Sequence of DPV Blueberry latent spherical virus
Blueberry latent spherical virus genomic RNA, segment: 2, complete sequence.
ACC No: AB649297
Dated: 2012-02-29 | Length: 6344 | CRC: -1105022485
ID AB649297; SV 1; linear; genomic RNA; STD; VRL; 6344 BP.
XX
AC AB649297;
XX
DT 26-OCT-2011 (Rel. 110, Created)
DT 29-FEB-2012 (Rel. 111, Last updated, Version 3)
XX
DE Blueberry latent spherical virus genomic RNA, segment: 2, complete
DE sequence.
XX
KW .
XX
OS Blueberry latent spherical virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup C; unclassified Subgroup C.
XX
RN [1]
RP 1-6344
RA Isogai M., Yoshikawa N.;
RT ;
RL Submitted (28-JUL-2011) to the INSDC.
RL Contact:Masamichi Isogai Iwate University, Faculty of Agriculture; 3-18-8
RL Ueda, Morioka, Iwate 0208550, Japan
XX
RN [2]
RC DOI:10.1007/s00705-011-1177-7
RA Isogai M., Tatuto N., Ujiie C., Watanabe M., Yoshikawa N.;
RT "Identification and characterization of blueberry latent spherical virus, a
RT new member of subgroup C in the genus Nepovirus";
RL Arch. Virol. 157:297-303(2012).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6344
FT /organism="Blueberry latent spherical virus"
FT /segment="2"
FT /mol_type="genomic RNA"
FT /country="Japan:Iwate, Takizawa-mura"
FT /db_xref="taxon:1071488"
FT CDS 56. .4951
FT /codon_start=1
FT /transl_table=1
FT /gene="RNA2"
FT /product="polyprotein"
FT /protein_id="BAL04701.1"
FT /translation="MMTYDPDFAERMISAMKTDPKGFMAFVEKTKAAYAKGGLEATWAV
FT VPPTVTEPLPKVQVPFVSRATVLRGIVERAIQLASTKICSSVLFQRRVGRAIWALAEGV
FT VKYATLLGVRAALAMEEASQWVPICSSGSYSNVVSSNSPFCTSNWGVPPPSSKMAVVVS
FT ATTQIPALQEQVEMIPPMGFVTFKSQGAETPKNDALKALQIPAHQEQVEMIPPMGFVTF
FT KSQGAETPKNDALKALQIPAHQEQVAVAPPTELVVLKPQEVETSKSGTLKVSQIPVLQE
FT QVVMAPPIELVVLKPQEVETSRIDAPKALDVVPPMAFGNSVSIQDETWGPEEAYLPFEI
FT PISKANLCGPCIHVVGLPTTPLSGWSSFCGFENPPLPVTDKECFSLYSACIALAMQVEL
FT SLDNCPAFDFCGWDEPSLSFIPTAPSLEAYASFSYSFTPDFQEYYKNFLFCGPFENPSF
FT YEGPIGPLSFGATIMASHSLDHDCDLSFSSLSATAGILHSSIEVSAKLGSWPKRDFSHS
FT PALLMKGESFCGFKSLPWPITTKDFDLLMGALDALHETPQQGTWPCGGTTSFNPSYTPR
FT FKRGDENYSLPSNWKGKYSASNEALDRIYTRISEWGVRVNPKSGHFIACKGACCIPRCV
FT SYEHGWICGQDVLYAHDCWICAIEALNATGKQDRKERKLFAALLEHTSIVGSAEIVKEP
FT VPEKPSGGFLGCFYATKHEVAPKKNSLSTIATLFAAPALAFIHSEREEAETSAKLQDKA
FT DEEHDKYWSSVESVKSKLKAKKGKKVPNSAEGMLGDKKTKLVERDVFAKVVHGSTMDRL
FT KNRFISDGSMILTDQTFPLKDEEVRLGSTVGCPIYTRLPTFTEKELRKLTDKWEMSNTG
FT VVALDMAIQSHVPEGTPMVAFATIMDGRTDDPHVAAQCGSYFDLGRGRCQALSLPLVNF
FT NLNDLCKRLGNDDPELYLATYFNDLLGYRPGELVFTYGSSELLEHKPDAYTNKSLCKDT
FT WDDILKRNVQKGNRIVKGFNVIDSISQDYEQEIPDFGDVNFNTKPRSIVAPTKAFTAKG
FT VKEHSDPSTLRRSFSLARTQFGRVPTRNPTPFGGLAMGQAKHDPMPSNLDSKSMFEAPR
FT HSTTCSGLESPYEIAISETYNVPKDAREGTHIGTIDFYTSIASQHKMPYQKWLGLGLID
FT AEVMLNIYCGGNPFLGTTIGIVYDFYNKLDIATTLGGKLPRILGNCLPQTLHPMALGGF
FT GSYKVNMSQYLGHSLFVSAKSFADPRFHLYIYDDNTTEASAEWRCTVEILVRRCSEERE
FT NFNIPILTIPCSNFNSFINLDLFKGFGTIPLGKDPAIMPIGLDFAVAKEYATGKTCLGT
FT TQAIFRCFLGVGGTLEGQLIRTSTIMVSCNVRILIWYGLSLPTLQETGSIPHEDLDFSR
FT SDGTFRLKIQSPFARIANRTIDARLLVYPLGGPIATKGCNAPFSFAIYVKGIHFDEAVQ
FT PLLFPDREYHWFQLDSFAKGALTIPLPNHICDFALDKQKVATVHLRSNPLSAIFGSCGF
FT FKGNLTMIFRWTMERKISDGGSAIWIARCYGTTDSHEVLESQISNVYTPGEIRLELNTG
FT DFSGANIPGGTTSPKQFPLIWIADGASVGNIQCSVLLHSGFAFYGRSCLAIK"
FT mat_peptide 3392. .4948
FT /product="coat protein"
FT /note="CP"
XX
SQ Sequence 6344 BP; 1681 A; 1234 C; 1464 G; 1965 T; 0 other;
ab649297 Length: 6344 29-FEB-2012 Type: N Check: 7894 ..
1 ttgaaaatta ttttgaattt tctatttgtg gcctttattt tcttctaata
51 tttccatgat gacatacgat ccagattttg ctgagcggat gatatccgct
101 atgaaaactg atcccaaagg ctttatggcc tttgtggaaa aaactaaggc
151 tgcctatgcc aagggcggtc ttgaggctac atgggctgta gttccaccta
201 cagtgactga acccctgcca aaggttcagg ttccttttgt ctctagggct
251 actgtcctaa gaggcatagt tgagagagcc attcagttgg cctcaactaa
301 gatctgctcc tctgttcttt tccagaggag agttggacgg gccatctggg
351 ccttggctga gggggtagtt aaatatgcta ccctcttggg tgtgcgagcg
401 gcgctcgcaa tggaggaggc atcccagtgg gtgcctatct gtagctctgg
451 gagctacagt aatgtggtga gcagcaactc acccttctgc acatccaact
501 ggggtgtgcc tccgccatct agtaagatgg ctgttgtagt ttctgctaca
551 acacaaattc ctgctctgca agagcaggtg gaaatgatcc ctcctatggg
601 atttgtgact tttaagtcac agggagctga aactcccaag aatgatgccc
651 ttaaggcatt acaaattcct gctcaccaag agcaggtgga aatgatccct
701 cctatgggat ttgtgacttt taagtcacag ggagctgaaa ctcccaagaa
751 tgatgccctt aaggcattgc aaattcctgc tcaccaggag caggtggcag
801 tggctcctcc tacggagctt gtggtgttga aaccacagga ggttgaaacc
851 tccaagagtg gtacccttaa ggtatctcaa attcctgttc ttcaagaaca
901 ggtggtaatg gctcctccta ttgagcttgt ggtactgaaa ccacaggagg
951 ttgaaacctc caggattgat gcccccaagg cattggatgt ggtgcctcct
1001 atggcatttg gaaacagtgt ttccatccag gatgaaacct ggggccctga
1051 agaggcttat cttccttttg agattcctat ctcaaaagcg aatctatgtg
1101 gaccatgtat ccatgtagtg gggttaccaa ccacccctct ctctggttgg
1151 tcttcttttt gtggatttga aaatccacca ctccctgtta ctgacaagga
1201 gtgtttttct ttatattctg cttgtattgc acttgcaatg caagtggagc
1251 tctctctgga caattgtcca gcttttgatt tttgtggttg ggatgaaccc
1301 tctctttctt tcattccaac tgctccttcc cttgaggctt atgcctcttt
1351 ttcttattct tttactcctg attttcagga gtattataaa aattttttat
1401 tttgtgggcc ttttgagaat ccttcttttt atgaaggacc tattggtcct
1451 ctttcttttg gggctactat tatggcctca cattctcttg atcacgattg
1501 tgatctttct ttttcctctt tgtcagcaac tgctggcatt ttgcattcat
1551 ctatagaggt gagtgcaaaa ttgggttcgt ggcccaagag agatttttct
1601 cattccccag ctctgttgat gaaaggggaa tctttttgtg gttttaaatc
1651 acttccttgg cctattacaa ccaaggactt tgatttgttg atgggagcat
1701 tagacgctct ccatgaaacc ccccaacaag gtacttggcc ttgtggggga
1751 accacatctt ttaacccttc ttacaccccg cgttttaaaa ggggtgatga
1801 gaattattct ttgccttcca attggaaggg taaatattct gcctctaatg
1851 aggcattaga tagaatttat actcgcatct cagaatgggg tgttagagtt
1901 aatcccaaat caggtcattt tattgcctgt aagggagcct gttgtatccc
1951 ccgttgtgtt agttatgaac atgggtggat ctgtggccaa gatgtccttt
2001 atgcacatga ttgttggatc tgtgctatag aggcgctcaa tgccacgggg
2051 aaacaggata gaaaggagcg caaacttttt gctgcgcttc ttgaacatac
2101 tagcatagtt ggttccgctg aaattgtaaa ggaaccagta ccagaaaaac
2151 ctagtggcgg atttctgggc tgtttttacg ccaccaaaca tgaagtagct
2201 cctaaaaaaa atagtttaag tactatagct actttatttg ctgcaccagc
2251 tcttgcgttt atacacagtg aacgtgagga agctgagact tctgccaaac
2301 tgcaagataa ggcagatgaa gaacacgaca agtattggtc tagtgttgaa
2351 tcagtgaaga gcaagctcaa agctaagaag ggaaagaaag ttcccaactc
2401 tgctgagggt atgcttggag ataaaaaaac caagcttgtc gaaagagatg
2451 tgttcgccaa ggtggtgcat ggatcaacca tggatcgcct taaaaatagg
2501 tttatatccg atgggtctat gatattgact gatcaaacct ttccattgaa
2551 agatgaggag gttcgattag gcagtactgt aggctgtcct atatacaccc
2601 gtctcccaac atttacagag aaagagttgc gaaaactcac agataaatgg
2651 gagatgtcga acacaggggt tgtagccttg gacatggcta ttcaatctca
2701 cgtcccagaa ggaactccta tggttgcttt tgcaaccatt atggatggaa
2751 gaacagatga tccacatgta gcagcacaat gtggatcata tttcgatctg
2801 gggagaggaa ggtgtcaagc cttgtccttg cctcttgtga atttcaattt
2851 aaatgatctt tgcaagagat tgggtaatga tgatcccgag ttatatctag
2901 caacttattt taatgatttg ctgggatatc gcccggggga gttagtcttt
2951 acctatggct cttcagagct tctggaacat aaaccagatg cttacactaa
3001 taagagtcta tgtaaggata catgggatga cattttaaaa agaaatgtcc
3051 aaaaaggaaa tcgcattgta aagggattca atgtgattga ttctatatcg
3101 caagattatg aacaagaaat cccagatttc ggtgatgtaa attttaacac
3151 aaaaccgaga tctattgtag cgcctactaa agcttttaca gctaaaggcg
3201 taaaagaaca tagtgatcct agcacattgc gaagatcatt ttctttagca
3251 cggacccaat ttggtcgtgt gcccactaga aatcccaccc catttggtgg
3301 gttggcaatg ggtcaggcaa agcatgatcc aatgccatct aacttagata
3351 gtaaatctat gtttgaggct ccgcgccata gcacaacgtg cagtggtttg
3401 gaatcaccct atgaaatagc aatttcggag acatataatg ttcccaaaga
3451 tgctagggag ggtacgcata ttggtactat agatttttat accagtatag
3501 cgtctcaaca taagatgccc taccagaaat ggttgggttt aggactaatt
3551 gacgcagaag ttatgctaaa tatatactgt ggcggcaatc cttttcttgg
3601 aaccaccata ggtatagtgt atgacttcta taataaatta gacatagcaa
3651 ctactttggg gggaaaattg ccgcgtattt taggtaattg tctcccacaa
3701 accctacacc ccatggcgtt aggagggttt ggcagctata aggtgaacat
3751 gtctcaatat ttggggcata gtctctttgt atctgcgaag agttttgcgg
3801 atcctcggtt tcatctgtat atatatgatg ataatacaac tgaggcgtct
3851 gcagaatggc gttgtacagt agaaatattg gtacgccgtt gcagtgagga
3901 gagggagaat tttaacattc caatcctcac tataccctgt agtaatttta
3951 attcttttat taatttagat ttatttaaag gttttggaac tattccacta
4001 gggaaagatc cagccatcat gcctatagga cttgattttg ctgtagcaaa
4051 agaatatgct acgggaaaaa cttgtcttgg caccacccag gcaattttta
4101 gatgttttct gggtgtgggt ggcaccttag aagggcagtt gattagaacc
4151 tctaccataa tggtatcctg taatgtgcgg atacttatat ggtatgggtt
4201 atctttacct acccttcaag agactggaag tataccacat gaagatcttg
4251 attttagtag atctgatggt actttcagat taaaaataca gagtcctttt
4301 gctcgcattg ccaataggac tatagatgca cggcttttgg tttatccctt
4351 agggggacca atagccacta aaggttgcaa tgcacctttc tcatttgcca
4401 tttatgtgaa aggtatacat tttgatgaag ctgtgcaacc attgttgttt
4451 ccagataggg aatatcactg gttccagcta gattcattcg caaagggtgc
4501 tcttactatt cctttgccaa atcatatctg tgattttgca ctggataagc
4551 agaaagttgc tacagttcat ttgagatcta accctctatc tgctatcttt
4601 ggatcatgtg gtttctttaa aggaaatctt accatgatct ttaggtggac
4651 gatggagaga aagatttcag atggtggtag cgccatctgg attgcccgat
4701 gctatggtac aacagatagc catgaggtgt tagagagtca aatctccaac
4751 gtatataccc ctggagaaat acgcctggaa ttgaatactg gcgatttctc
4801 tggggctaat atacctggag gtactacctc tcctaagcaa tttccattga
4851 tttggattgc tgatggggct tctgttggca acatacaatg ttcggtattg
4901 ttgcattcag gatttgcctt ttatggtaga tcttgtctag ccataaagtg
4951 aaatggctga acacgtgctg ttgcgtacaa cagatgtttc attgtccatt
5001 aggcaatggg gtgtggtggt cctaaaccac ttccaagagg gcgtcatcgc
5051 ttagcatttt acctaagggt tgaagatgtg aatattggag taatgcccca
5101 atagtcctct gcttttgcag taccaagaaa ttacttggtc ttggaggtct
5151 cagttccgat tctaactgag tgctttttga tatggttcaa gaaccaatcc
5201 cgactatggt atggttggac tgtattatat atgtagaact tgtatattgc
5251 tcattacatt taatgcgtga attcattaat agcgcttaaa ttgtggtgat
5301 atacagggta tgttttctac atatctaata tgaaatacca aataactaca
5351 gagatattga tctgatggga gtgcaattct cctgccaaac ttgaggccaa
5401 aagagttgat ttgctacctt ctaagaaagg agattgtctt ggtgaaattc
5451 caagctctat tttaattgct ttgtcttctt atttttttta gtcaatgaac
5501 attggtggtt tttgaaacca tccgtgagga ctatccacga agagatagct
5551 agaggtacaa ttaacactct cccctcaata aaaatgagag tgtggctggc
5601 gtccaggaat tcctggcaca gggacatgcg ttattccggt aggtaaaata
5651 cggaatcgtt tttcagctgg ttttgaccgt gatggaaaac cgcccctcat
5701 ctttcagagg gtatccgcgc attggttttc agtatatggg tactgaaatt
5751 gtgtagtatg ggctacaaca atgtgtggat taagtcttcc ttttagtagg
5801 aatgaagggt ccagagtgga gagtgaaacc ctgggaacca gcttatgttg
5851 ggaaggtttc gaataccgct cgtaagcccc taatttctga ggtctgggag
5901 aagaagcgct ttgccaagcg atattggctt aaggtttatg cgacgataat
5951 ttgttagtgt actcaagagt attcagggtg gcccctggta tttggatgag
6001 gtccggagat gaaaaccggg gggtaattaa ccccagctaa cggcataagc
6051 tgactttcat ggaagtgtcc atgacgcatt ttaagatagg ttttagacat
6101 acccttccgg gatggatgta attcccattt cgatatttgt gattagttat
6151 taatttccct gatgagggga cctaatgcta gtaagtgttg ctgcactgaa
6201 atctataagg ttatctgatg gtaaacgtat gtttcttttt gctttttgtg
6251 gcgataggct aggtttgtcc ttttcctggt cttgctaagt tggacacaaa
6301 aatatttttg ttttcaatag agtcgaagaa tgtcctttct tccc