Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus DNA, segment A, complete sequence, host: Cucumis sativus.
ACC No: AB613825
Dated: 2011-10-18 | Length: 2739 | CRC: -837197191
ID AB613825; SV 1; circular; genomic DNA; STD; VRL; 2739 BP.
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AC AB613825;
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DT 04-OCT-2011 (Rel. 110, Created)
DT 18-OCT-2011 (Rel. 110, Last updated, Version 2)
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DE Tomato leaf curl New Delhi virus DNA, segment A, complete sequence, host:
DE Cucumis sativus.
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KW .
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OS Tomato leaf curl New Delhi virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2739
RA Mizutani T., Daryono B.S., Natsuaki K.T., Ikegami M.;
RT ;
RL Submitted (09-FEB-2011) to the INSDC.
RL Contact:Tadasuke Mizutani Tokyo University of Agriculture, Graduate School
RL of Agriculture, Department of International Agricultural Development,
RL Laboratory of Tropical Plant Protection; Sakuragaoka, 1-1-1, Setagaya,
RL Tokyo 156-8502, Japan
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RN [2]
RC DOI:10.1094/PDIS-03-11-0196
RA Mizutani T., Daryono B.S., Ikegami M., Natsuaki K.T.;
RT "First Report of Tomato leaf curl New Delhi virus Infecting Cucumber in
RT Central Java, Indonesia";
RL Plant Dis. 95:1485-1485(2011).
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FH Key Location/Qualifiers
FH
FT source 1. .2739
FT /organism="Tomato leaf curl New Delhi virus"
FT /segment="A"
FT /host="Cucumis sativus"
FT /strain="ToLCNDV-Indonesia"
FT /isolate="[Indonesia:Java:Cucumber:2008]"
FT /mol_type="genomic DNA"
FT /country="Indonesia:Central Java, Klaten"
FT /collection_date="Aug-2008"
FT /db_xref="taxon:223347"
FT CDS 120. .458
FT /codon_start=1
FT /transl_table=1
FT /gene="AV2"
FT /product="movement protein"
FT /protein_id="BAL03045.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL
FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKRKGLDQQADEQ
FT KTQNVQNV"
FT CDS 280. .1050
FT /codon_start=1
FT /transl_table=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="BAL03046.1"
FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKGRAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGTPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(1047. .1457)
FT /codon_start=1
FT /transl_table=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /protein_id="BAL03047.1"
FT /translation="MITDSRTGEYITADRAENGVYIWKIRNPLYFKILKHDTRPFLTQH
FT DIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPPIGIFLRVFKTQVLKYLDMLGVIGI
FT YNVIRAVYHVLDNVLEETIDVCTSHDIKLDIY"
FT CDS complement(1177. .1596)
FT /codon_start=1
FT /transl_table=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="BAL03048.1"
FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLQCGCTYYISIN
FT CHDHGFTHRGVHHCGSSREWRIYLENSKSPVFQNFETRHQALPNTARHNQDSNTVQPQP
FT AESPGTSQVFSNFSNLDGLTPSDWDFLASLQNPGP"
FT CDS complement(1499. .2584)
FT /codon_start=1
FT /transl_table=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="BAL03049.1"
FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK
FT ICRELHEDGSPHIHVLIQFEGKFQCKNYRFFDLVSPSRSAHFHPNIQGAKSASDVKTYI
FT DKDGDVIEWGLFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELGTKDYVLQFH
FT NLTNNLDRIFQPPSQVYASPFSISSFDRVPPQLVDWVSSNVVCASARPLRPISIVVEGD
FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNSALKQWAIKNAVFITLEEPL
FT YSCRENIAPTEEEEEHSQEAS"
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SQ Sequence 2739 BP; 749 A; 586 C; 615 G; 789 T; 0 other;
ab613825 Length: 2739 18-OCT-2011 Type: N Check: 5562 ..
1 accgaatggc cgcgcaaatt tttatgtggg ccctcaacta atgaaattga
51 cgctgcaatg cttagttagt gcggggggac cattaaatag acttgctcac
101 caagtttgga tccacaaaca tgtgggatcc attattgcac gaatttcccg
151 aaagcgttca tggtctaagg tgcatgctag ctgtgaaata tctgcaagag
201 atagaaaaga actattcccc agacacagtt gggtacgatc ttgtccgaga
251 tctcatcctt gtccttcgag cgaagaacta tggcgaagcg accagcagat
301 atcatcattt caacgcccgc atcgaaggta cgccgacgtc tcaacttcga
351 cagcccctat ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag
401 gaagggcttg gaccaacagg ccgatgaaca gaaaacccag aatgtacaga
451 atgtatagaa gtcccgacgt tccaaggggc tgtgaaggcc cttgtaaggt
501 tcagtctttc gaatctaggc acgatgtatc gcacattggc aaggtcatgt
551 gtgttagtga cgttacacga ggaactggac tcacacatcg cgtagggaag
601 cgattctgtg tgaaatccgt ctatgtgctg gggaagatat ggatggatga
651 aaacatcaag acgaaaaacc atactaacag tgtcatgttt tttttagttc
701 gtgatcgtcg tcctacagga acaccccaag atttcgggga agtttttaac
751 atgtttgaca atgaaccgag cacagcaacg gtgaagaaca tgcatcgtga
801 tcgttatcag gtgttacgga agtggcatgc gactgtgacg ggaggaactt
851 atgcatcgag ggagcaagca ttagttagaa agtttgttag ggttaataat
901 tatgttgttt ataatcaaca agaggccggc aagtatgaaa atcatactga
951 aaacgcttta atgttgtata tggcctgtac tcacgcatca aatcctgtat
1001 atgctacttt gaaaatccgg atctatttct atgattcggt aacaaattaa
1051 taaatatcga gctttatatc atgtgaagtg catacatcaa tcgtctcttc
1101 caaaacatta tccaagacat gataaactgc ccttattaca ttataaattc
1151 ctatcacacc caacatatcc aggtacttaa ggacctgggt tttgaagact
1201 cgcaagaaaa tcccaatcgg agggcgtaag cccgtccaga tttgaaaagt
1251 tagaaaacac ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact
1301 gtatttgaat cttgattatg tcgtgctgtg ttaggaaggg cctggtgtcg
1351 tgtttcaaaa ttttgaaata caggggattt cgaattttcc agatatatac
1401 gccattctct gctcgatccg cagtgatgta ctcccctgtg cgtgaatccg
1451 tgatcatggc agttgattga tatgtaatac gtgcacccac actgcagatc
1501 aactcgcctc ctgcgaatgc tcttcttctt cttctgtggg agcgatgttt
1551 tcgcgacagg aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt
1601 gattgcccac tgcttcagtg ctgaattttt ttcttcatcc agatattcct
1651 tatagctgct atttggacct ttattgcaca ggaagatagt gggaattcct
1701 cctttaatca tgacaggctt tccgtacttc gtgttgcttt gccagtcacg
1751 ctgggccccc atgaattctt taaagtgctt taggtagtgc ggatcaacgt
1801 catcaatgac gttgtaccat gcatcattgc tatacacctt tgggctgaga
1851 tctagatgtc cacacaagta attgtgtggt cctaagcacc gtgcccacat
1901 tgttttcccc gttctactat caccctctac tactatgctt atgggtctta
1951 aaggccgcgc agaggcacac acaacattcg acgaaaccca atcgacgagt
2001 tgaggaggaa ctctgtcgaa ggatgaaatt gaaaatggag acgcataaac
2051 ctgagaagga ggttgaaaaa tgcgatctaa attattagtt aaattatgaa
2101 actgcaagac ataatctttt gtgcctaatt cctttaacac tttcaacgca
2151 tcttctttat tccccgtgtt aatcgcctta gcatatgcat cgttggccgt
2201 ctgctgacca ccacgagcag atcgtccatc gatctggaac agaccccatt
2251 ctataacatc tccgtctttg tcgatgtatg ttttgacatc tgacgctgat
2301 ttagcaccct gaatgttcgg atggaaatgt gctgaccgac ttggggaaac
2351 caagtcgaag aatctgtaat ttttgcactg aaatttccct tcgaattgga
2401 tgagaacatg gatatgcgga gacccatcct catgaagttc ccgacatatt
2451 ttgatgaatt tcttcgcagt cggggtttct agggtctgca attgggaaag
2501 tgcctcttct ttagttagcg aacactttgg atatgtgagg aaatagtttt
2551 tggcatctat tctgaaacga cgtggaggag ccatgaaaat tgtcgttttg
2601 attcagcgtc cctcaacttc ctctatgtaa ttggcgtctg gcgtcccata
2651 tataggttgg acgctaaatg gcagaattgt aatttttaaa agcaaataac
2701 tttaattcaa aatcgtcata gcggccattc gttaatatt