Sequence of DPV Gentian Kobu-sho-associated virus
Gentian Kobu-sho-associated virus gene for hypothetical polyprotein, putative RNA-dependent RNA polymerase domain, partial cds, isolate: Ty5.
ACC No: AB796394
Dated: 2013-03-15 | Length: 1733 | CRC: -234216998
ID AB796394; SV 1; linear; genomic RNA; STD; VRL; 1733 BP. XX AC AB796394; XX DT 15-MAR-2013 (Rel. 116, Created) DT 15-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Gentian Kobu-sho-associated virus gene for hypothetical polyprotein, DE putative RNA-dependent RNA polymerase domain, partial cds, isolate: Ty5. XX KW . XX OS Gentian Kobu-sho-associated virus OC Viruses; unclassified viruses. XX RN [1] RP 1-1733 RA Atsumi G., Sekine K.T.; RT ; RL Submitted (07-MAR-2013) to the INSDC. RL Contact:Go Atsumi Iwate biotechnology research center; 22-174-4 Narita, RL Kitakami, Iwate 024-0003, Japan URL :http://www.ibrc.or.jp XX RN [2] RA Atsumi G., Tomita R., Kobayashi K., Sekine K.T.; RT "Prevalence and genetic diversity of Gentian Kobu-sho-associated Virus in RT Japanese gentian"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1. .1733 FT /organism="Gentian Kobu-sho-associated virus" FT /host="Gentiana triflora" FT /cultivar="Giovanni" FT /isolate="Ty5" FT /mol_type="genomic RNA" FT /country="Japan:Iwate, Morioka, Tamayama" FT /isolation_source="Kobu-sho-affected stem" FT /collection_date="2009" FT /db_xref="taxon:1150353" FT CDS <1. .>1733 FT /codon_start=1 FT /transl_table=1 FT /product="hypothetical polyprotein" FT /note="putative RNA-dependent RNA polymerase domain" FT /protein_id="BAM99935.1" FT /translation="VCRDKVETKAKKNIDNGRLLIPDCTDEIDPRGKSYKYLPYTKKEE FT ARRARQDKLRQASNIAPRNIRFAEFVQRFADLIILGPVQKYHAHKEKLYYGSSTGTPLW FT RLGNLTKALHDVYAPRHQQEFWESSELGCDVCGYYNNSSCSCLIVDGKLCQVHGLKHGE FT TQSSKCKECKTHRGDSANEQEWFKNIMNNKTELLSEQAYIRMYDPSFRKGLERKALKAM FT IASGDFSGFDGTVSKTDLVLNYIFYKNIYRSEYHLMLKTRWEHWMWALVINDHGHVIVS FT DGQRSSGDQDTSFGNTMINGIYHFASTALSLGISIEEAATPIGEVWFRSDFDYTTPKYK FT KLYLHRISHISDGDDNLHFGSKEDIEKFDKNGPMLLERAGKKIRCGTRSGYDLTESYSG FT ISYCSHNYNRCRIGKISTPVEMAEMSGVAEMVPIDCVPKTFKKVDNDNLPLQHLRDKKL FT GLRVEYMPARAMSEVIGKLVMTMKGSTANMDFTRDYGSSTKEQKRGQKNEEAIAITRGK FT LLSYLLNYCQYSVVRILVMSAFSIIGDGVCNLQELKRRYNVPSIAKTIGSALRGVFNIS FT TL" XX SQ Sequence 1733 BP; 567 A; 358 C; 433 G; 375 T; 0 other; ab796394 Length: 1733 15-MAR-2013 Type: N Check: 4957 .. 1 gtatgtagag ataaagtgga gactaaggcc aaaaagaaca tcgataatgg 51 tcgtctacta ataccagatt gtacggacga gattgacccg agagggaaat 101 cgtacaagta cttgccttat acaaagaagg aagaggctag aagagccagg 151 caggataagc tgagacaggc gagcaatatc gcgccaagga acatccgctt 201 tgcagaattc gtacaacgct ttgcggatct gataatttta ggacctgtgc 251 agaaatatca cgcacataaa gagaaattat attatggatc atcaacaggg 301 acgcctcttt ggaggctagg aaacttgacg aaagcgttgc acgatgtcta 351 tgcacctaga caccaacaag agttctggga atcttctgaa cttgggtgcg 401 atgtatgcgg ctattacaac aactcatcat gttcttgttt gattgttgat 451 gggaagttgt gccaagtaca tggccttaag cacggggaga ctcagtcttc 501 aaaatgcaaa gagtgtaaaa cacacagagg cgactcggca aacgagcaag 551 agtggttcaa gaacatcatg aacaacaaaa cagaactgct cagtgaacaa 601 gcctatatcc gcatgtacga ccctagcttt aggaaagggc tagagaggaa 651 agcgctgaaa gcgatgatag caagtggaga tttctccggg ttcgacggaa 701 cagtgtcaaa aacagatttg gtattaaatt atatattcta caagaacatc 751 tatagaagtg aataccacct catgctcaaa acccggtggg aacattggat 801 gtgggcgtta gtcataaacg accatgggca cgtcatcgtc agcgacggac 851 agagatcctc aggagatcaa gacacaagtt ttggcaatac aatgatcaat 901 ggtatttacc attttgccag tacagcactc tccttgggga tatcaattga 951 agaagcggca actcccattg gggaagtatg gttccgaagt gactttgact 1001 acacaacacc gaagtacaag aaattgtact tacatagaat cagtcacatc 1051 tcggacggag atgacaacct gcacttcggg agcaaggaag acatagagaa 1101 atttgacaaa aacggaccta tgctcctgga acgtgcagga aagaagatca 1151 gatgcggaac tcgatctgga tacgacctga cggaaagcta ctcagggatc 1201 agttactgca gtcataatta caaccgatgc agaatcggaa aaatttcaac 1251 gccagtcgaa atggcggaaa tgtcgggggt ggccgaaatg gtgcccatcg 1301 actgtgtccc taaaacattc aagaaagtgg acaatgacaa tctcccgttg 1351 caacatctga gggacaaaaa actaggcctc cgggtcgaat atatgccagc 1401 cagagctatg agcgaagtaa tcggcaagct ggtaatgaca atgaaaggca 1451 gcactgccaa catggatttc acaagagact acggctcatc aacgaaagag 1501 cagaagaggg gccaaaagaa cgaagaggcc attgccataa cacgaggcaa 1551 actgctcagc tacctactga attattgtca gtattcagtg gtcagaattt 1601 tagtgatgag tgcgttttcc attattggag acggtgtctg caacttgcag 1651 gaattaaagc gtcggtacaa cgtgcctagc attgccaaga caattggctc 1701 tgctttgcgc ggggtattca acatctcgac gct