Sequence of DPV Carrizal virus

Carrizal virus gene for nucleocapsid protein, complete cds, isolate: 26/2006.

ACC No: AB620103

Dated: 2011-03-25 | Length: 1980 | CRC: -817779149

                
ID   AB620103; SV 1; linear; viral cRNA; STD; VRL; 1980 BP.
XX
AC   AB620103;
XX
DT   25-MAR-2011 (Rel. 108, Created)
DT   25-MAR-2011 (Rel. 108, Last updated, Version 1)
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DE   Carrizal virus gene for nucleocapsid protein, complete cds, isolate:
DE   26/2006.
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KW   .
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OS   Carrizal virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC   unclassified Hantavirus.
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RN   [1]
RP   1-1980
RA   Kariwa H., Saasa N., Sanchez-Hernandez C., Romero-Almaraz M., Ishizuka M.,
RA   Yoshida H., Sanada T., Seto T., Yoshii K., Takashima I.;
RT   ;
RL   Submitted (17-MAR-2011) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Hiroaki Kariwa Hokkaido University, Graduate School of Veterinary
RL   Medicine; Kita-18, Nishi-9, Kita-Ku, Sapporo, Hokkaido 060-0818, Japan
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RN   [2]
RA   Kariwa H., Saasa N., Sanchez-Hernandez C., Romero-Almaraz M., Yoshida H.,
RA   Almazan-Catalan A., Miyashita D., Ishizuka M., Seto T., Sanada T.,
RA   Ramos C., Yoshimatsu K., Arikawa J., Yoshii K., Takashima I.;
RT   "Genetic identification and characterization of distinct hantaviruses
RT   circulating in Mexico";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1980
FT                   /organism="Carrizal virus"
FT                   /segment="S"
FT                   /host="Reithrodontomys sumichrasti"
FT                   /isolate="26/2006"
FT                   /mol_type="viral cRNA"
FT                   /country="Mexico:Guerrero"
FT                   /lat_lon="17.36 N 99.49 W"
FT                   /isolation_source="Lung of Reithrodontomys sumichrasti"
FT                   /collection_date="12-May-2006"
FT                   /db_xref="taxon:1000586"
FT   CDS             28. .1314
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="nucleocapsid protein"
FT                   /protein_id="BAK08522.1"
FT                   /translation="MSNLKELQDNITTHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQ
FT                   SRRAAVSALETKLGELKRQLADFVTSQKLASKPVDPTGLEPDDHLKEKSSLRYGNILDV
FT                   NSIDLEEPSGQTADWRSIGLYILSFTLPIILKALYMLSTRGRQTVKENKGTRIRFKDDT
FT                   SFEEVNGIRKPKHLYVSLPTAQSTMRADEITPGRFRTITCGLFPAQVKARNIISPVMGV
FT                   IGFSFFVKDWSEKIDGFLNSDCPFLPKVQSTSERLLQTIRAYFITRQDQVMQSMLPDIT
FT                   DLMADAQAQGATLFNDITSPHSVWVFACAPDRCPPTALYVAGLPELGAFFSILQDMRNT
FT                   IMASKAVGTAEEKMKKKSAFYQSYLRRTQSMGIQLDQRIIIMYMSHWGKEIVNHFHLGD
FT                   DMDPELRQLAQALVDAKVKEISNQEPLKL"
XX
SQ   Sequence 1980 BP; 599 A; 362 C; 400 G; 619 T; 0 other;

ab620103 Length: 1980  25-MAR-2011  Type: N  Check: 6431  ..

       1  ttgtgaaaag ctactacaaa agctggaatg agcaacctca aagaactcca
      51  agacaatatc acaacacacg aacaacagct agtgactgct cggcaaaagc
     101  ttaaggatgc agagaaggca gttgaggtgg accccgatga cgttaacaaa
     151  agcacattac agagcagacg ggcggctgtg tctgcattgg aaactaaact
     201  cggggaactc aagagacagc tggcagattt tgttacctct cagaaactgg
     251  cttctaaacc tgtggatcca acagggcttg aacctgatga ccatttaaag
     301  gaaaaatcat cactacgtta tggtaacatt ctggatgtca attctattga
     351  cttggaagaa ccaagtggtc agactgcaga ttggagatcc attgggctgt
     401  acatattgag ttttacattg ccaattatac ttaaagcatt atacatgcta
     451  tcaacaagag ggagacaaac agttaaggaa aacaagggga cacgaataag
     501  gtttaaggat gatacctcct ttgaagaagt caatggtata cgcaaaccca
     551  aacacctgta tgtctcacta ccaacagctc aatctactat gagggcggat
     601  gaaataacac caggaagatt tagaaccata acttgtggat tattccctgc
     651  acaagtcaag gcccggaaca tcattagtcc agttatgggt gtcattggtt
     701  ttagtttttt tgtaaaagat tggagtgaga agattgatgg cttcttgaat
     751  tctgattgcc cttttttacc aaaagttcag agcacaagtg agaggctcct
     801  tcagaccatt cgtgcctatt ttattacaag gcaagatcag gtgatgcagt
     851  ctatgttacc agatataact gacctcatgg ctgatgccca agcacagggt
     901  gctactctct ttaatgacat cacatcccca cattctgtgt gggtgtttgc
     951  atgtgctcct gatcgctgcc caccaactgc attatatgtt gctggccttc
    1001  ctgagcttgg tgctttcttt tccatcctac aagatatgag aaataccatc
    1051  atggcctcaa aggctgttgg cactgcagaa gagaaaatga aaaaaaagtc
    1101  tgctttctat caatcttact taaggagaac acagtcaatg ggaattcaac
    1151  tggatcaacg gattatcatc atgtacatgt cacactgggg taaagaaatt
    1201  gttaatcatt tccacttagg ggatgatatg gaccctgaac ttaggcagct
    1251  tgctcaagct cttgtggatg ctaaagtgaa ggagatttct aaccaagagc
    1301  ctctaaaact ataagttgta atcagaatga atctggttaa acagggtggt
    1351  ccattaatgt gaatgaatgt tgtcatcttg tatgtgattg tatgtcttgt
    1401  agataattgt gtaatttata ttgtaatctt atactgtgat gtttatgtaa
    1451  ttcgatatat atgttgtata aggtaaagcc atttaagtgt aagtcacata
    1501  tatgtttatt atgttaaatt taggtgtgta atcttagtga atgtattatt
    1551  agtgttttgg tattaaacta ctgttatttg tgggtggatg cacagggttt
    1601  atttgcacta cgggtggttt gctaaccagg gtataatgtt atctgtaatt
    1651  atatgttagt tacgtatatt gtggttaagt gttacttatt aagttaagtg
    1701  ttacttgtta agttttatca tgtatattta ctcaggtggg atataatcag
    1751  ggttatatat gggtggtatt agtttataag taatcagtta ttataagctg
    1801  ctcatcttaa attgcactaa ctactaatgt cattcttcat ctctttcttc
    1851  cccctttctc ttcactaacc attaacaaaa cttactacct catcctcctc
    1901  ccttttccct aaaaaactac ctcaataaat ctacctcaat gattcatatt
    1951  tcttgattgc ttctcaagga gtctactaca