Sequence of DPV Watermelon mosaic virus

Watermelon mosaic virus gene for polyprotein (nuclear inclusion b, coat protein), partial cds, isolate: S96-3.

ACC No: AB693979

Dated: 2012-01-27 | Length: 1115 | CRC: 1693048261

                
ID   AB693979; SV 1; linear; genomic RNA; STD; VRL; 1115 BP.
XX
AC   AB693979;
XX
DT   25-JAN-2012 (Rel. 111, Created)
DT   27-JAN-2012 (Rel. 111, Last updated, Version 2)
XX
DE   Watermelon mosaic virus gene for polyprotein (nuclear inclusion b, coat
DE   protein), partial cds, isolate: S96-3.
XX
KW   .
XX
OS   Watermelon mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1115
RA   Yamamoto H., Senda M.;
RT   ;
RL   Submitted (20-JAN-2012) to the INSDC.
RL   Contact:Hideki Yamamoto Akita Prefectural Agriculture, Forestry and
RL   Fisheries Research Center, Agriculturar Experiment Station; Yuwa-aikawa,
RL   Akita, Akita 010-1231, Japan
XX
RN   [2]
RA   Yamamoto H., Senda M.;
RT   "CP gene of WMV";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1115
FT                   /organism="Watermelon mosaic virus"
FT                   /host="Cucumis sativus"
FT                   /isolate="S96-3"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Akita"
FT                   /collection_date="1996"
FT                   /db_xref="taxon:146500"
FT   CDS             <1. .864
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /protein_id="BAL46487.1"
FT                   /translation="VSLQSGKEKETVENLDAGKDSKKDTSGKGDKPQNSQTGQGSKEPT
FT                   KAGTVSKDVNVGSKGKVVPRLQKITKKMNLPTVDGKIILSLDHLLEYKPNQVDLFNTRA
FT                   TKTQFESWYSAVKAEYDLNDEQMGVIMNGFMVWCIDNGTSPDVNGVWVMMDGEEQVEYP
FT                   LKPIVENAKPTLRQIMHHFSDAAEAYIEMRNSESPYMPRYGLLRNLRDRELARYAFDFY
FT                   EVTSKTPNRAREAIAQMKAAALAGINSRLFGLDGNISTNSENTERHTARDVNQNMHTLL
FT                   GMGPPQ"
FT   mat_peptide     <1. .12
FT                   /product="nuclear inclusion b"
FT                   /note="NIb"
FT   mat_peptide     13. .861
FT                   /product="coat protein"
FT                   /note="CP"
XX
SQ   Sequence 1115 BP; 370 A; 186 C; 263 G; 296 T; 0 other;

ab693979 Length: 1115  27-JAN-2012  Type: N  Check: 4536  ..

       1  gtgtctctgc aatcaggaaa agaaaaagaa acagtggaaa atttggatgc
      51  aggaaaggac tcgaagaaag acaccagtgg caaaggtgac aagccgcaaa
     101  actcacaaac tgggcagggt agcaaggaac caacaaaagc tggcacagtc
     151  agcaaagatg tgaacgttgg gtcaaaagga aaagtagtcc cacgattgca
     201  aaagataaca aagaagatga accttccaac agttgatggg aaaatcatac
     251  ttagcctaga ccatttgctt gagtacaaac ctaatcaagt cgatctgttt
     301  aacactcgag caacaaagac acaatttgaa tcatggtata gcgcggttaa
     351  agctgaatat gatctcaatg atgagcaaat gggtgtgatt atgaatggtt
     401  ttatggtttg gtgtatcgat aatggtacat ctccagatgt taatggagtt
     451  tgggtgatga tggatggaga agagcaagtt gagtacccat taaagccaat
     501  tgtcgaaaat gcaaagccaa ctttaaggca aatcatgcac catttttcag
     551  acgcagcaga ggcatatatt gaaatgagaa actctgaaag tccgtatatg
     601  cctagatacg gattactaag aaatttgaga gacagggaat tagcacgtta
     651  tgcttttgac ttctatgagg ttacttctaa aacaccaaat agggcaagag
     701  aagcaatagc acaaatgaag gccgcagctc tcgcgggaat taacagcagg
     751  ttatttggac ttgatggtaa tatctcgacc aattccgaaa atactgagag
     801  gcacactgca agggacgtaa atcaaaatat gcatactttg ttgggtatgg
     851  gtccaccgca gtaaagacta ggtaaactgg tcacagttag catttcgggt
     901  cgttataagt tttctataat ataatatgtc gcactttatt tagtatagtg
     951  tgattttatc acctttgtac tgtttatgtt agcgtggttc aaccaccttt
    1001  gtgtgcttta tattatagtt tatgcgtagc agggagaacc attacaatgc
    1051  cggagttgtt tgtagtgtga tttcatcacg gttaatagcc gaggtacggt
    1101  aatgtttgtt gtcct