Sequence of DPV Chinese yam necrotic mosaic virus
Chinese yam necrotic mosaic virus genomic RNA, complete genome, isolate: PES3.
ACC No: AB710145
Dated: 2012-11-30 | Length: 8224 | CRC: -683949306
ID AB710145; SV 1; linear; genomic RNA; STD; VRL; 8224 BP.
XX
AC AB710145;
XX
DT 17-AUG-2012 (Rel. 113, Created)
DT 30-NOV-2012 (Rel. 115, Last updated, Version 2)
XX
DE Chinese yam necrotic mosaic virus genomic RNA, complete genome, isolate:
DE PES3.
XX
KW .
XX
OS Chinese yam necrotic mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Macluravirus.
XX
RN [1]
RP 1-8224
RA Kondo T.;
RT ;
RL Submitted (02-APR-2012) to the INSDC.
RL Contact:Toru Kondo Aomori Prefectural Industrial Technology Research
RL Center, Agriculture Research Institute; 82-9 Tanaka, Kuroishi, Aomori
RL 036-0522, Japan
XX
RN [2]
RC DOI:10.1007/s00705-012-1429-1
RA Kondo T., Fujita T.;
RT "Complete nucleotide sequence and construction of an infectious clone of
RT Chinese yam necrotic mosaic virus suggest that macluraviruses have the
RT smallest genome among members of the family Potyviridae";
RL Arch. Virol. 157:2299-2307(2012).
XX
FH Key Location/Qualifiers
FH
FT source 1. .8224
FT /organism="Chinese yam necrotic mosaic virus"
FT /host="Dioscorea opposita"
FT /isolate="PES3"
FT /mol_type="genomic RNA"
FT /country="Japan:Aomori"
FT /collection_date="08-Nov-1997"
FT /db_xref="taxon:128818"
FT 5'UTR 1. .130
FT CDS 131. .7993
FT /codon_start=1
FT /transl_table=1
FT /product="polyprotein"
FT /protein_id="BAM36463.1"
FT /translation="MATVKSDINFKVENVDILSTHSMQMLTGKPLTIPDRTRALLVEIV
FT GKRYQNNDGNTSADFVMLDGKGAMIANMCMAITKGMKFKDYKDGMVNMPQQTSFAECDK
FT VVKCVKVQQQHLLHARLPTNDYVFGGMSKSNAIPMIKNMVPKSGSCFLSAIVAMSYFVT
FT PEFDEIFMQTINDVLGELGSWPTLQNVSKAMQFILAKVPTLSMVPLPVIAVTHEKKLIH
FT ICDQRGVPNGWHILKIGTVAELANAGFIKHTKLNGYFVGAPESITDDKMFYTRNINKVK
FT NLMTLWRSPERFVEAMANDIELTAFILLSPSLLSKLYNLLSIGSSEALKIEALERANSN
FT KIVVASLINIALQGVRVKMGETSLEKVWLHLLNVLTANLSIEESRRNTDILQACNAVYN
FT ELIKEKNYMYHCEKQIYNLTDKQFEDMFGCSRTWHSKLCDKLSHLNVAKSVQQSSVKLS
FT CFSDGITHRTIQAVTHHFIMCFIRLLIFAQHAYSILRFFFLLAACCWGFMSITNLVFMA
FT FKAVVMRKLATNYEKLLIFASIFCLYEVGRFIIKKRKANKDKAAGRTTELQAYGKSSEK
FT QMMAAMAMVTLFVHAFDMDLALMMSNSLNHVARLANMLTDTTTGWLTSGGGTQELQMKL
FT FDVALEVDETMTHEMDQQAAMDCSNETFAAWINEQVLLGNDNTRPLAYGRDDSVFYVTR
FT DNAIDVGQDMCDTKNAWSQVIGQTGSGKSTRVPLSYYNKIQTLPGRNRSILICEPTKAT
FT TQNVAAALSTQHGKQVFFKHEGKEQAGDPTIQVMTYGSAFYRSCNNPAFLSNFDAVFLD
FT ESHLVSAHALALESLLNKNNRVRKFYLSATPRKQFPEMTGSRRFEIFEHQVESGDVNDL
FT ISAIGKGTIMDATKFGEKVLVFLSGKKECDRAATKVNSTNSGVKAISLHRDNFSANYNR
FT LCHDLTQPGKIYIFATNILETGVTLNVDVVVDFGFTNTPVLNTSDKTLLLNKRRVTQAE
FT RKQRIGRAGRLREGHAIVIGKTSTPFETVSADVVFEAALLSFIHNLDVYVNAHFDQAWL
FT SSITRDQAKTMMAFKISPFIMKDLVFANGHIRSEMLEFLKPHLHHSANIKTTNYQCVNH
FT IYESWPRLDHHSLIDSMQNNEEKTKKIHKMRTPFITHDLNQLDLEMFANCVEKYRPNVL
FT TRWGRPVEQTTNVLMHVNQENIHATIRIANLLRYDYQQQIQQKKQAQQLHKDSPFAYFF
FT SSKVVDELASNIGKQVAMAQRNVSKLDKFISRLEMFATMNEMAGDVEVTQQEMHEIGQC
FT LDLQAEGTFSKDNMNVILSLETLPQTTFRDAIIIGRKKAIWGIMILCCAAFGGLAWWLL
FT WDDDEGLNNDENKDRRNEVCSKVLEMKGKSFNRDRRNPMMQDHFDAADFYMRDVEDFAS
FT LRSRRKVSRVDDAVSPVLRYAAKSRPFITLYDINVDSEVATAVFQDHNGQAFYETANPL
FT KNMDLVREHLNKHKAKDGTQIFWSDESDFDIFCKITKTDGTIMKVKLTPHEPLRMARRG
FT TQGFVEKEDCYRQTGQAEILQHPGVNLEMATRLPENKLNLQVADMIGKVSMSEGTIHCI
FT LYKDFILMPAHAMIKQLPMEISFKHFTITIDTLPEAYCFPGFDIVLIKRPAKLAPVRCH
FT ATLAQATDGMIVQMVHKKSVSDKTVLTITAPIHQRDDWRWAHQIPTVSGMCGAPVIDVA
FT SGKIVGIHVLADSLKMHNVFETFPSQLLEIINTNDKKVHQRYHQARVNDWTFLPEAHGY
FT FPSELVGLQMESFEFIEFSRDTTMYTVDNFNRDATAGGLLKSRVVEESKTLPVGVSATH
FT MSNVAYMNGLLNPRHTITGESPFWREFKRCHPKQTKGIEEFENAYAPSVLSYDAYWKDL
FT LKFNRAEFKADKIDKDILKCATLALVKQLKDSGMQQTKIRTVEEVLDDVQWGKAAGPMY
FT AMKKLELCKDLSEEDLTALAIHCRTQLLKGKNCGIWNGSMKAELRVVEKVLQKKTRVFT
FT AAPITTLIGSKFFVDDFNKQFYGTHLKASHTVGINKFQRGWEKLYNFLNVDGWLHGSGD
FT GTRFDSSLDPFWFDILYSIRSNFFCEEDRQDAKTAMAHMYREFVYTPIHTITGQVLVKK
FT LGNNSGQPSTVVDNTLILMLSFLYAYIRKTNDRTCAQINQRFKFVCNGDDNKYSVSPEF
FT HEEFSGDFSREIAELGLTYEFDDLTADITQNPYMSLVMVRTPGGIGFQLNPERIIAIVQ
FT WIKRGDVLQASQAAFAAMIEAFNDPWLFGVLHLYFVWLLCQYREEIRYAMDHDLGAVCY
FT MDAYQVYALHYDTRDDINDLQIDSASCEIEKTVVVAGSTQHISLQMDLSTPVQLPTKKP
FT SVEDKGKALATPSTTATLPDSSQGHQPVEEPNNNPDTVDEEDIEWRIPAIQKGFGHYKI
FT PKVKGKRIWNPKILKKIAHEQFTTTSQMVTTDKLEKWTEEVKRDLVVTNETDFQICLTS
FT WCLWCANNGTSSELDASQFMEVHANGQIMGIPIQIFVEPAIQHGGLRKVMRHFSGITSK
FT MLSEGGKMTAWGRKRGFTQRSMIPYAFDFFVPTDTTPKTIREQLSQSKAAAIGRGVQRV
FT MLLDGKVHGSRTSYERHTDNDQDEYEHGGAEDQRPALY"
FT mat_peptide 131. .913
FT /gene="HC-Pro"
FT /product="HC-Pro protein"
FT mat_peptide 914. .1834
FT /gene="P3"
FT /product="P3 protein"
FT mat_peptide 1835. .2026
FT /gene="7K"
FT /product="7K protein"
FT mat_peptide 2027. .3994
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 3995. .4234
FT /gene="9K"
FT /product="9K protein"
FT mat_peptide 4235. .4774
FT /gene="VPg"
FT /product="VPg protein"
FT mat_peptide 4775. .5425
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
FT mat_peptide 5426. .7126
FT /gene="NIb"
FT /product="NIb protein"
FT mat_peptide 7127. .7990
FT /gene="CP"
FT /product="CP protein"
FT 3'UTR 7994. .8224
XX
SQ Sequence 8224 BP; 2606 A; 1630 C; 1844 G; 2144 T; 0 other;
ab710145 Length: 8224 30-NOV-2012 Type: N Check: 3598 ..
1 aaaattttaa aattgaacac aactaaatcg aatcgaacgc aaagcaatca
51 aaacgaacgc tctgaactaa ggtgattttg aaatcctaaa ttttacaatt
101 ggaaaaacac attcttcaca actggaactc atggcaactg ttaagtcaga
151 cattaacttt aaggtcgaga atgttgacat tctgagcaca catagcatgc
201 aaatgctcac tgggaaacca ctcacaattc cagatcgaac ccgtgctcta
251 ctggttgaaa tcgttggaaa acgatatcaa aataatgatg gaaacacaag
301 cgctgatttc gtcatgctgg atggaaaagg agccatgatc gccaatatgt
351 gcatggcaat aactaaagga atgaaattca aagattacaa agatggcatg
401 gttaacatgc cacaacaaac atctttcgcc gagtgcgata aagttgttaa
451 gtgtgtgaaa gttcaacagc aacacctttt acacgcacgc ttgccaacaa
501 atgactacgt gtttggtgga atgtcaaagt caaatgccat tccaatgatt
551 aaaaacatgg tgcccaagtc tgggtcatgc tttctgagtg ccatcgtggc
601 gatgagctac ttcgtgacac cagaatttga tgagatattt atgcaaacaa
651 ttaacgatgt tttgggtgag cttgggtcat ggccaacctt gcaaaatgtt
701 agtaaagcca tgcagttcat actggcaaag gtgccgacgc tgagcatggt
751 gccacttcca gttatagctg tgacacatga gaagaagctt atacacatct
801 gtgatcagag aggagttccc aatggatggc acattcttaa aattgggaca
851 gtagcggaac tcgccaacgc aggtttcatc aaacatacaa agctcaatgg
901 ttatttcgtt ggcgcacctg aaagcatcac agacgacaaa atgttctaca
951 ccaggaacat caacaaagtc aaaaatctca tgacattgtg gcgatcacca
1001 gagagatttg ttgaggcaat ggctaatgat attgaattaa ctgcattcat
1051 actgttatcg ccgtccctcc tgtctaaatt gtacaatttg ttatcaattg
1101 gttcttctga agcattgaag attgaagcac ttgaacgtgc taacagcaac
1151 aagattgttg ttgcatcatt gataaacata gcacttcaag gtgtgcgagt
1201 taaaatggga gagacatcac ttgagaaggt gtggctgcat ttgcttaacg
1251 tcttaacagc aaacttgagc atagaggaga gccgccgtaa cactgacatc
1301 ctgcaagcgt gcaatgcagt ttataacgag ctcatcaagg aaaaaaacta
1351 catgtatcac tgcgaaaaac aaatttacaa cctcacagac aaacaattcg
1401 aggacatgtt tggctgctcc cgtacgtggc attccaagct ttgcgacaag
1451 ttatcacatt taaatgtcgc aaaatcagtg cagcaatcaa gcgtgaaatt
1501 aagctgcttt agtgatggaa taacacatag aacgattcaa gcggtcactc
1551 atcacttcat catgtgtttc atacgtctgc tgatctttgc gcagcatgct
1601 tactctatac taagattttt ctttcttttg gctgcttgct gctggggttt
1651 catgtcaata acaaatcttg tcttcatggc attcaaagct gtggtaatgc
1701 gaaaacttgc aactaattat gagaagttat tgatttttgc aagcattttc
1751 tgcttatatg aagtaggacg ttttataata aagaaaagga aggcaaataa
1801 ggacaaagca gcaggtcgca caactgaact tcaagcatat ggtaagagca
1851 gcgaaaaaca aatgatggct gcaatggcga tggtaacgct ttttgtgcac
1901 gcttttgaca tggacttagc tctgatgatg agcaattctt taaaccatgt
1951 cgcaagattg gctaatatgc tcacagacac aacaactggt tggttgacga
2001 gtggtggtgg cacacaggag ttgcagatga aactgtttga tgtggcgctc
2051 gaagttgatg aaacaatgac acacgaaatg gatcagcaag ctgctatgga
2101 ttgctccaat gaaacatttg ctgcttggat aaatgaacaa gtgttgcttg
2151 gtaacgataa cacccgaccc ctagcgtatg gcagagacga ctcagttttc
2201 tacgtgacac gtgataacgc cattgatgtg ggtcaggaca tgtgcgacac
2251 gaagaatgct tggtcacaag ttattggtca aacaggctct ggcaagtcaa
2301 ctcgagttcc attatcgtac tacaacaaaa tccaaacgct tcctggaagg
2351 aatcgaagta ttctgatttg tgaaccaaca aaggcaacaa cacaaaatgt
2401 tgcagcagca ttatcaacgc agcatggtaa acaagttttc ttcaagcatg
2451 agggaaaaga gcaagcaggc gacccaacta ttcaagttat gacgtacggc
2501 tcagcatttt accgatcttg caataatcct gcttttctaa gcaacttcga
2551 cgcggttttc cttgacgaat cacatctcgt ctcagcgcat gccctggctt
2601 tggaaagttt gctgaacaaa aacaataggg ttaggaagtt ctatctctct
2651 gcaacaccac gtaaacaatt tcctgagatg actggatcac gacgctttga
2701 gatttttgag catcaagttg aatcaggcga tgtcaacgac ttgatttcgg
2751 caatcggaaa aggaacaatc atggatgcga caaagttcgg agagaaagtt
2801 ctcgtgtttt tatcaggaaa gaaagaatgt gatcgagcag caacaaaagt
2851 gaactcaact aattctggtg tcaaggcgat atctctacat cgtgacaatt
2901 tcagtgcgaa ttacaatcga ttgtgtcatg atctaacaca acctgggaaa
2951 atttacattt ttgcaaccaa cattctagaa acaggtgtaa cgctaaatgt
3001 tgatgttgtc gttgatttcg gattcacgaa cacacctgtg ctaaacacct
3051 cagacaaaac gctgttgctc aacaaaaggc gggtaacaca agctgaaaga
3101 aagcaacgaa tcggaagagc tgggcgacta cgagaaggac atgcaattgt
3151 cattgggaaa acatcaacgc cctttgagac agtctcagct gacgttgtgt
3201 ttgaggcagc tcttttatca ttcatacaca acctcgatgt gtatgtcaat
3251 gcacattttg atcaagcttg gttgagttct ataactagag atcaggcaaa
3301 aacgatgatg gcttttaaaa tttcaccttt catcatgaag gatcttgttt
3351 tcgccaatgg tcatatccgt agtgagatgt tggagttttt gaagccacac
3401 ttgcaccaca gtgcaaatat caaaaccaca aattatcagt gtgtgaatca
3451 catctatgaa agttggccaa gactcgatca tcactcactg attgacagca
3501 tgcaaaacaa tgaagagaag acgaagaaaa tacacaagat gcgcactcct
3551 ttcatcactc acgatctgaa tcaactggat cttgagatgt ttgcgaattg
3601 tgttgaaaaa tacagaccaa atgttttgac tagatggggt cgacctgttg
3651 agcaaacaac gaatgttctc atgcatgtta atcaagaaaa tatccatgcc
3701 acaatccgca ttgccaactt gctgcgatat gattatcaac aacaaattca
3751 gcaaaagaag caggctcaac aattgcacaa ggattcgcct ttcgcatact
3801 ttttctcgtc gaaggttgtt gatgagttag cttcgaacat cggaaaacaa
3851 gtcgcaatgg cacaaaggaa tgtgagcaag cttgataaat ttatttctcg
3901 gttggaaatg tttgcaacga tgaatgaaat ggctggtgat gttgaagtaa
3951 cacaacaaga gatgcatgag ataggacagt gcttagactt acaggctgag
4001 ggaacttttt caaaggacaa catgaatgtc atccttagcc ttgaaacttt
4051 accacaaaca acctttcgag atgccataat cattggtcga aagaaagcca
4101 tctggggtat aatgattttg tgctgcgcgg catttggagg tttagcctgg
4151 tggttgttgt gggatgatga tgaaggacta aacaacgatg agaataaaga
4201 tagacgaaat gaggtttgtt cgaaagttct cgagatgaaa gggaagagct
4251 tcaatcgcga ccggcgcaac cccatgatgc aagaccattt tgatgccgcc
4301 gacttctaca tgcgtgatgt tgaagatttc gccagcttac gctcaaggag
4351 gaaagtttcc agagttgatg atgctgtctc gcctgtttta aggtatgctg
4401 ctaagagccg acccttcata accctgtacg atatcaatgt tgatagtgaa
4451 gtcgcaacag ctgtttttca agatcacaac ggacaagctt tctatgagac
4501 agcaaaccca ctcaaaaaca tggatttggt tagggagcac ttaaacaaac
4551 acaaggctaa agatggcaca caaatcttct ggtctgatga gtcagatttt
4601 gacatctttt gcaagataac aaaaactgat gggacaatta tgaaagtaaa
4651 gttaacccca catgaaccac ttcgcatggc aagaagggga acacaaggtt
4701 ttgttgaaaa agaggactgt tatcgccaaa ctggtcaagc tgaaattctt
4751 caacatccag gggtcaatct tgagatggca accagactgc ctgagaataa
4801 actgaatctt caagttgctg acatgattgg taaggtttcg atgagtgaag
4851 gaacaattca ctgtatcttg tacaaagatt ttatcctgat gccagcacac
4901 gcaatgatca aacaactgcc catggaaata agtttcaaac acttcactat
4951 cacaattgac acgttacctg aggcgtattg ttttcctgga tttgacatcg
5001 tgcttatcaa gcggccagca aaactagcac cagttagatg ccacgcaact
5051 ttagcgcaag ccactgatgg tatgatcgtg cagatggtgc acaaaaagag
5101 cgtgtctgat aaaacagttt taacgattac agcaccaata caccaaagag
5151 acgattggag gtgggctcat caaattccaa ccgtttctgg aatgtgtggt
5201 gctccagtaa ttgacgttgc aagtgggaaa attgttggga ttcatgtttt
5251 ggctgactca cttaagatgc acaacgtttt cgaaactttt ccatctcaac
5301 tgcttgaaat cataaacaca aacgataaaa aggtacatca gcgttaccac
5351 caagcaaggg tgaatgattg gacgtttttg cctgaggcgc acgggtactt
5401 cccgtcagag ctcgttggac ttcaaatgga atcattcgaa tttattgagt
5451 tttctcgaga tacaacgatg tacacagttg ataatttcaa cagagatgcc
5501 acggctggtg gtttgctcaa gtcacgagtt gttgaagagt caaaaaccct
5551 accagttggt gtttcggcca cacacatgtc aaacgttgca tatatgaacg
5601 gtttgctgaa cccaaggcac acaattacag gagagagccc tttctggaga
5651 gagttcaaac gttgtcatcc aaaacagact aaaggaattg aggaatttga
5701 aaatgcgtat gcgccaagtg tgttgagtta tgatgcgtat tggaaagatc
5751 tcctcaaatt caaccgtgcg gaatttaaag ctgacaaaat cgacaaagac
5801 atccttaagt gtgcgacact cgctttggta aaacaactga aggattctgg
5851 catgcaacaa acaaagattc gcacagttga agaagtgctt gatgatgtgc
5901 aatggggaaa agcggctggg ccaatgtatg caatgaagaa gcttgagctg
5951 tgtaaggatc ttagtgagga ggatttaaca gctcttgcta ttcattgccg
6001 tactcagctg ctcaaaggga agaattgtgg aatatggaat ggctcgatga
6051 aagctgagct cagagttgtc gagaaagtgc tacagaagaa aacgagggta
6101 ttcacagcag caccaatcac aacactcatc ggatcgaagt tctttgttga
6151 tgattttaac aagcaatttt atggaacgca tctcaaagca tcccacactg
6201 tcggtattaa taaatttcaa agaggttggg agaaattgta caacttctta
6251 aatgtcgacg gttggttgca tggaagtgga gatggaacgc gattcgactc
6301 atccttggat cctttttggt ttgacatttt atacagcata cgttccaatt
6351 tcttttgcga agaggataga caggatgcaa aaactgccat ggcacacatg
6401 tatcgcgagt ttgtttacac acccatccac accataacgg ggcaggttct
6451 tgtcaagaag cttggaaata acagtggaca gccaagcact gttgttgata
6501 acacgcttat cctgatgctg tcatttctat acgcatacat acggaaaaca
6551 aatgatagaa catgtgctca aattaaccag cgtttcaaat ttgtgtgtaa
6601 tggtgatgac aacaagtact cagtttcacc tgaattccac gaagaattca
6651 gcggagattt ttcaagggag atcgctgaac taggtttgac atacgaattc
6701 gatgacttga cagctgacat aacgcaaaac ccgtacatga gtctagtgat
6751 ggtacgaacg cctggtggca ttggtttcca actcaatcct gagagaatta
6801 ttgctattgt tcagtggatt aaacggggtg atgttctcca agcatcgcaa
6851 gcagcatttg cagctatgat cgaagcattc aatgatccgt ggttattcgg
6901 agttttgcac ttgtattttg tgtggctact ttgccaatac agggaagaaa
6951 ttaggtacgc tatggatcat gaccttggag ctgtttgtta catggatgcc
7001 taccaagttt atgctttgca ttacgacacg agggatgaca ttaatgattt
7051 gcaaattgat tcagccagtt gcgagattga gaaaactgtg gttgttgctg
7101 gctcaacaca gcacatcagt cttcaaatgg acctgagcac tccagtgcaa
7151 ttgccaacaa agaaaccatc tgtggaagac aaaggaaaag ctcttgccac
7201 accttcaaca acagctacat tgccagattc aagccagggg caccaaccag
7251 ttgaagaacc aaacaataac ccagacacag tggatgaaga ggacattgaa
7301 tggcgaatcc cagcaataca aaaaggtttt ggccactaca aaatcccaaa
7351 ggtcaaagga aagagaatat ggaacccaaa gattttgaag aaaatcgcac
7401 atgagcaatt cacgacgaca tcgcagatgg tgacaacaga taaattggag
7451 aaatggactg aggaggtcaa aagagatctt gtggtgacaa atgaaacaga
7501 tttccagata tgcttaacat cgtggtgtct ctggtgtgct aacaatggta
7551 catcatctga gttagacgca tcacaattta tggaagttca tgcaaacgga
7601 cagataatgg ggattccaat tcaaattttt gttgaacccg caattcagca
7651 cggaggacta cgtaaagtga tgagacattt cagtggaatc acgagcaaaa
7701 tgttgtctga agggggaaaa atgacagcgt ggggcagaaa aaggggtttc
7751 acccaaagat caatgatacc atatgccttt gatttcttcg tcccaactga
7801 tacgacgcca aaaacaatca gggagcagct gagtcaaagc aaggccgcag
7851 ctattgggcg tggtgttcaa agggtgatgc ttcttgatgg gaaagttcac
7901 gggagccgca caagttacga gagacacacg gataatgacc aggacgagta
7951 tgaacatgga ggggcggaag atcagcgccc agctttatat tagtaaggtt
8001 tgttttgcaa caaccattac tactagtatt agaagaatta agtttaattt
8051 ctttcacgat cttcactttt aacttttgcg tttatgagtt aaatgggagt
8101 ttttgtgggt ttttcttcca atgctcagca accctcaacg cactgcattt
8151 cgtcttcttc tttaagcttg agctggatgc tcagctggtt tcgcatagcg
8201 aaacttatcc tgttccatag aagg