Sequence of DPV Huitzilac virus
Huitzilac virus gene for RNA-dependent RNA polymerase, complete cds, isolate: 200/2006.
ACC No: AB620108
Dated: 2011-03-25 | Length: 6540 | CRC: 1686917976
ID AB620108; SV 1; linear; viral cRNA; STD; VRL; 6540 BP.
XX
AC AB620108;
XX
DT 25-MAR-2011 (Rel. 108, Created)
DT 25-MAR-2011 (Rel. 108, Last updated, Version 1)
XX
DE Huitzilac virus gene for RNA-dependent RNA polymerase, complete cds,
DE isolate: 200/2006.
XX
KW .
XX
OS Huitzilac virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-6540
RA Kariwa H., Saasa N., Sanchez-Hernandez C., Romero-Almaraz M., Ishizuka M.,
RA Yoshida H., Sanada T., Seto T., Yoshii K., Takashima I.;
RT ;
RL Submitted (17-MAR-2011) to the EMBL/GenBank/DDBJ databases.
RL Contact:Hiroaki Kariwa Hokkaido University, Graduate School of Veterinary
RL Medicine; Kita-18, Nishi-9, Kita-Ku, Sapporo, Hokkaido 060-0818, Japan
XX
RN [2]
RA Kariwa H., Saasa N., Sanchez-Hernandez C., Romero-Almaraz M., Yoshida H.,
RA Almazan-Catalan A., Miyashita D., Ishizuka M., Seto T., Sanada T.,
RA Ramos C., Yoshimatsu K., Arikawa J., Yoshii K., Takashima I.;
RT "Genetic identification and characterization of distinct hantaviruses
RT circulating in Mexico";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6540
FT /organism="Huitzilac virus"
FT /segment="L"
FT /host="Reithrodontomys megalotis"
FT /isolate="200/2006"
FT /mol_type="viral cRNA"
FT /country="Mexico:Morelos"
FT /lat_lon="19.03 N 99.14 W"
FT /isolation_source="Lung of Reithrodontomys megalotis"
FT /collection_date="19-May-2006"
FT /db_xref="taxon:1000587"
FT CDS 36. .6497
FT /codon_start=1
FT /transl_table=1
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="BAK08527.1"
FT /translation="MEKYREIHQRIKEIPPGTASALECMDLLDRLYAVRHDVVDQMIKH
FT DWSDNKDVERPIGQVLLMAGVPNDVIQGMEKKIIPSSQSGQILKSFFRMTPDNYKITGN
FT TIEFIEVTVTADVAKGIREKRLKYEGGLAFIEELLSQEHKRGNIPQPYKITLGVVAVKT
FT DGSNISTQWPSRRNEGVVQHMRLIQADINYVREHMIKPDERSSLEAMFNLKFHVSGPKL
FT RYFNIPDYRPQSLCHPEPQSLINYCKHWLTEDHNFNFKEVSGTNVMECFEENERLHMSS
FT YTESRKPRNFLLIQGTVQGPYLPSTITSDQCDTRIGCLEILKSVPQTPVQAIALDMAYK
FT YMSLTKDEIINYYNPRVHFQTTQNVKEPGTFKMGLSQLNPLSRAVLDQVGKHKSEKGMF
FT GGLIESINIGSQIQLNECCRVIEQILSNLEINLGETTSTIPQPRKTTGVDSLLGKFYEN
FT ELIKYLLVILRKTAAWHIGHMLRDITESLIAHAGIKRSKYWSIHAYDHGGLILFILPSK
FT SLEVVGSYIRFFTVFKDGIGLIDSDNLDSKVDIDDVTWCFSKVMSIDLNRLLALNIAFE
FT KALLATATWFQYYTEDQGHFPLQHALRSVFAFHFLLCVSQKMKLCAIFDNLRYLIPSVT
FT SLYSGYTLLIEKFFERPFKSAFDVYLYSIIRALLISLAQSNKVRFYSKVRLLGLTVDHS
FT TVGASGVYPSLMSRVVYKHYKSLISEATTCFFLFEKGLHGNLNEEAKIHLETVEWARKF
FT QKKEEQYGDILMREGYNIDAIKNGSVKVEQQIFCQEVVELAAQELNKYLQAKSQVLCSN
FT IMNKHWDRPYFSQTRNISLKGMSGSLQEDGHLAASVTLIEAIRFLNRSQTNPNVIEMYE
FT QTKQHKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAVAKVVPEEYISYGGD
FT RKVLNIQLALEKALRWASGHSEITTSTGNIIRFKRKLMYVSADATKWSPGDNSAKFKRF
FT TQALHDGLSDHKLKCCVVDALRHIYETEFFMSRKLHRYIDNMETHSDAVKDFLEFFNGG
FT VSATIKGNWLQGNLNKCSSLFGAALSLLFKQVWNELFPELECFFEFAHHSDDALFIYGY
FT IEPDDDGTEWFMYVSQQIQAGHYHWYAVNQDMWKSMFNLHEHILLMGSIKISPKKTTVS
FT PTNAEFLSTFFEGCAVSIPFIKILLGSLSDLPGLGFFDDLAAAQSRCVKALDLGASPQL
FT AQLAIVICTSKVERLYGTAEGMVNNPSAFLKVTKQAIPIPLGGDGSMSIMELATAGIGM
FT ADKNILKNAYYSFKHTRRESDKYILGLFKFLMSLSEDIFQHDRLGEFSFVGKVQWKVFT
FT PKSEFEFHDQFSHTYLKAWTQQHPVYDYIIPRSRDNLLVYLVRKLNDPSIVTAMTMQSP
FT LQLRFRMQAKQHMKVCRLEGEWVTFREVLAAADSFATQYSPTENDLDLFQTLVNCTFSK
FT EYAWKDFLNEVKCEVTTARHIHRAKVARTFTVREKDQAIQNPITAVIGYKYATTVDEIS
FT DVLDSSIFPDSLSADLQVMKDGVYRELGLDIGLPDVLKRIAPLLYKAGRSRVVIVEGNV
FT EGTAESICSYWLRSLSLVKTIKVKPRKEVLKAVSLFNRKENIGLQDDLAATRLCIEVWR
FT WCKANDQDVNDWLCALYFENQTLMDWVERFRRKGVISVDPEIQCMALLLYDVLGYKGVL
FT QMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEIFWDKREYILET
FT SITQRHVLKLMMEEVTKELLRCGMRFKTEQVNSARSPVLFKTEAGFEWGKPNVPCIIFK
FT HCALRTGLRTKQPINKEFIINIQAEGFRAIAQMDIESPRFLLAHAYHTLRDVRYQALQA
FT VGNVWFKTPQHKLFINPIISSGLIENFMKGIPAAIPPAAYSLIMNKAKISVDLFMFNEL
FT LALINNHNILNLDGIEETSEGYSTVTSMSSRQWSEEMSLVADDDIDDPDEYTIDLDDVD
FT FEQVNLDEDIEHFLQDESAYVGDLLIQTEDTEIKKIRGVTKILEPVKLIKSWVSKGLAI
FT NKVYNPVGIVLMARHMSKTYNFHKIPLALLNPYDLTEFESVVKGWGETVNDRFQEYDTE
FT AQKLVTEKHILPEDILPDSLFSYRHVDVLLKRLFPIDPISSFY"
XX
SQ Sequence 6540 BP; 2123 A; 1041 C; 1423 G; 1953 T; 0 other;
ab620108 Length: 6540 25-MAR-2011 Type: N Check: 132 ..
1 tagtagtaga ctccgagata gagaagtcta ctacaatgga aaaatacaga
51 gagatacacc agagaattaa ggaaataccc ccagggactg catcagcatt
101 agagtgtatg gacctgctgg acaggttgta tgcagtaagg catgatgtag
151 tggaccagat gataaagcat gattggtctg acaataaaga tgtagaaaga
201 ccgataggtc aggtattgct aatggcaggt gtgccgaatg acgttattca
251 ggggatggaa aagaaaatta ttcctagcag ccagagtgga caaatactga
301 agagtttttt tagaatgacc ccagataatt ataagataac aggcaacact
351 attgagttca tagaggtaac agtaacagca gatgttgcta aagggatcag
401 agagaagagg ctgaagtatg aggggggttt agccttcatt gaggagttat
451 tatctcaaga gcataaaaga ggtaatattc ctcagccata taagatcact
501 ttaggtgtgg ttgcagtcaa aactgacgga tccaatatat caacgcaatg
551 gccaagcagg cgtaatgagg gtgtggtaca acatatgaga ctcatccaag
601 ctgatattaa ttacgtgcgt gagcacatga taaagcctga tgagaggtca
651 tcattggagg caatgtttaa tttgaaattc catgttagtg ggccaaagct
701 ccgatatttt aacataccag actataggcc ccaatcctta tgtcatcctg
751 aacctcaatc cttgattaac tattgtaaac attggttgac agaggatcat
801 aactttaatt ttaaagaggt tagtggaact aatgttatgg aatgctttga
851 agaaaatgaa aggcttcaca tgtcatcgta tacagagtct cgaaagccta
901 ggaacttctt gctgatacag ggtactgttc aagggcctta cttaccttct
951 acaataacgt cagaccagtg tgatactaga ataggctgtt tggaaatttt
1001 aaagagtgtg cctcaaacac ctgtacaagc catagcacta gatatggctt
1051 acaagtatat gagccttaca aaggatgaga ttataaatta ttataatccg
1101 agagtccact ttcagacaac acagaatgtg aaagaaccag ggacttttaa
1151 aatgggtctg tcacaattga acccattatc tagagcagta ttggatcaag
1201 ttggtaagca caaatcagag aaaggtatgt ttggaggttt gattgagagt
1251 ataaatatcg gaagtcaaat acagttaaat gagtgttgta gagtgattga
1301 acaaatatta tctaaccttg aaattaacct aggagagaca acaagtacca
1351 tcccacaacc taggaaaaca acaggagttg attcactttt aggaaagttt
1401 tatgagaatg aattaatcaa gtacttgttg gtaatattaa gaaaaactgc
1451 agcatggcat ataggacata tgcttagaga tataacagag agtctcattg
1501 cacatgcagg gattaagcgt tctaagtatt ggtcaataca tgcctatgat
1551 catggagggt taattttatt tatcctacct tccaagtcac ttgaagttgt
1601 gggttcttat attaggtttt ttacagtatt taaggatggt attggcctta
1651 ttgactctga taacctagat tctaaagtgg atatagatga tgtgacatgg
1701 tgtttttcta aagttatgag tatagatcta aatagattac ttgctttgaa
1751 cattgctttt gagaaggcac tgttagcaac tgctacttgg tttcagtatt
1801 atacagaaga ccagggacac tttccacttc agcatgcatt gagatctgtc
1851 tttgcctttc atttcctgtt gtgtgtatcc caaaagatga agctctgtgc
1901 tatatttgat aacctacgtt atctcattcc atcagtcaca tctctatatt
1951 caggctatac gctgttgatc gaaaagttct ttgagcgccc ctttaagagt
2001 gcatttgatg tctatttgta tagtattatt agggctttat taataagcct
2051 agcacagagt aataaagtta ggttttactc taaagtgagg cttcttggtt
2101 taactgtaga ccattctact gttggtgcca gtggggtgta tccttcttta
2151 atgtcacgtg tagtttacaa gcattataaa agtttaatct cggaggcaac
2201 tacatgtttt ttcttgtttg aaaagggact tcatggtaat ttaaatgaag
2251 aagcaaaaat tcatctagaa actgtagagt gggctaggaa atttcaaaag
2301 aaagaagagc aatatggaga tattttaatg agagagggtt ataacattga
2351 tgcaattaaa aatgggagcg tcaaagtaga acaacagatt ttttgtcagg
2401 aggttgtaga actagctgca caggaactta acaaatattt gcaggcaaag
2451 tcacaggttt tatgttctaa tatcatgaat aaacattggg ataggcctta
2501 ttttagtcaa acaaggaata taagtttgaa gggtatgtca ggttcattac
2551 aagaggatgg ccatcttgca gcaagtgtta cactgataga ggcaattcgt
2601 ttcttaaaca gatcacaaac gaatccaaat gttattgaaa tgtatgagca
2651 gactaagcaa cataaagctc aagcacggat tgtgcggaaa tatcaaagga
2701 ctgaagcaga tcgcgggttt tttattacta ctttacccac tcgtgtgagg
2751 ttagaaatca tagaagacta ttttgatgca gtagcaaaag ttgtcccaga
2801 agaatacata tcatatggtg gtgataggaa agttctaaat attcagctgg
2851 ctctggagaa ggctttacgg tgggcatccg gacattcaga aattaccaca
2901 agtacaggga acatcatacg ttttaaacgg aaattgatgt atgtcagtgc
2951 tgatgcaaca aaatggtctc caggtgacaa ttcagcaaaa tttaaaaggt
3001 tcacacaggc attacacgat ggattgtctg atcacaaact taaatgctgt
3051 gttgtggatg ctctccggca tatttatgaa acagaatttt tcatgtctcg
3101 caagctacac agatatatag acaatatgga gactcattca gatgctgtaa
3151 aggattttct tgagttcttt aatgggggag tttctgctac tattaaaggt
3201 aactggcttc agggaaattt gaacaaatgt tcatcattat ttggggctgc
3251 attatccctt cttttcaagc aggtttggaa tgagttgttt cctgaactag
3301 agtgtttctt tgagtttgct caccattcgg atgatgcatt gttcatatat
3351 gggtatatag aaccagatga tgatggtact gaatggttta tgtatgtttc
3401 gcagcaaatt caggctggtc attatcattg gtatgcagta aaccaagaca
3451 tgtggaaaag tatgtttaac ttacatgagc atatactcct tatgggttca
3501 attaaaatct cacctaaaaa gacaacggtt tcacctacaa atgcagaatt
3551 tttatctaca ttttttgaag ggtgtgcagt atcgattccc tttataaaaa
3601 tattgcttgg atcattatca gacttaccag gtctgggctt ttttgatgat
3651 cttgcagctg cccagagcag atgtgtgaaa gctttagatt taggtgcaag
3701 tccacagctt gcacagctgg caattgtaat ttgcacaagt aaggttgaga
3751 gactgtatgg aacagctgaa ggcatggtta acaaccctag tgccttctta
3801 aaagtcacta aacaagctat tcctattcca ctggggggtg atggctcaat
3851 gtcaattatg gaacttgcta cagctggtat cggcatggct gacaaaaata
3901 tattaaaaaa tgcctattac tcattcaaac atacacgaag agaatcagac
3951 aaatatatat tagggctatt taaatttttg atgtcattga gtgaggatat
4001 ctttcagcat gataggttgg gggagttcag ctttgtgggt aaggtacaat
4051 ggaaagtatt cactcctaag tcagagtttg aattccatga tcaattttca
4101 catacctatc ttaaggcttg gacacagcag cacccagtgt atgactatat
4151 aattccaagg agccgtgata atttgcttgt ataccttgtt agaaagctga
4201 acgacccaag tatagttact gcaatgacca tgcaatctcc tcttcaattg
4251 aggtttcgaa tgcaggctaa acagcatatg aaagtatgca gacttgaagg
4301 ggaatgggta acatttagag aagttcttgc agctgcagat agctttgcaa
4351 cacaatatag cccgactgag aatgacttag atctattcca gacattagta
4401 aactgtacat tttcaaagga atatgcctgg aaagattttt taaatgaagt
4451 aaagtgtgaa gtcactactg ctagacatat tcatcgtgca aaagtagcaa
4501 ggacatttac tgtgagagaa aaagatcaag ccatccaaaa tcctatcact
4551 gcagtgattg gttacaagta tgcaacaact gttgatgaaa taagtgatgt
4601 ccttgatagc tctatattcc ctgactcatt atcagctgac cttcaagtta
4651 tgaaagatgg ggtttatcgt gagttaggac ttgatatagg attacctgat
4701 gttttgaaga ggattgcccc tttattatat aaagcaggta ggtcaagggt
4751 tgttattgtg gaaggtaatg tagaaggtac agcagaatct atttgcagtt
4801 actggcttag gagcctctct ttagttaaga caataaaagt caagcctcgg
4851 aaagaagttt taaaggctgt atcattattc aatagaaaag aaaacatcgg
4901 acttcaggat gacttggctg ctacgaggct atgtattgag gtatggcgtt
4951 ggtgtaaggc caatgatcaa gatgtaaacg attggctttg tgctttatac
5001 tttgaaaatc agacactcat ggattgggtg gaaagattta ggagaaaggg
5051 ggtcatatca gtagaccctg agattcaatg catggcttta ttactttatg
5101 atgttttagg ttataagggt gtattacaaa tgcaagcaaa tcgaagggct
5151 tattcaggga agcagtatga tgcatattgt gtccagacat acaatgagga
5201 aacaaaactg tatgagggtg atctgagagt tacatttaat tttggtctag
5251 actgtgctag attagagata ttttgggata aaagagagta tattttagag
5301 acctctatta ctcaaagaca tgtccttaag cttatgatgg aagaagttac
5351 caaagagttg cttagatgtg gtatgcggtt taagacagaa caagttaata
5401 gtgcacggag tcctgttctt tttaagacag aagctggctt tgaatggggt
5451 aaaccgaatg ttccatgtat tatatttaag cattgtgctt tacggacagg
5501 acttagaaca aaacaaccta ttaacaagga atttattatt aacatacaag
5551 ctgaaggctt tcgtgcaata gcacaaatgg acattgaaag tccaaggttt
5601 ttattagcac atgcatacca cacattgaga gatgttagat atcaagcctt
5651 acaagcagtt ggtaatgtat ggttcaagac accgcaacat aagttgttta
5701 taaatccaat aatctcttca ggcttgattg aaaactttat gaaaggaata
5751 ccggcagcaa ttccccctgc tgcatattca ttaattatga ataaggctaa
5801 aatctcagtt gacctcttta tgtttaatga gctgttagcc ctaattaaca
5851 atcacaatat attaaactta gatggcattg aagaaacatc tgaagggtat
5901 agtacagtca catctatgtc aagtcgtcaa tggtcagaag agatgagcct
5951 tgttgcagat gatgatattg atgatcccga tgagtataca attgatcttg
6001 atgatgtgga ctttgaacaa gtgaatctgg atgaagacat tgagcatttt
6051 ttacaagatg aatcagcata tgtgggtgac ctcttgatcc aaactgagga
6101 cacagaaata aagaaaatca gaggtgtaac caagatatta gaacctgtga
6151 agttgattaa gagttgggtt tcaaaagggt tagccattaa taaagtatac
6201 aaccctgtag gaattgttct gatggcaaga catatgtcaa aaacgtataa
6251 cttccataaa attccgctgg cacttttaaa tccatatgat ctaacagaat
6301 ttgaaagtgt tgtaaagggc tggggggaga cagtgaatga taggtttcag
6351 gagtatgata cagaagcaca gaaattagta actgaaaaac acatactccc
6401 agaggatata ctgccagact ctttgttttc ctaccggcat gtagatgtgc
6451 tcctaaaacg cctctttcct atagacccta tatcctcttt ctattagttg
6501 atttttcact tcatatagta cagaatgttc tttctaatga