Sequence of DPV Hokkaido virus
Hokkaido virus M gene for glycoprotein precursor, complete cds, isolate: Kitahiyama128M/2008.
ACC No: AB676848
Dated: 2012-09-27 | Length: 3682 | CRC: 211855833
ID AB676848; SV 1; linear; viral cRNA; STD; VRL; 3682 BP.
XX
AC AB676848;
XX
DT 24-APR-2012 (Rel. 112, Created)
DT 27-SEP-2012 (Rel. 114, Last updated, Version 2)
XX
DE Hokkaido virus M gene for glycoprotein precursor, complete cds, isolate:
DE Kitahiyama128M/2008.
XX
KW .
XX
OS Hokkaido virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-3682
RA Kariwa H., Ozaki Y., Hagiya T., Sanada T., Seto T., Taylor K., Ivanov L.I.,
RA Saasa N., Yoshii K., Tsubota T.;
RT ;
RL Submitted (21-OCT-2011) to the INSDC.
RL Contact:Hiroaki Kariwa Hokkaido University, Graduate School of Veterinary
RL Medicine; Kita-18, Nishi-9, Kita-Ku, Sapporo, Hokkaido 060-0818, Japan
XX
RN [2]
RA Sanada T., Seto T., Ozaki Y., Saasa N., Yoshimatsu K., Arikawa J.,
RA Yoshii K., Kariwa H.;
RT "Isolation of Hokkaido virus, genus Hantavirus, using a newly established
RT cell line derived from the kidney of the grey red-backed vole (Myodes
RT rufocanus bedfordiae)";
RL J. Gen. Virol. 93:2237-2246(2012).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3682
FT /organism="Hokkaido virus"
FT /segment="Medium"
FT /host="Myodes rufocanus"
FT /isolate="Kitahiyama128M/2008"
FT /mol_type="viral cRNA"
FT /country="Japan:Hokkaido, Kitahiyama"
FT /isolation_source="Lung of Myodes rufocanus bedfordiae"
FT /collection_date="23-Oct-2008"
FT /db_xref="taxon:1100878"
FT CDS 41. .3487
FT /codon_start=1
FT /transl_table=1
FT /gene="M"
FT /product="glycoprotein precursor"
FT /db_xref="GOA:I2FFC6"
FT /db_xref="UniProtKB/TrEMBL:I2FFC6"
FT /protein_id="BAM13711.1"
FT /translation="MEKSSPVCLYLLLQGLLLWSSGRARNLNELKMECPHTIGLGQGLV
FT VGSVELPPVPVQHVENLKLESSCNFDLHTSTATQQSFTKWTWETKNDLAENTQASSTSY
FT QTKSSEVNLRGLCLVPTLVIETAARTRKTIACFDLSCNQTVCQPTVFLISPIQTCITTK
FT SCLLGLGNQRIQVNYEKTYCVSGQLVEGVCFNPIHTMALSQPSHTYDIVTMMVRCFLIV
FT KKATTGDTLKIEKNFETLVQKNGCTSNNFQGYYICLVGSSSEPLYVPTLDDYRSAEVLS
FT RMAFAPHGEDHDIERNAVSAMRIVGKVTGKAPSTESSDTIQGIAFSGNPLYTSTGVLTA
FT KDDPVYVWAPGIIMEGNHSICDKKTLPLTWTGFIPLPGEIEKTTQCTVFCTLAGPGADC
FT EAYSETGIFNISSPTCLINRVQRFRGAEQQVKFVCQRVDMDITVYCNGIKKVILTKTLV
FT IGQCIYTFTSIFSLMPGVAHSLAVELCVPGLHGWATMLLLLTFCFGWILIPTITLILLK
FT ILLAFAYLCSKYNTDSKFKILIEKVKQEYQKTMGSMVCEVCQHECETAKELESHRKSCP
FT IGSCPYCLNPAEATTSALQAHFKVCKLTSRFQDNLRKSLTVYEPKQGCYRTLSLFRYRS
FT RCFVGLIWCILLVLELIVWAASAETQNLNPGWTDTAHGSGVIPMKTDLELDFSLPSSAS
FT YTYRRMLQNPANEQEKIPFHLQIDKQVIHAEIQHLGHWMDATFNLKTAFHCYGSCEKYA
FT YPWQTAGCFVEKDFEFENGWGCNPPDCPGVGTGCTACGVYLDKLKSVGKVFKIVSLRYT
FT RRACIQLGTEQTCKNVDSNDCLITTSVKVCLIGTISKFQPSDTLLFLGPLEQGGLIFKQ
FT WCTTTCQFGDPGDIMSTPTGMKCPELNGSFRKKCSFATTPVCQFDGNTVSGYKRMIATK
FT DSFQSFNVTEPHISASALEWIDPDSSLRDHINVIVARDISFQDLGETPCQVDLTTSSID
FT GAWGSGVGFNLVCSVSLTECSTFLTSIKACDSAMCYGSTTANLLRGQNTVYIVGKGGHS
FT GSKFMCCHDTKCSSAGLTAAAPHLDRVTGYNQADSDKIFDDGAPECGVSCWFKKSGEWI
FT LGVLNGNWMVVAVLVALLILSIFLFALCCPRRASYKKEHRP"
XX
SQ Sequence 3682 BP; 1128 A; 698 C; 762 G; 1094 T; 0 other;
ab676848 Length: 3682 27-SEP-2012 Type: N Check: 5024 ..
1 tagtagtaga ctccgcaaga agaagcaaat acagataaat atggaaaaat
51 ctagtccagt ttgtctgtat ctgcttcttc agggtctact actatggagt
101 agcgggagag ccagaaacct taatgaactt aagatggagt gtccccatac
151 tattggttta ggtcaaggtc tagttgttgg ctcagtggaa ttgccaccag
201 tgccggtgca gcatgttgag aatttaaaac tagagagttc ttgtaacttt
251 gatttgcaca ccagtactgc aacacagcag tcattcacaa agtggacttg
301 ggaaacaaaa aatgatcttg cagaaaatac ccaggcatca tccacaagct
351 accagacaaa gagcagtgag gtaaacttaa gaggtttatg tctagtaccg
401 actctggtca tagagacagc tgcacggact agaaagacaa ttgcatgttt
451 tgacctatca tgtaatcaaa cagtgtgcca acccactgtt tttttaatca
501 gtccaatcca aacatgtatt acgacaaaaa gctgtctttt aggccttggc
551 aatcagagaa tccaagtgaa ctatgaaaaa acttactgtg tttcaggtca
601 attagtcgaa ggtgtatgtt ttaatcctat ccataccatg gccctttcac
651 aaccgagtca tacttatgat atagttacta tgatggtccg ctgttttcta
701 attgtaaaga aagccactac aggtgacacc ctgaaaattg aaaagaattt
751 tgagacactg gtccaaaaaa acggttgcac aagcaacaat tttcaaggct
801 attacatctg tttggtagga agtagctcag aaccattgta tgtccctacg
851 cttgatgatt acaggtcggc tgaagtgtta tcaaggatgg catttgcccc
901 acatggagaa gatcatgata ttgaacgaaa tgcagttagt gcaatgagga
951 tcgtcggtaa agtgactgga aaagccccgt caactgaatc atctgataca
1001 attcaaggta tcgccttctc tggaaatcca ttatacacct caacgggagt
1051 attgacagca aaagatgatc ctgtatatgt ctgggcacca gggattatta
1101 tggaagggaa ccactcaata tgtgataaga aaacattacc attgacatgg
1151 acaggattta tacctttgcc aggtgagatt gaaaaaacaa cacagtgtac
1201 agtattctgc acactagcgg gaccaggggc tgattgtgaa gcatattcag
1251 aaactgggat ttttaatatt agttctccta catgtttaat caaccgtgtc
1301 cagcggttcc gtggtgctga acagcaagtg aaatttgtct gccaaagagt
1351 agatatggac ataactgtat actgcaatgg aattaagaaa gtgattttga
1401 ccaagacttt agttattgga caatgtatat atacatttac cagcatattc
1451 tctttaatgc ctggagttgc tcactccctt gctgttgaac tttgtgttcc
1501 tggtcttcat ggatgggcca caatgttatt gctattaaca ttttgttttg
1551 gctggattct aattcctact attacactaa ttctactgaa aatattactt
1601 gcatttgcct atctctgttc taaatataac acagactcaa agtttaagat
1651 tttaattgaa aaagttaaac aagaatacca gaagacaatg ggctctatgg
1701 tttgtgaggt atgccagcat gagtgtgaga ctgccaaaga actagaatcc
1751 catagaaaaa gttgtcctat tggttcatgc ccatactgtt taaacccggc
1801 tgaggcaact acatctgccc ttcaagccca ttttaaggtg tgtaagttaa
1851 catccaggtt tcaggataat ttaagaaaat cattaaccgt ctatgaacca
1901 aagcagggtt gttatagaac cctctctctc tttagatatc gaagccggtg
1951 ttttgtggga ttaatttggt gtattctatt ggtattagaa ctgattgtct
2001 gggcagctag tgctgagaca caaaatttaa atcctggatg gacagataca
2051 gcacatggtt ctggagttat tcctatgaaa actgaccttg agttagattt
2101 ctccttacct tcctctgcaa gttacacata cagaagaatg cttcaaaatc
2151 ctgcaaatga acaagaaaaa ataccattcc atttacagat agataaacaa
2201 gttattcatg cagaaataca acatttgggc cactggatgg atgctacatt
2251 taatctaaaa acagcatttc actgttatgg ttcttgtgag aaatacgcct
2301 acccatggca aacagctggc tgttttgttg agaaggattt tgagttcgag
2351 aatggctggg gttgcaaccc accagattgc cccggggttg gtacaggttg
2401 tactgcatgt ggtgtctatt tagataaatt aaaatcagtg ggaaaggtgt
2451 ttaaaatagt ttccttaagg tatacacgga gggcttgcat tcaactaggt
2501 acagagcaaa cttgtaagaa tgtagatagc aacgattgtc tgattacaac
2551 atcagtgaaa gtgtgtctca ttggaactat ctctaaattt caaccctctg
2601 acacactttt gttcttaggg ccactagaac aaggagggct aatatttaag
2651 caatggtgca ctacaacttg tcaatttggg gacccaggag atattatgag
2701 cactcccaca ggaatgaaat gcccagaact aaatggatca ttcagaaaga
2751 aatgttcgtt tgccaccaca cctgtttgtc aatttgatgg aaatacagtg
2801 tctggctata aaagaatgat agcaacaaag gactcatttc aatcattcaa
2851 tgttactgag ccacatattt ctgctagtgc acttgagtgg atagatcctg
2901 atagttcctt acgagatcat atcaatgtta tcgttgcacg tgatatttcc
2951 ttccaagacc tcggtgaaac cccttgccaa gttgatttaa ccacctcatc
3001 aatagatggt gcatggggtt ctggtgtggg ctttaatctt gtgtgttcag
3051 ttagtctgac agaatgctct acgtttctga catcaatcaa ggcatgtgac
3101 tctgcgatgt gctatggatc tacaacagca aacctcctaa ggggccaaaa
3151 cacagtatat attgttggga agggtgggca ttcaggctca aagttcatgt
3201 gctgccatga tactaagtgc tctagtgctg gtttgactgc agctgcacca
3251 catttagacc gtgtgaccgg atacaatcaa gcagatagtg ataagatttt
3301 tgatgatggt gctcctgaat gtggagtttc atgttggttc aaaaaatcag
3351 gagaatggat tcttggggta ttaaatggta attggatggt agtagctgtt
3401 cttgttgcac ttcttatcct atctattttt ctgtttgcac tgtgctgccc
3451 acgacgggca agctataaaa aagaacatag gccataaggt tagatatatt
3501 tgactgcttt cctatcacag acttactaac ttactaacat atgtttatta
3551 aatattaatt cccttacata tatataatct ttatatatta tccactatat
3601 agaaaaaaaa ctaacacttt actaattatt tcactgcaca ccgatcatgc
3651 ctggactttt gttcctgcgg agcatactac ta