | CRC: 2109647970

                
ID   AB600872; SV 1; linear; genomic RNA; STD; VRL; 783 BP.
XX
AC   AB600872;
XX
DT   18-NOV-2010 (Rel. 106, Created)
DT   28-SEP-2011 (Rel. 110, Last updated, Version 2)
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DE   Chrysanthemum stem necrosis virus N gene for nucleocapsid protein, complete
DE   cds, isolate: TcCh07A.
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KW   .
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OS   Chrysanthemum stem necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-783
RA   Nagai N., Okuda M., Matsuura S., Okuda S., Furuya N., Tsuchiya K.,
RA   Takeshita M.;
RT   ;
RL   Submitted (15-NOV-2010) to the INSDC.
RL   Contact:Minoru Takeshita Kyushu University, Laboratory of Plant Pathology;
RL   6-10-1 Hakozaki Higashi-ku, Fukuoka, Fukuoka 812-8581, Japan E-mail
RL   :minorutk@agr.kyushu-u.ac.jp
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RN   [2]
RA   Takeshita M., Nagai N., Okuda M., Matsuura S., Okuda S., Furuya N.,
RA   Tsuchiya K.;
RT   "Molecular and biological characterization of Chrysanthemum stem necrosis
RT   virus isolates from distinct regions in Japan";
RL   Eur. J. Plant Pathol. 131:9-14(2011).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .783
FT                   /organism="Chrysanthemum stem necrosis virus"
FT                   /segment="S RNA"
FT                   /isolate="TcCh07A"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Tochigi"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:83871"
FT   CDS             complement(1. .783)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:E3WH93"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:E3WH93"
FT                   /protein_id="BAJ33510.1"
FT                   /translation="MSKVKLTKENIVALLTQAGEVEFEEEQNQIAFNFQSFCNDNLDQI
FT                   KNMNLISCLTFLKNRQSITKVVKQSDFTFGKITIKKNPDRIGPNDMTFRRLDSLIRVKL
FT                   IGRTKSDEDLNTIKSKIASHPLVQAYGLSLNDAKSVRLAIMLGGSLPLIASVESFEMIS
FT                   VVLATYQDSKHKELGIDEKKYDTKEALGKVCTVLKSKGFAIDEQQMEKGKEYANILKAC
FT                   DPRMKGAIALDHYSDSLNKFYEMFGVQKGSKLIPKDLV"
XX
SQ   Sequence 783 BP; 219 A; 163 C; 124 G; 277 T; 0 other;

ab600872 Length: 783  28-SEP-2011  Type: N  Check: 4971  ..

       1  ttaaacaaga tctttaggaa taagtttaga tcccttttga actccaaaca
      51  tctcatagaa cttgttgaga gaatcactgt aatgatccaa agcaatggct
     101  cctttcattc ttgggtcaca agccttgaga atatttgcat attcctttcc
     151  tttttccatc tgttgttcgt caatagcaaa tcctttgctc tttaaaacag
     201  tgcaaacttt ccccaaagct tctttagtat catatttctt ctcatctatt
     251  ccaagctctt tgtgctttga atcctggtag gtagctagta caacgctaat
     301  catttcgaag ctctcaactg aagcaatgag agggagacta cctccaagca
     351  ttatagccaa tctaacagac tttgcatcat tcaagctaag cccgtatgcc
     401  tgaactagag ggtgagaagc aatctttgat ttgatagtgt ttagatcttc
     451  atcactctta gttcttccaa taagcttgac tcttatcaag ctatccaatc
     501  tcctgaaagt catgtcattt ggtccaatcc tatcagggtt ctttttgata
     551  gtgattttac caaaagtgaa atcactttgt tttacaacct tcgttatgct
     601  ttgacgattc ttaagaaatg ttaaacatga tattaagttc atgtttttga
     651  tctgatccag gttatcattg cagaaacttt ggaagttgaa tgcaatttgg
     701  ttctgttctt cctcaaattc aacttctcca gcttgcgtca gcaaagcaac
     751  aatgttttcc tttgtaagct taactttaga cat