Sequence of DPV Hokkaido virus
Hokkaido virus Small gene for nucleocapsid protein, complete cds, isolate: Kitahiyama128S/2008.
ACC No: AB675463
Dated: 2012-09-27 | Length: 1832 | CRC: 1005865900
ID AB675463; SV 1; linear; viral cRNA; STD; VRL; 1832 BP.
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AC AB675463;
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DT 15-APR-2012 (Rel. 112, Created)
DT 27-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE Hokkaido virus Small gene for nucleocapsid protein, complete cds, isolate:
DE Kitahiyama128S/2008.
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KW .
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OS Hokkaido virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
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RN [1]
RP 1-1832
RA Kariwa H., Ozaki Y., Hagiya T., Sanada T., Seto T., Taylor K., Ivanov L.I.,
RA Saasa N., Yoshii K., Tsubota T.;
RT ;
RL Submitted (13-OCT-2011) to the INSDC.
RL Contact:Hiroaki Kariwa Hokkaido University, Graduate School of Veterinary
RL Medicine; Kita-18, Nishi-9, Kita-Ku, Sapporo, Hokkaido 060-0818, Japan
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RN [2]
RA Sanada T., Seto T., Ozaki Y., Saasa N., Yoshimatsu K., Arikawa J.,
RA Yoshii K., Kariwa H.;
RT "Isolation of Hokkaido virus, genus Hantavirus, using a newly established
RT cell line derived from the kidney of the grey red-backed vole (Myodes
RT rufocanus bedfordiae)";
RL J. Gen. Virol. 93:2237-2246(2012).
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FH Key Location/Qualifiers
FH
FT source 1. .1832
FT /organism="Hokkaido virus"
FT /segment="Small"
FT /host="Myodes rufocanus"
FT /isolate="Kitahiyama128S/2008"
FT /mol_type="viral cRNA"
FT /country="Japan:Hokkaido, Kitahiyama"
FT /isolation_source="Lung of Myodes rufocanus bedfordiae"
FT /collection_date="23-Oct-2008"
FT /db_xref="taxon:1100878"
FT CDS 43. .1344
FT /codon_start=1
FT /transl_table=1
FT /gene="Small"
FT /product="nucleocapsid protein"
FT /db_xref="GOA:I0J0W5"
FT /db_xref="UniProtKB/TrEMBL:I0J0W5"
FT /protein_id="BAM11249.1"
FT /translation="MSDLKDIQEDITRHEQQLVVARQKLRDAEKAVEMDPDDVNKNTLQ
FT ARQQTVSALEDKLADFKRRMADVVSRKKMDTKPADPTGIEPDDHLKERSSLRYGNVLDV
FT NAIDIEEPSGQTADWYTIGVYIIGFTLPIILKALYMLSTRGRQTVKENKGTRIRFKDDT
FT SFEDINGIRRPKHLYVSMPTAQSTMKAEEITPGRFRTIVCGLFPTQIQVRNIMSPVMGV
FT IGFSFFVKDWPERIKEFMEKECPFIKPEVKPGTPAKEVEILKRNKVYFMQRQDVLDKNH
FT VPDIDKLIDYAASGDPTSPDNIDSPNAPWVFACAPDRCPPTCIYVAGMAELGAFFSILQ
FT DMRNTIMASKTVGTAEEKLKKKSSFYQSYLRRTQSMGIQLDQRIILLYMLEWGKEMVDH
FT FHLGDDMDPELRGLAQALIDQKVKEISNQEPLKI"
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SQ Sequence 1832 BP; 609 A; 340 C; 397 G; 486 T; 0 other;
ab675463 Length: 1832 27-SEP-2012 Type: N Check: 8136 ..
1 tagtagtaga ctccttgaag agctactacg aaaaagactg gaatgagtga
51 cttgaaagat atccaggagg atataacccg ccatgaacaa caacttgttg
101 ttgcccggca aaagcttaga gatgcagaga aagcagtgga aatggaccca
151 gatgacgtta acaagaacac actgcaagca cggcaacaaa cagtgtcagc
201 attggaagat aaacttgcag acttcaagcg aagaatggca gatgttgtgt
251 ccaggaaaaa aatggatact aagcctgctg acccgactgg gattgaacct
301 gatgaccacc tcaaggagag atctagcctc agatatggga atgtccttga
351 tgtgaatgca attgacatag aagagcctag tggtcaaaca gcagactggt
401 ataccatagg agtatatata atagggttta cactacctat tattctaaaa
451 gcactttaca tgttgtcaac ccgaggacgt caaactgtta aagaaaacaa
501 agggacgagg atccgattta aggatgatac atcatttgaa gacatcaacg
551 ggattagaag gccaaaacat ctgtatgtgt ccatgcccac agctcaatca
601 acaatgaagg ctgaagagat tacacctggg aggtttcgca ccatagtctg
651 tggccttttc ccgacacaaa ttcaagttcg gaatataatg agtcctgtca
701 tgggggttat tggattctca ttctttgtta aggactggcc tgagcgaatt
751 aaagaattca tggagaagga gtgcccattt ataaagccgg aggtgaagcc
801 aggaacccca gcaaaagagg tggagatttt aaaaagaaac aaagtttact
851 tcatgcaacg gcaagatgtg cttgataaga atcatgtccc cgacatcgat
901 aaactaattg actatgcagc ctctggagat cccacgtcac ctgacaatat
951 tgactcccca aatgccccat gggtgtttgc atgtgcccct gataggtgcc
1001 caccaacatg tatctatgtt gcaggaatgg cagagctagg ggcattcttt
1051 tccatcctgc aagatatgag aaacaccata atggcatcta aaactgttgg
1101 gacagctgaa gaaaagctaa agaaaaagtc atctttctac caatcatatt
1151 tgaggcgtac tcaatcaatg gggattcaac tcgaccaaag gataatcttg
1201 ttatacatgc ttgagtgggg aaaagagatg gtagatcact ttcatctcgg
1251 ggatgatatg gatcctgagc ttagagggct ggcacaggca ttgattgatc
1301 agaaagtaaa ggaaatttcg aaccaggaac cactaaagat atgagagaac
1351 atttatagaa tactaacccg taggttaagg ataagttagg tattactaac
1401 atgcagacat acaatataat caggttattt agatcagcag ttttaggttt
1451 atgtaggcat aggggttatc agggataatt attatataag ctatggggtt
1501 ataactggaa tttaagcatt atagccttta taagattact actaatgaca
1551 gttatgaatg tattattgca cttacactgc tgcagcattg ttgaaccagc
1601 attaaataga tatatagcca tattagttgg gatttagtat atttttacag
1651 atgttattca tattagtggg cccatacatg tgaaactgag ctatcctttt
1701 cttttcacca ctttatctac ccaacatcta cctcagtgta cttatatata
1751 tgcaattagc atatatataa gtacacaaat tactacctca acatgctgat
1801 ttcttgattg cttttcaagg agcatactac ta