Sequence of DPV Huitzilac virus

Huitzilac virus gene for nucleocapsid protein, complete cds, isolate: 200/2006.

ACC No: AB620106

Dated: 2011-03-25 | Length: 1869 | CRC: 1428450546

                
ID   AB620106; SV 1; linear; viral cRNA; STD; VRL; 1869 BP.
XX
AC   AB620106;
XX
DT   25-MAR-2011 (Rel. 108, Created)
DT   25-MAR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Huitzilac virus gene for nucleocapsid protein, complete cds, isolate:
DE   200/2006.
XX
KW   .
XX
OS   Huitzilac virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC   unclassified Hantavirus.
XX
RN   [1]
RP   1-1869
RA   Kariwa H., Saasa N., Sanchez-Hernandez C., Romero-Almaraz M., Ishizuka M.,
RA   Yoshida H., Sanada T., Seto T., Yoshii K., Takashima I.;
RT   ;
RL   Submitted (17-MAR-2011) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Hiroaki Kariwa Hokkaido University, Graduate School of Veterinary
RL   Medicine; Kita-18, Nishi-9, Kita-Ku, Sapporo, Hokkaido 060-0818, Japan
XX
RN   [2]
RA   Kariwa H., Saasa N., Sanchez-Hernandez C., Romero-Almaraz M., Yoshida H.,
RA   Almazan-Catalan A., Miyashita D., Ishizuka M., Seto T., Sanada T.,
RA   Ramos C., Yoshimatsu K., Arikawa J., Yoshii K., Takashima I.;
RT   "Genetic identification and characterization of distinct hantaviruses
RT   circulating in Mexico";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1869
FT                   /organism="Huitzilac virus"
FT                   /segment="S"
FT                   /host="Reithrodontomys megalotis"
FT                   /isolate="200/2006"
FT                   /mol_type="viral cRNA"
FT                   /country="Mexico:Morelos"
FT                   /lat_lon="19.03 N 99.14 W"
FT                   /isolation_source="Lung of Reithrodontomys megalotis"
FT                   /collection_date="19-May-2006"
FT                   /db_xref="taxon:1000587"
FT   CDS             26. .1312
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="nucleocapsid protein"
FT                   /protein_id="BAK08525.1"
FT                   /translation="MSNLKELQDNITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQ
FT                   SRRAAVSALETKLGELKRQLADFVTSQKLASKPVDPTGLEPDDHLKEKSSLRYGNVLDV
FT                   NSIDLEEPSGQTADWRSIGLYILSFTLPIVLKALYMLSTRGRQTVKENKGTRIRFKDDT
FT                   SYEEVNGIRKPKHLYISLPTAQSTMKADEITPGRFRTITCGLFPAQVKARNIISPVMGV
FT                   IGFNFFVKDWTEKIDGFLNSDCPFLPKVQGAGEKLLQTIRAYFITRQDQVMQSMLPDIT
FT                   DLMADAQAQGATLFSDITSPHSVWVFACAPDRCPPTALYVAGLPELGAFFSILQDMRNT
FT                   IMASKAVGTAEEKMKKKSAFYQSYLRRTQSMGIQLDQRIIIMYMSHWGKEIVNHFHLGD
FT                   DMDPELRQLAQALVDTKVKEISNQEPLKL"
XX
SQ   Sequence 1869 BP; 539 A; 360 C; 417 G; 553 T; 0 other;

ab620106 Length: 1869  25-MAR-2011  Type: N  Check: 8336  ..

       1  gtgaaaagct actacaaaag ctggaatgag caacctcaaa gaattgcaag
      51  acaatatcac agcacacgaa caacagctcg tgactgcccg gcaaaagctt
     101  aaggatgccg aaaaagcagt tgaggtggac cccgatgatg ttaacaagag
     151  cacactacag agcagacggg cagctgtgtc tgcattggag accaaactcg
     201  gagaactcaa gagacagttg gcagattttg ttacctctca gaaactggct
     251  tctaaacctg tggatccaac agggcttgag cctgatgacc atctaaagga
     301  gaaatcatca cttcggtatg gcaatgttct tgatgtcaat tctattgact
     351  tggaagagcc gagtggtcag actgcagact ggaggtctat cgggctttat
     401  atcttgagtt tcacgttgcc tattgttctc aaagccttgt acatgctatc
     451  cacacgagga agacagactg tcaaagaaaa caagggaaca agaattcgct
     501  ttaaggatga cacatcatat gaagaagtga atgggatccg caaaccaaag
     551  catttgtaca tctcattgcc aactgctcag tctaccatga aagcagatga
     601  gataacacct ggtcggttta ggacaataac ctgtggtttg ttccctgcac
     651  aggtcaaagc aaggaacatt attagtcctg tcatgggtgt gatcggtttt
     701  aatttctttg tcaaggattg gactgagaag attgacggtt ttttaaactc
     751  agactgccca ttcttgccaa aagttcaggg tgctggtgaa aagttactcc
     801  agactatccg tgcctatttc attacgagac aagaccaagt aatgcaatca
     851  atgttaccag acataacaga cctcatggct gatgctcaag ctcagggtgc
     901  aacactcttt agtgacataa cctccccaca ctctgtttgg gtgtttgctt
     951  gtgctccaga ccgttgccca ccaacggcat tgtatgttgc tggtctccct
    1001  gagttaggtg ctttcttttc catcttgcaa gacatgcgaa acaccataat
    1051  ggcctctaaa gctgtgggga ctgctgaaga gaagatgaag aaaaaatcag
    1101  ccttctatca gtcatatttg agacgcaccc aatcaatggg aatacaactg
    1151  gaccagagaa tcatcatcat gtacatgtca cactggggaa aagagattgt
    1201  caatcacttc cacttgggag atgacatgga tccagaacta cgacagctag
    1251  cacaggcact tgtggacact aaagtgaaag aaatttccaa ccaagagcct
    1301  ctgaagctgt gaagtcatac cagtctacta atgtgatcat accatcccga
    1351  tctataatgt gatcatgtca ttctgatcca ttaatgtgaa tgagtgttgt
    1401  catcttgtac cttgggttgt tgatgttctg tttgtatcct agtaatattt
    1451  gtttagtaat attttgtatg atagtgtaat tagactttat atccattgta
    1501  acagtaagta tgttaaggat attagtgtat gttaagttta gtaatatatg
    1551  ttaagtgtag tgttgttata gtcatactga ttatgggtgg gcacacggga
    1601  caatttgcac tacgggtggg aatggtaatc agggttcatg ttatcagtat
    1651  tgtcttaggt ttgtattagt ctaggtttat gttattgaat gtaatcttta
    1701  tgttaagttt aaatgtatat catgtgttac tcagggtggg agtataatca
    1751  gggttttgtt tgggtgggtg ttaggtttac agttattcag ttattataag
    1801  ctgctcattc ttagtagttg cactaatttc attattattt cctcctcctt
    1851  ctctgcatcc ccttactaa