Sequence of DPV Carrizal virus
Carrizal virus gene for RNA-dependent RNA polymerase, complete cds, isolate: 26/2006.
ACC No: AB620105
Dated: 2011-03-25 | Length: 6517 | CRC: 1452362834
ID AB620105; SV 1; linear; viral cRNA; STD; VRL; 6517 BP.
XX
AC AB620105;
XX
DT 25-MAR-2011 (Rel. 108, Created)
DT 25-MAR-2011 (Rel. 108, Last updated, Version 1)
XX
DE Carrizal virus gene for RNA-dependent RNA polymerase, complete cds,
DE isolate: 26/2006.
XX
KW .
XX
OS Carrizal virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-6517
RA Kariwa H., Saasa N., Sanchez-Hernandez C., Romero-Almaraz M., Ishizuka M.,
RA Yoshida H., Sanada T., Seto T., Yoshii K., Takashima I.;
RT ;
RL Submitted (17-MAR-2011) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Kariwa Hokkaido University, Graduate School of Veterinary
RL Medicine; Kita-18, Nishi-9, Kita-Ku, Sapporo, Hokkaido 060-0818, Japan
XX
RN [2]
RA Kariwa H., Saasa N., Sanchez-Hernandez C., Romero-Almaraz M., Yoshida H.,
RA Almazan-Catalan A., Miyashita D., Ishizuka M., Seto T., Sanada T.,
RA Ramos C., Yoshimatsu K., Arikawa J., Yoshii K., Takashima I.;
RT "Genetic identification and characterization of distinct hantaviruses
RT circulating in Mexico";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6517
FT /organism="Carrizal virus"
FT /segment="L"
FT /host="Reithrodontomys sumichrasti"
FT /isolate="26/2006"
FT /mol_type="viral cRNA"
FT /country="Mexico:Guerrero"
FT /lat_lon="17.36 N 99.49 W"
FT /isolation_source="Lung of Reithrodontomys sumichrasti"
FT /collection_date="12-May-2006"
FT /db_xref="taxon:1000586"
FT CDS 14. .6475
FT /codon_start=1
FT /transl_table=1
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="BAK08524.1"
FT /translation="MEKYKEIHQKVKEITPGAASALECMDLLDRLYAARHDVVDQMIKH
FT DWSDNKDIERPIGQVLLMAGIPNDVIQAMEKKIIPTSPSGQILKSFFRMTPDNYKITGT
FT TIEFIEVTVTADVARGIREKRLKYEGGLTFIEELLEHEHKRGILPQPYKITLGVVAVKT
FT DGSNISTQWPSRRNDGVVQHMRLIQADINYVREHIIKPDERSSLEAMFNLKFHVGGPKL
FT RYFNIPDYRPQSLCHPESQSLLDYCRTWLTEEHSFNFKEVNGASVMECFEENEKLHMSS
FT YTVSRKPRNFLLVQGTVQGPYLPSTITSDQCDTRIGCLEILKNAPQTPVQAIALDMAYK
FT YMSLTKDEIINYYNPKVHFQTTQNVKEPGTFKLGLSQLNPLSRAVIDQVGKHKSEKGLF
FT GNIIESINIGSQIQLNECCRTIEQILSNLEINLGETTNMIPSPRKTTGVDSLLGKFYEN
FT ELTKYLLVILRKTAAWHLGHMLRDITESLIAHAGIKRSKYWSIHAYDHGGVVLFILPSK
FT SLEVVGSYIRFFTVFKDGIGLIDPDNLDSKVDIDDVTWCFSKVMSLDLNRLLALNIAFE
FT KALLATATWFQYYTEDQGHFPLQHALRSVFSFHFLLCVSQKMKLCAIFDNLRYLIPSVT
FT SLYSGFSLLIEKFFERPFKSAFDVYLYSIIRALLISLAQSNKVRFYSKVRLLGLTVDQS
FT TVGASGVYPSLMSRVVYKHYKSLISEATTCFFLFEKGLHGNLNEEAKIHLETVEWARKF
FT QEKEELYGDILMREGYNIDAIKNGSVKVEQQIFCQEVVELAAQELNKYLQAKSQILCSN
FT IMNKHWDKPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIEMYE
FT QTKQHKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAIAKVVPEEYISYGGD
FT RKILNIQLALEKALRWASGHSEIKTSTGNIIRFKRKLMYVSADATKWSPGDNSAKFKRF
FT TQALHDGLSDQKLKCCVVDALRHIYETEFFMSRKLHRYIDNMESYSEAVKDFLDFFNGG
FT VSANIKGNWLQGNLNKCSSLFGAALSLLFKQVWGELFPELECFFEFAHHSDDALFIYGY
FT LEPEDDGTEWFLYVSQQIQAGQYHWYAVNQDMWKSMFNLHEHILLMGSIKISPKKTTVS
FT PTNAEFLSTFFEGCAVSIPFIKILLGSLSDLPGLGFFDDLAAAQSRCVKALDLGASPQL
FT AQLAIVICTSKVERLYGTAEGMVNNPTAFLKVNKQSIPIPLGGDGSMSIMELATAGIGM
FT ADKNILKNAYYSYKHTRRESDRYILGLFKFLMSLSEDIFQHDRLGEFSFVGKVQWKVFT
FT PKSEFEFYDQFSHTYLKAWTQQHPVYDYIIPRNRDNLLVYLVRKLNDPSIVTAMTMQSP
FT LQLRFRMQAKQHMRVCRLEGEWVTFREVLAAADSYATQYNPTENDMDLFQTLVNCTFSK
FT EYAWKDFLNEVKCEVITAKHIHRAKVARTFTVREKDQAIQNPITAVIGYKYATTVDEIS
FT DVLDSSIFPDSLSADLQVMKDGVYRELGLDIGLPEVLKRIAPLLYKAGRSRVVIVEGNV
FT EGTAESICSYWLRSLSLVKTIKVKPRKEVLKAVSLFNRKENIGLQDDLAATRLCIEVWR
FT WCKANEQDVRDWLNALYFENQTLMDWVERFRRKGVVSVDPEIQCIGLLLYDVLGYKSVL
FT QMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEIFWDKKEYILET
FT SITQRHVLKLMMEEVTKELLRCGMRFKTEQVNCARSLVLFKTEAGFEWGKPNIPCIVFK
FT HCVLRTGLRTKQPINKEFIISVQAEGFRAIAQMDIESPRFLLAHAYHTLRDVRYQALQA
FT VGNVWFKTSQHKLFLNPIISSGLIENFMKGIPAAIPPAAYSLIMNKAKISVDLFMFNEL
FT LALINNQNILNLDGIEETSEGYSTVTSMSSRQWSEEMSIVADDDIDDPDEYTIDLDDVD
FT FEQVNLDDDIEHFLQDESAYVGDLLIQTEDTEVKKIRGVTKILEPVKLIKSWVSKGLAI
FT DKVYNPIGIILMARHMSKMYNFHKIPLALLNPYDLTEFESVVKGWGETVNDRFKEYDIE
FT AQRLVSEKHILPEDILPDSLFSYRHVDVLLKRLFPMDPISTFY"
XX
SQ Sequence 6517 BP; 2202 A; 957 C; 1351 G; 2007 T; 0 other;
ab620105 Length: 6517 25-MAR-2011 Type: N Check: 2202 ..
1 gagatctacg acaatggaaa aatataagga aatacatcaa aaagtaaagg
51 agattactcc aggggcagca tcagcattgg agtgcatgga tttacttgat
101 agattgtatg ctgcaaggca tgatgtggtg gatcagatga taaaacatga
151 ttggtctgat aataaagata ttgaaagacc tataggtcaa gtcctgttaa
201 tggcaggtat cccaaatgat gtgatacaag ccatggagaa aaagataata
251 cccacgagtc caagtgggca gatcttaaaa agttttttta gaatgacacc
301 tgataactat aagataactg ggacaacaat tgaattcatt gaggtaaccg
351 ttactgcaga tgttgcaaga ggaattcgag aaaaaaggtt aaaatatgaa
401 gggggtttaa catttattga agaactacta gaacatgaac ataaaagagg
451 tattctacct caaccctata aaatcacctt gggtgtagtg gcagtgaaaa
501 cagacggctc aaatatatcc acccaatggc caagtcgaag gaatgatggt
551 gttgtgcaac atatgagact tatccaggct gatattaatt atgtgcgtga
601 acatataatt aaaccagatg aaagatcatc cttagaagct atgttcaact
651 taaagttcca tgttggaggg ccaaagctta gatactttaa tatacctgat
701 tatagacctc aatcattatg tcacccagaa tcacaatcct tattagatta
751 ttgtagaact tggctaacag aggagcatag ttttaacttt aaagaggtca
801 atggggcaag tgtgatggaa tgctttgaag aaaatgaaaa attacatatg
851 tcatcatata ctgtatctcg caaaccccgg aattttttat tagttcaagg
901 tactgtacag ggtccatatc taccatcaac gattacatct gaccagtgtg
951 ataccaggat aggttgtcta gagatattaa agaatgcacc tcaaactcct
1001 gtccaagcaa tagcccttga tatggcttat aagtatatga gcttgacaaa
1051 agatgaaatc attaattatt ataatcctaa agtgcatttt caaacaacac
1101 aaaatgtgaa ggagcctgga acatttaagt taggtctatc acaattgaat
1151 ccgctgtcac gggcagtaat agatcaggta ggtaagcata agtctgaaaa
1201 gggcttattt ggaaatatta tagaaagtat taatattggt agtcagatac
1251 aattaaatga atgctgtaga acaatagagc agatactgtc aaacctagag
1301 ataaatttag gtgaaacaac caatatgatc ccatcaccca ggaaaacaac
1351 tggagtagat tctctccttg gtaagtttta tgaaaatgaa ttaacgaagt
1401 atcttctggt tattctaaga aaaactgcag cttggcattt aggccatatg
1451 ctcagggata taacagaaag tttaatagct catgcaggta ttaagagatc
1501 aaaatattgg tcaatacatg catatgatca tggaggagta gttctgttta
1551 ttctaccttc aaagtcgctg gaagtggtcg ggtcttatat aagatttttc
1601 acagtattta aagatggtat aggattaata gaccctgaca atctagactc
1651 aaaagtagat atagatgatg ttacgtggtg tttttcaaaa gtcatgagct
1701 tagatttaaa tagattactt gcattaaata ttgcttttga aaaggcatta
1751 ctggctactg caacatggtt ccaatattac acagaagatc aggggcactt
1801 tccattgcaa catgcattga gatcagtgtt ctctttccat tttttattat
1851 gcgtatctca aaaaatgaaa ctctgtgcca tttttgataa tttacgctat
1901 ttaatacctt cagtgacatc cttatattca ggtttttctc tattgattga
1951 gaaattcttt gaaagaccat ttaaaagtgc atttgatgtt tacttatata
2001 gtataattag agcattatta attagtttag ctcaaagcaa caaagtgaga
2051 ttttattcta aggtacgatt attggggtta acagttgatc aatccactgt
2101 aggtgcaagt ggtgtatacc cttctttaat gtctcgagta gtttataagc
2151 attataaaag tctgatatct gaggctacaa cttgtttttt tctatttgag
2201 aaggggctac atggtaatct taatgaagaa gctaaaatac atcttgagac
2251 agttgagtgg gcaagaaaat ttcaggaaaa ggaagagcta tatggagata
2301 ttcttatgag agaaggttat aatattgatg caattaagaa tggtagtgta
2351 aaggtcgaac aacaaatctt ctgtcaagag gtagttgagc tagccgcaca
2401 ggaattgaat aaatatttac aagcaaaatc tcaaatatta tgttcaaata
2451 ttatgaataa acactgggat aagccttatt ttagtcaaac tagaaatata
2501 agtttgaagg ggatgtcagg tgcacttcaa gaagatggtc atttagctgc
2551 cagtgttacc ctaattgagg caattaggtt tttaaataga tcacaaacaa
2601 accctaatgt tattgagatg tatgaacaaa ctaaacaaca taaagctcaa
2651 gcaagaattg taagaaaata tcaaaggact gaagcagatc gtggtttctt
2701 tattacaacc cttccaacac gtgttaggtt agaaattatt gaagattatt
2751 ttgacgcaat tgcaaaagtt gtaccggaag agtatatttc ttatggtggg
2801 gatcgtaaga ttttaaatat tcagttggca ttagagaagg ctttgagatg
2851 ggcttctggt cattcagaaa taaaaacaag cacagggaac ataatacgat
2901 ttaaaagaaa gctcatgtat gttagtgctg atgcaactaa atggtcccct
2951 ggtgataatt cagcaaagtt taagcgtttt acacaagctt tacatgatgg
3001 attgtcagat caaaagttaa aatgttgtgt tgtagatgca ttacgacata
3051 tttatgaaac tgaatttttt atgtcccgta aactacatag atatatagat
3101 aatatggaga gttattctga agctgtgaaa gatttcttag atttttttaa
3151 cgggggagta tcagctaaca ttaaaggcaa ctggcttcaa ggtaacttaa
3201 acaaatgttc ttcattgttt ggagcagcct tgtcattact atttaaacaa
3251 gtatggggtg agttatttcc tgaacttgag tgtttcttcg aatttgctca
3301 ccattctgat gatgctttat tcatatatgg ttatctagaa cctgaggatg
3351 atggaacaga atggtttttg tatgtgtctc agcaaataca agctggacaa
3401 tatcattggt atgctgtaaa ccaggatatg tggaaaagta tgtttaacct
3451 tcatgagcac atattgttga tgggttcaat aaagatttca ccaaaaaaga
3501 caacagtgtc acctacaaat gcagagtttt tgtcaacatt ctttgaaggt
3551 tgtgctgtat ccattccatt tattaaaata ttattaggtt ctttgtcaga
3601 cttacctggc ttaggttttt ttgatgattt agcagcagca caaagccgat
3651 gtgtaaaggc tttagattta ggggcaagcc cgcaacttgc tcaacttgca
3701 attgtaattt gtactagtaa ggttgagcga ttgtatggta ctgctgaagg
3751 tatggttaat aaccccactg cctttcttaa agtgaataag caatcaatac
3801 cgataccgtt aggtggtgat ggttctatgt ctataatgga gttggccact
3851 gctggcattg ggatggctga taaaaatatt ctcaaaaatg catattattc
3901 ctataaacac acacgaaggg aatctgacag atatatttta ggtttattta
3951 agtttttaat gtcattgagt gaagatattt ttcaacatga taggttagga
4001 gagtttagct ttgttggaaa ggttcaatgg aaggtattta cacccaaatc
4051 tgagtttgag ttttatgatc agttctctca cacatatcta aaggcctgga
4101 cacagcaaca tccggtttat gattatataa tacctaggaa tcgtgacaac
4151 ttacttgtat atcttgttcg gaagttgaat gaccctagca tagtaacagc
4201 aatgactatg caatctccac ttcaattaag atttagaatg caggcaaagc
4251 agcatatgag agtttgtaga ttggaaggtg agtgggtcac atttagagaa
4301 gtattagccg cagcagatag ttatgcaaca caatacaacc ctacagagaa
4351 tgatatggat ttgttccaaa cattagtaaa ttgtacattc tcaaaagaat
4401 atgcatggaa agacttcttg aatgaggtta agtgcgaagt aattactgct
4451 aaacatatac accgtgctaa agtcgcaagg acatttactg taagggagaa
4501 agatcaagct atacaaaacc ctatcacagc agtgattggg tataaatatg
4551 ccacaactgt cgatgaaata agtgatgttt tggacagttc aatatttcct
4601 gactcccttt cagctgattt acaagtaatg aaagatgggg tatacagaga
4651 actaggttta gacataggtt tacctgaggt tttaaaacgt atagcaccat
4701 tattgtacaa agctgggcgt tcaagagttg ttatagttga aggtaacgtg
4751 gagggaactg cagaatcaat ttgtagttac tggcttcgaa gtttatcact
4801 tgtaaagaca attaaggtaa aaccacgtaa agaagtatta aaagctgtat
4851 cattatttaa tcgtaaagag aatattggat tgcaggacga tttagctgca
4901 acaagattgt gtattgaggt atggaggtgg tgcaaagcaa atgagcagga
4951 tgtaagagat tggcttaatg cactctattt tgaaaaccaa accttgatgg
5001 attgggttga gaggtttcgg agaaaaggtg tagtctctgt agatccagag
5051 attcaatgca ttggattatt actgtatgat gttctgggat ataagagtgt
5101 gcttcaaatg caagccaacc gacgagctta ttctgggaaa caatatgatg
5151 cctattgtgt tcaaacatat aatgaggaga caaaattgta tgaaggtgat
5201 ttgcgagtta cattcaattt tggattagac tgtgctcgct tagaaatatt
5251 ctgggataag aaagaatata tacttgagac atcaatcact caaaggcacg
5301 tattgaagtt aatgatggag gaggtgacca aggaattgct aagatgtgga
5351 atgcgattta aaacagaaca agttaattgt gcaagaagtc ttgttttgtt
5401 taagactgaa gctgggtttg agtggggtaa accaaacatt ccatgtatag
5451 tgtttaagca ttgtgtattg agaacagggt taagaacaaa acaacccatt
5501 aataaagaat ttatcattag tgttcaggct gaaggtttca gagctatagc
5551 acagatggat atagaaagtc cacgattttt actagctcat gcatatcata
5601 cattacgtga tgtcagatat caagcattgc aggcagttgg caatgtttgg
5651 tttaagactt ctcaacataa attgtttctt aaccctatca tatcctccgg
5701 actcattgag aatttcatga aagggatacc tgcagcaatc ccaccagctg
5751 cgtattcatt aataatgaat aaagctaaaa tttctgtaga tttgttcatg
5801 ttcaatgagc tattagcact gattaataat caaaacattc taaatctaga
5851 tgggattgag gagacatcag aaggttatag tactgttact tcaatgtcta
5901 gtaggcaatg gtcagaggaa atgagcattg ttgcagatga tgatattgat
5951 gacccagatg agtacacaat agaccttgat gatgtggact ttgagcaagt
6001 taatctagat gatgatattg agcactttct tcaagatgag tcagcatatg
6051 ttggggatct cttaatacag actgaagaca cagaagtaaa gaagattaga
6101 ggtgtgacta agatactgga accagtgaaa ttaattaaaa gttgggtatc
6151 taaaggatta gccattgata aagtgtataa ccctatagga attatactta
6201 tggcacggca tatgtctaag atgtataatt tccataaaat tcctttggca
6251 cttttgaacc cttatgactt aacagaattt gaaagtgtgg taaaagggtg
6301 gggagaaact gttaatgata ggtttaaaga atatgatatc gaagcacaaa
6351 gacttgttag tgaaaagcat attcttcctg aagatatatt accagattca
6401 ttattttcct ataggcatgt tgatgtgctc cttaaacgtc tttttccgat
6451 ggatccaata tctactttct attgattgtt tttttacttc atttaatacc
6501 acatgttttt tctaatg