Sequence of DPV Chinese artichoke mosaic virus

Chinese artichoke mosaic virus gene for polyprotein, partial cds, isolate: CP1-3.

ACC No: AB719457

Dated: 2012-05-10 | Length: 879 | CRC: 1207390895

                
ID   AB719457; SV 1; linear; genomic RNA; STD; VRL; 879 BP.
XX
AC   AB719457;
XX
DT   10-MAY-2012 (Rel. 112, Created)
DT   10-MAY-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Chinese artichoke mosaic virus gene for polyprotein, partial cds, isolate:
DE   CP1-3.
XX
KW   .
XX
OS   Chinese artichoke mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-879
RA   Yamamoto H., Senda M.;
RT   ;
RL   Submitted (08-MAY-2012) to the INSDC.
RL   Contact:Hideki Yamamoto Akita Agricultural Experiment Station, Plant
RL   Protection Group; Yuwa-aikawa, Akita, Akita 010-1231, Japan
XX
RN   [2]
RA   Yamamoto H., Senda M.;
RT   "Nucleotide sequences of potyviral coat protein genes";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .879
FT                   /organism="Chinese artichoke mosaic virus"
FT                   /host="Stachys affinis"
FT                   /isolate="CP1-3"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Akita, Yuzawa, Minase"
FT                   /db_xref="taxon:218282"
FT   CDS             <1. .879
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /note="NIb-CP precursor"
FT                   /protein_id="BAM15280.1"
FT                   /translation="VHHQADETIDAGQEEDKKPKRGGLKQSEVVESGGKKQNEAGSSQG
FT                   PETQQGEAEKDRDIDAGTNGTIVIPRVQAITKKMRLPKVKGKVVLNIQHLIDYSPDQDD
FT                   LFNTRSSQEQFSYWYDNVKASYDLDDASMQVIMNGLMVWCLNNSTSPNLKGNWVMMDGD
FT                   EQVEYPLQPILEYAQPTFRMIMRHFSDAAEAYIVKENTKKPYMPRYGLIRNLRDYSCAR
FT                   YAFDFYEMNSKTPVRAKEAHLQMKAAALRGAANEMFGLDGKVGETEERTERHTAADVNK
FT                   NMHSLLGVRHG"
FT   mat_peptide     <1. .12
FT                   /gene="NIb"
FT                   /product="nuclear inclusion b"
FT   mat_peptide     13. .876
FT                   /gene="CP"
FT                   /product="coat protein"
XX
SQ   Sequence 879 BP; 293 A; 165 C; 221 G; 200 T; 0 other;

ab719457 Length: 879  10-MAY-2012  Type: N  Check: 4644  ..

       1  gtccatcatc aagcagatga aacaattgat gctggacaag aggaggataa
      51  gaagcctaag aggggcggat tgaagcaatc agaggtggtt gagtccggag
     101  gcaaaaagca gaacgaagct gggagctcac aaggccccga aacacaacag
     151  ggagaagcgg agaaagaccg cgacattgat gcaggaacga atggaacaat
     201  tgttattcca agagttcaag caattactaa aaagatgcga ctcccaaaag
     251  tcaaaggaaa ggttgtacta aacatccagc accttattga ctacagtcct
     301  gatcaagatg acttgtttaa cactcgatcc tcgcaagagc aattttcata
     351  ttggtatgat aatgttaaag caagttatga tcttgatgat gcgtcaatgc
     401  aggtcattat gaatggcttg atggtgtggt gcttaaacaa tagcacttcg
     451  ccgaatttga aagggaactg ggtcatgatg gatggggatg aacaagttga
     501  atacccattg caaccaattc ttgagtatgc tcagccaaca tttcgcatga
     551  tcatgcgtca ctttagtgat gcagctgaag catacattgt aaaggagaat
     601  accaaaaagc catacatgcc gcgatacgga ttgatacgta atttgcgcga
     651  ttatagctgt gctcgatatg ctttcgattt ttatgagatg aattcgaaaa
     701  caccagttag agcaaaggag gcacacctcc aaatgaaagc agcagctctg
     751  cgcggtgcag ctaatgaaat gtttggactt gatggtaaag ttggagaaac
     801  agaagagaga acagaacgtc atacagcagc cgatgttaat aagaacatgc
     851  actcactcct tggggtgcgc cacggttga