Sequence of DPV Shallot yellow stripe virus
Shallot yellow stripe virus gene for polyprotein, partial sequence, isolate: SYSV-SSan.
ACC No: AB669435
Dated: 2011-10-10 | Length: 1198 | CRC: 583588182
ID AB669435; SV 1; linear; genomic RNA; STD; VRL; 1198 BP.
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AC AB669435;
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DT 10-OCT-2011 (Rel. 110, Created)
DT 10-OCT-2011 (Rel. 110, Last updated, Version 1)
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DE Shallot yellow stripe virus gene for polyprotein, partial sequence,
DE isolate: SYSV-SSan.
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KW .
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OS Shallot yellow stripe virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1198
RA Chung B.N., Choi H., Yang E., Choi G.;
RT ;
RL Submitted (07-SEP-2011) to the INSDC.
RL Contact:Bong Nam Chung National Institute of Horticultural & Herbal
RL Science, Horticultural & Herbal Environment Div.; 540-41, top-dong,
RL kwonsun-gu, Suwon 441-440, South Korea
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RN [2]
RA Chung B.N.;
RT "Identification of Shallot yellow stripe virus in Shallots in Korea";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .1198
FT /organism="Shallot yellow stripe virus"
FT /host="Allium cepa var. aggregatum"
FT /lab_host="Allium ascalonicum"
FT /isolate="SYSV-SSan"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /isolation_source="shallot leaf"
FT /collected_by="Bong Nam Chung"
FT /collection_date="01-Jul-2011"
FT /db_xref="taxon:62059"
FT CDS <1. .1003
FT /codon_start=2
FT /transl_table=1
FT /product="polyprotein"
FT /protein_id="BAL03634.1"
FT /translation="YDELLHEIRLFYKWVLEQAPYNLIAQTGKAPYIAETALKKLYMDE
FT QATESELEKYIRLYQILDDRIPTPSYVSYQASETEDAANVTTDKQVGKSKDKDRDVDVG
FT TSGEFSVPKVKMLSDKMRLPRVGKKVILNGKHLLSYKPDQVDLYNTRATHAQFKTWYDA
FT VKLEYELTDEQMKIVMNGLMVWCIENGTSQNLTGVWTMMDGDNQMEYPLSPIIDNAKPT
FT FRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLREYSLARYAFDFYEMNSKTPIRAK
FT EAHMQMKAAAVRGVANRMFGLDGNISTDDENTERHTAADVNKDHHTLLGLRM"
FT mat_peptide <1. .226
FT /gene="NIb"
FT /product="RNA dependent RNA polymerase"
FT mat_peptide 227. .1000
FT /product="coat protein"
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SQ Sequence 1198 BP; 408 A; 222 C; 276 G; 292 T; 0 other;
ab669435 Length: 1198 10-OCT-2011 Type: N Check: 6413 ..
1 ttacgatgaa ttgctacacg aaatcaggtt attttacaag tgggtattag
51 agcaagcccc atacaactta atagcccaga ctggaaaagc gccatacata
101 gcagaaactg cacttaagaa attgtatatg gatgagcaag caaccgagag
151 tgagttggaa aagtacattc gactctatca aatcttggat gatcgtatac
201 caacaccgag ttatgtctca tatcaagcat cggagacaga agatgctgca
251 aatgtaacta ctgataagca agttggaaag agcaaggaca aggacaggga
301 tgtcgacgtt ggcacatcag gtgaattttc ggtcccaaag gttaaaatgt
351 tgtcagataa aatgcgatta ccacgagtcg ggaagaaggt gatacttaat
401 gggaaacacc ttctatctta taaacctgac caagtcgatc tatacaacac
451 acgagcaaca cacgcacaat ttaagacgtg gtacgacgca gtaaagctcg
501 agtacgaatt gacggacgaa caaatgaaaa ttgttatgaa tgggttgatg
551 gtatggtgca ttgagaatgg aacatcacaa aacttgacgg gggtttggac
601 aatgatggac ggagacaacc aaatggaata tccacttagt cctattattg
651 ataacgccaa accaacattt agacaaataa tggcacattt cagtgacgca
701 gctgaagcgt acattgaata tagaaatgcc acagaaaaat acatgccccg
751 gtatggactt cagcgaaact taagagaata cagcttagca cgttacgcat
801 tcgactttta tgagatgaat tcaaagacgc cgatccgcgc gaaggaagct
851 catatgcaga tgaaagcggc agcggttaga ggggtagcta accgtatgtt
901 cggcttggat ggtaacataa gcaccgatga tgagaacaca gaacgacata
951 cagcagctga tgtgaataag gatcatcaca cactgctcgg tcttcgtatg
1001 tagtaaacat atatatattt aatatatagt gtcgtgcatt atctttcgtt
1051 atatttgaat atgagcaaac atagtgtggt cacaccaccg tttgtggcat
1101 agtatatgat ataacttcgc tagcattatt tgcaccatga gacttggtgt
1151 ggtcatacca cggaaagagt caagtgttgt acgttttgct agagagac