Sequence of DPV Hokkaido virus
Hokkaido virus Large gene for RNA-dependent RNA polymerase, complete cds, isolate: Kitahiyama128L/2008.
ACC No: AB712372
Dated: 2012-09-27 | Length: 6547 | CRC: 1827876394
ID AB712372; SV 1; linear; viral cRNA; STD; VRL; 6547 BP.
XX
AC AB712372;
XX
DT 15-JUL-2012 (Rel. 113, Created)
DT 27-SEP-2012 (Rel. 114, Last updated, Version 2)
XX
DE Hokkaido virus Large gene for RNA-dependent RNA polymerase, complete cds,
DE isolate: Kitahiyama128L/2008.
XX
KW .
XX
OS Hokkaido virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-6547
RA Kariwa H., Sanada T., Ozaki Y., Hagiya T., Seto T., Yoshii K.,
RA Takashima I.;
RT ;
RL Submitted (13-APR-2012) to the INSDC.
RL Contact:Hiroaki Kariwa Hokkaido University, Graduate School of Veterinary
RL Medicine; Kita-18, Nishi-9, Kita-Ku, Sapporo, Hokkaido 060-0818, Japan
XX
RN [2]
RA Sanada T., Seto T., Ozaki Y., Saasa N., Yoshimatsu K., Arikawa J.,
RA Yoshii K., Kariwa H.;
RT "Isolation of Hokkaido virus, genus Hantavirus, using a newly established
RT cell line derived from the kidney of the grey red-backed vole (Myodes
RT rufocanus bedfordiae)";
RL J. Gen. Virol. 93:2237-2246(2012).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6547
FT /organism="Hokkaido virus"
FT /segment="Large"
FT /host="Myodes rufocanus bedfordiae"
FT /isolate="Kitahiyama128L/2008"
FT /mol_type="viral cRNA"
FT /country="Japan:Hokkaido, Kitahiyama"
FT /isolation_source="mixture of lung and kidney of Myodes
FT rufocanus bedfordiae"
FT /collection_date="23-Oct-2008"
FT /db_xref="taxon:1100878"
FT CDS 37. .6504
FT /codon_start=1
FT /transl_table=1
FT /gene="Large"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="BAM31229.1"
FT /translation="MEKYREIHERVKEAVPGETSAVECLDLLDRLYAVRHDVVDQMIKH
FT DWSDNKDREQPIGHVLLMAGVPNEVIQGMEKRVIPGSPSGQILRSFFKMTPDNYKITGN
FT LIEFIEVTVTADVARGVREKVLKYQGGLEFIEHLLQIEAQKGNCQSGFKIKFDVVAIRT
FT DGSNISTQWPSRRNEGVVQAMRLIQADINFVREHLIKNEERGALEAMFNLKFHVTGPKV
FT RTFDVPNYRPQQLCEPSLDNLVDYCKNWLQTDHAFAFKEVTGQRVFNVFREEEEIHASK
FT YGHSRKPRNFLLCQISLQAPYLPSTIASDQYDTRLACSEILKNYPETPLQLLARDMAYK
FT YITLDKDDIINYYNPRAYFKTTQNVKEPGTFKLNLSNMDPKSKALLDVISKDSKKGVFG
FT ELIDSIDVASQIQQNECAKIIEKILSDLEVNLGESTEGLGQPKKTTGVDDILRKFYDNE
FT LVKYMISVIRKTTAWHLGHLLRDITESLIAHAGLRRSKYWSAHGYAYGSVLLCILPSKS
FT LEVAGSYIRFFTVFKEGLGLIDVDNLDSKVDIDGVTWCFSKIISLDLNRLLALNIAFEK
FT SLLATATWFQYYTEDQGHFPLQHALRSVFAFHFLLSTAQKMKLCAIFDNLRYLIPAVTS
FT TYSGFEPLIRKFFERPFKSALEVYLYGVIKTLLVNLAQNNKIRFYSKVRLLGLTVDQST
FT IGASGVYPSLMSRVIYKHYRSLISEATTCFFLFEKGLHGNLTEEAKIHLETVEWARKFR
FT EKERAFGSYIMEEGYHIQDVLNQQITVEQQLFCQEVVELAAQELNTYLHAKSQVMAANI
FT MNKHWDRPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNQSQNNPTVLELYEQ
FT TKKQKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYYDAIAKVVPEEYISYGGER
FT KILNIQQALEKALRWASGESEIQSSLGHTIKLKRKLMYVSADATKWSPGDNSAKFKRFT
FT QALYDGLRDDKLKNCVVDALRNIYETDFFISRKLHRYIDNMGDLSDEVLDFLSFFPNKV
FT SASIKGNWLQGNLNKCSSLFGAAISLLFKRVWSKLYPELECFFEFAHHSDDALFIYGYL
FT EPVDDGTEWFLYVTQQIQAGNLHWHAVNHEMWKSMFNLHEHILLMGSIKISPKKTTVSP
FT TNAEFLSTFFEGCAVSIPFIKILLGSLSDLPGLGYFDDLAAAQSRCVKALDMGACPQLA
FT QLGIVLCTSKVERLYGTAPGMVNNPTAYLKVDRNLIPIPLGGDGSMSIMELATAGIGMA
FT DKNILKNAFITYKHARKDNDRYILGLFKFLMSLSDDIFQHDRLGEFSFVGKVQWKVFTP
FT KSEFEFYDQYSRKYLELWSEQHPVYDYIIPRGRDNLLVYLVRKLNDPSIVTAMTMQSPL
FT QLRFRMQAKQHMKVCKLDGEWVTFREVLAAADAFASEYKPTNQDMELFQTLVNCTFSKE
FT YAWRDFLNEVQCDVLTTRQIHRPKVARTFTVKERDQAIQNPITAVIGYKYANKVDEISD
FT VLDSAIHPDSLSTDLQLMREGVYRELGLDISQPNVLKKVAPLLYKSGKSRVVIVQGNVE
FT GTAESICSYWLKAMSLVKTIKVKPKKEVLKAVSLYGRKEKVGDLTHLAAMRLCIEVWRW
FT CKANEQDAITWLKCLMFENKTLEQWVDFFCSRGVLPVDPEIQCLGLLIYDLKGQKGLLQ
FT IQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGIDCARLEIFWDKKEYILETS
FT ITQRNVLKILMEEVTKELLKCGMRFKTEQVNSSRSVVLFKTESGFEWGKPNVPCIVYRN
FT CALRTGLRVRHPTNKAFMITIQANGFRAMAQLDEENPRFLLAHAYHNLKDVRYQALQAV
FT GNVWFKMTQHKLFINPIISAGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNELL
FT ALINPQNVLNLDGIEETSEGYSTVSTISSTQWSEEVSLTMDDSDDDENSQLDYTIDLDD
FT IDFETIDLKEDIEHFLQDESAYTGDLLIQTEETEIKKLRGMVKILEPVKLIKSWVSKGL
FT SIDKIYNPVNIILMTRYMSKQFNFHAKQLSLMDPYDLTEFESIVKGWGECVKDRFIELD
FT QEAQRKVSEERVLPEDVLPDSLFSFRHADILLKRLFPRDSASSFY"
XX
SQ Sequence 6547 BP; 2159 A; 1035 C; 1441 G; 1912 T; 0 other;
ab712372 Length: 6547 27-SEP-2012 Type: N Check: 5426 ..
1 tagtagtaga ctccgagata gagaagttta ctacaaatgg agaaatacag
51 agagatccac gagagagtca aggaggctgt tccaggggaa acatcagcag
101 tagagtgttt agacttgtta gaccgattgt atgcagttag gcatgatgtt
151 gtagatcaga tgataaaaca tgactggtca gataataaag acagggaaca
201 accgattggt catgttctat taatggcagg tgtgccaaat gaggttatac
251 aagggatgga aaagagggta attcctggaa gtccgagtgg tcagatacta
301 aggtctttct tcaaaatgac accggataat tataagatca caggaaatct
351 gattgagttc attgaagtaa ctgtgacagc tgatgttgcc cggggggtta
401 gggagaaggt tcttaagtac caggggggct tagagtttat agagcattta
451 ttgcagattg aagcacagaa gggaaattgc cagtcagggt ttaagataaa
501 atttgatgtt gtagccatta gaacagatgg ttccaatata tctacacaat
551 ggcccagccg aagaaatgag ggtgttgtcc aagcaatgag gttaatacaa
601 gctgacatta actttgtaag ggaacatttg attaaaaatg aggaaagagg
651 agcactcgaa gccatgttca atttaaaatt tcatgtaaca ggaccaaaag
701 tgaggacatt tgatgttcct aattatagac cacaacaact ttgtgaaccc
751 tctctcgata acttagtgga ctattgcaag aattggttac agacagatca
801 tgcttttgca ttcaaggaag taactggaca acgagtattt aacgtgttca
851 gggaggaaga agaaatccat gcatcaaaat atggtcactc aagaaaacca
901 agaaattttt tactgtgcca gatcagtctc caggcacctt atttaccatc
951 aactatagct tcagaccaat atgatacacg tcttgcttgt agtgaaatac
1001 tgaagaatta tccagagact ccattacagt tgttagcaag ggatatggca
1051 tacaaatata taacattaga taaagatgat attatcaact attataatcc
1101 aagagcctac tttaagacta cacagaatgt taaggaacca gggacattta
1151 aactaaactt atcaaatatg gacccgaaat caaaggcttt attggatgtg
1201 atatcaaaag actcaaagaa gggtgtcttt ggtgaattaa ttgatagcat
1251 agatgttgcc agtcagattc agcagaatga gtgtgcaaaa atcatagaaa
1301 agattctgtc tgatttggag gtaaacctag gagagtcaac agagggtttg
1351 ggtcagccta aaaagacaac aggagtggat gacatactca ggaagttcta
1401 tgataatgag cttgtcaaat acatgatatc tgtgataaga aagactactg
1451 catggcacct tgggcatttg ttacgcgata ttactgaatc cttaattgcc
1501 catgcagggc ttagaagatc taaatattgg tctgctcatg gatatgctta
1551 tggaagtgtt ctcttatgta ttttgccatc taaatcatta gaagttgctg
1601 ggtcatatat caggtttttt acagtattta aagaaggttt gggcttgatt
1651 gatgttgata accttgattc aaaagttgac attgatgggg taacatggtg
1701 ttttagcaag ataattagtt tagatttaaa cagattacta gcattgaata
1751 ttgcatttga aaagtcactg ttggccacag caacatggtt tcaatactat
1801 acagaagatc aaggacactt cccactccag catgcattaa gatctgtatt
1851 tgcctttcac tttctattat caacagccca aaagatgaag ctatgtgcaa
1901 tctttgataa tttgcggtat ttgatcccag cagtcacgtc aacatactca
1951 ggtttcgaac cattaatccg gaaattcttt gaaagacctt ttaaaagtgc
2001 attagaagta tatttatatg gggttatcaa gacattgttg gtcaatctag
2051 cacagaataa caagattagg ttctattcaa aggttagact tttaggtttg
2101 actgttgacc aatcaacaat tggagctagc ggtgtttacc catcattaat
2151 gtctagagtc atttataaac attatcggag tttgatctct gaagctacaa
2201 cctgtttctt cctttttgaa aagggccttc atgggaattt aacggaagag
2251 gcaaagatcc atttagagac agttgagtgg gctaggaagt ttcgagagaa
2301 agaaagggcc tttggaagct atataatgga ggaaggttat catatacaag
2351 atgttttaaa tcagcaaata actgtagagc agcaattgtt ctgtcaagag
2401 gtggttgagt tagctgctca agaattgaac acataccttc atgcaaagtc
2451 acaagttatg gcagccaata ttatgaataa acattgggac aggccatatt
2501 ttagccaaac caggaatata agcttgaaag gaatgtcagg agcattacag
2551 gaagatgggc atctagcagc aagtgttact ttaatagaag caatccgatt
2601 cttaaaccag tcacaaaata atccaacagt tttggaactg tatgagcaaa
2651 ccaaaaaaca aaaggctcaa gctaggattg tcaggaagta tcaaagaact
2701 gaagcagacc gagggttttt tattactaca ctaccaacaa gggtaagact
2751 ggagattata gaagattatt atgatgctat agcaaaagta gtgcctgaag
2801 agtacatttc atatggaggg gaaagaaaga tattgaacat acaacaagcg
2851 cttgaaaagg cactccgatg ggcatcagga gagagtgaaa tacagtcatc
2901 tctcggacat acaattaagt tgaagagaaa attaatgtat gttagtgctg
2951 acgctacgaa gtggtctcca ggtgataatt ctgctaagtt taaaaggttt
3001 actcaagcat tatatgatgg acttcgtgat gataagttaa aaaattgtgt
3051 tgttgatgcc ttgagaaata tctatgaaac tgactttttt atttcgagaa
3101 aactgcatag atatatcgat aatatggggg atttatcaga tgaggttttg
3151 gacttcttat cctttttccc gaataaagtt tctgcatcaa tcaaaggaaa
3201 ttggctccag ggaaacttga ataaatgctc ttcactattt ggtgctgcta
3251 tctcacttct tttcaaaagg gtatggtcta agttgtaccc tgagttagaa
3301 tgtttttttg agtttgctca tcattcagat gatgcattgt ttatatatgg
3351 ttatttagag ccagttgatg atggtactga atggtttctt tatgtcacac
3401 aacagataca agcaggaaat ctgcactggc atgccgtcaa ccatgaaatg
3451 tggaaaagta tgttcaactt gcatgagcac attttattaa tgggttctat
3501 aaagatttca ccaaagaaga ccactgtgtc acccacaaat gcagaattcc
3551 tttctacttt ctttgaaggc tgtgctgtat caattccctt tattaaaata
3601 ctcttaggtt cactttctga tctgcctggc ttgggctatt ttgatgattt
3651 agcagcagca cagagtcgct gtgttaaagc ccttgacatg ggtgcttgtc
3701 cccagttagc acagttgggt attgtcctat gtacaagtaa ggttgaacga
3751 ttgtatggaa cagcccctgg gatggtcaat aatcccactg cttatttgaa
3801 ggtagacaga aatttaatac ctatcccttt gggtggggat ggctcaatgt
3851 ccatcatgga attagctaca gcagggatag gaatggctga taaaaatatc
3901 ttaaagaatg cattcattac ctataagcat gcacggaagg ataatgatag
3951 gtatatactt ggtttattta agtttctgat gtctttatcc gatgatatct
4001 ttcagcatga tcgattaggt gagtttagtt ttgtgggaaa agtccaatgg
4051 aaggttttta ccccaaaaag tgaatttgaa ttttatgacc agtattctag
4101 aaagtatctg gagctttgga gtgagcagca cccggtctat gactatatta
4151 tcccacgtgg aagagacaat ctcttggtgt atttggtccg gaaattaaat
4201 gacccaagta tagtaacagc catgacaatg caatcaccac tacagttaag
4251 atttcgaatg caggctaagc aacatatgaa agtctgtaaa ctagatggtg
4301 agtgggtaac ttttagagaa gttctagctg cagcagatgc atttgcttct
4351 gagtacaagc caacaaacca ggacatggag ttatttcaaa ctttagtcaa
4401 ttgtacattt tcaaaagaat atgcatggag agatttcctg aatgaagtac
4451 aatgtgatgt tctaacaaca aggcagattc acaggcctaa ggtggcacgt
4501 acttttacag ttaaagagag agatcaggca atacaaaatc ctattactgc
4551 tgtgattggc tacaaatatg caaataaagt tgatgagata agtgatgtat
4601 tggatagtgc aattcatcct gattccttat cgactgacct tcaattaatg
4651 agagaaggtg tctaccgaga gctaggactt gacattagtc aaccaaacgt
4701 tttaaagaaa gtggctcctc ttttatacaa atcaggtaaa tcaagagttg
4751 tgattgtaca aggtaatgtt gagggtacag cagaatctat atgcagttat
4801 tggttgaagg caatgtcgtt agtaaagaca atcaaggtta aacctaaaaa
4851 ggaagtatta aaggctgtct cattatatgg gcggaaagag aaagttggtg
4901 accttactca tttggctgca atgagattgt gtatagaagt atggaggtgg
4951 tgcaaggcaa atgaacagga tgctataaca tggctgaagt gtttaatgtt
5001 tgagaataaa actctagaac aatgggttga tttcttttgc tctagggggg
5051 tattacctgt tgatcctgaa attcagtgtt taggtttgtt aatatatgat
5101 ctaaaggggc agaagggtct cttacaaata caggctaatc gtagagcata
5151 ctcagggaaa cagtacgatg catattgtgt ccaaacgtat aatgaggaaa
5201 caaagcttta tgaaggggat ctgagggtaa cctttaattt tggcattgac
5251 tgtgctcgtc tggagatttt ctgggataaa aaggaatata tactcgaaac
5301 atccataact cagaggaatg tactgaaaat attaatggaa gaggtaacaa
5351 aggagctgtt gaagtgtggt atgagattca agacagagca agtaaattcc
5401 tcaaggagtg tagtgctatt caagactgaa agtggtttcg agtggggaaa
5451 gcctaatgta ccctgcatcg tatatagaaa ctgtgcatta cggactggtc
5501 tacgagttag acatccaacc aacaaagcgt tcatgatcac tattcaggct
5551 aatgggttta gggcaatggc acaattagat gaggagaacc cacgattttt
5601 acttgcacat gcttatcata atcttaagga tgtgagatac caggccttac
5651 aggcagtagg gaatgtttgg tttaaaatga cacagcataa gctattcata
5701 aatccaataa tttcagcagg gttattagag aattttatga aaggtttacc
5751 ggcagccatt ccaccagctg catattcatt aataatgaat aaagcaaaaa
5801 tctctgtgga tttgttcatg ttcaatgaac tattagcatt gatcaaccca
5851 caaaatgttt tgaatttaga tgggattgaa gaaacctcag aaggttactc
5901 tactgtaagt actatttcaa gcacacaatg gtcagaagaa gtcagtctca
5951 cgatggatga cagtgatgat gatgaaaact cacaattaga ctacactatt
6001 gaccttgatg atatagactt tgagacaata gatcttaaag aagatataga
6051 acatttctta caggatgagt cagcatatac aggagatttg cttattcaga
6101 ctgaggaaac tgaaataaaa aagctaagag ggatggtaaa gattttagaa
6151 ccagtaaaac taatcaaaag ttgggtatct aaggggcttt ccattgataa
6201 gatttacaat cctgtaaata tcatattgat gacacgatat atgtcaaagc
6251 agtttaactt tcatgcaaag caactttcat taatggaccc ttatgacctt
6301 actgaatttg agagtatagt gaaggggtgg ggtgaatgtg ttaaagatag
6351 gtttattgaa ttagaccagg aagcccaaag aaaagtttct gaagagaggg
6401 ttctcccaga ggatgtgtta ccagattccc ttttctcatt caggcatgct
6451 gatatattat taaaacgatt gttcccaagg gactcagcct cttcctttta
6501 ttaacagact atttttctta ttgctctttt ctcggagcat actacta