Sequence of DPV Gentian Kobu-sho-associated virus

Gentian Kobu-sho-associated virus gene for hypothetical polyprotein, putative RNA-dependent RNA polymerase domain, partial cds, isolate: Ty5.

ACC No: AB796394

Dated: 2013-03-15 | Length: 1733 | CRC: -234216998

                
ID   AB796394; SV 1; linear; genomic RNA; STD; VRL; 1733 BP.
XX
AC   AB796394;
XX
DT   15-MAR-2013 (Rel. 116, Created)
DT   15-MAR-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Gentian Kobu-sho-associated virus gene for hypothetical polyprotein,
DE   putative RNA-dependent RNA polymerase domain, partial cds, isolate: Ty5.
XX
KW   .
XX
OS   Gentian Kobu-sho-associated virus
OC   Viruses; unclassified viruses.
XX
RN   [1]
RP   1-1733
RA   Atsumi G., Sekine K.T.;
RT   ;
RL   Submitted (07-MAR-2013) to the INSDC.
RL   Contact:Go Atsumi Iwate biotechnology research center; 22-174-4 Narita,
RL   Kitakami, Iwate 024-0003, Japan URL    :http://www.ibrc.or.jp
XX
RN   [2]
RA   Atsumi G., Tomita R., Kobayashi K., Sekine K.T.;
RT   "Prevalence and genetic diversity of Gentian Kobu-sho-associated Virus in
RT   Japanese gentian";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1733
FT                   /organism="Gentian Kobu-sho-associated virus"
FT                   /host="Gentiana triflora"
FT                   /cultivar="Giovanni"
FT                   /isolate="Ty5"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Iwate, Morioka, Tamayama"
FT                   /isolation_source="Kobu-sho-affected stem"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:1150353"
FT   CDS             <1. .>1733
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="hypothetical polyprotein"
FT                   /note="putative RNA-dependent RNA polymerase domain"
FT                   /protein_id="BAM99935.1"
FT                   /translation="VCRDKVETKAKKNIDNGRLLIPDCTDEIDPRGKSYKYLPYTKKEE
FT                   ARRARQDKLRQASNIAPRNIRFAEFVQRFADLIILGPVQKYHAHKEKLYYGSSTGTPLW
FT                   RLGNLTKALHDVYAPRHQQEFWESSELGCDVCGYYNNSSCSCLIVDGKLCQVHGLKHGE
FT                   TQSSKCKECKTHRGDSANEQEWFKNIMNNKTELLSEQAYIRMYDPSFRKGLERKALKAM
FT                   IASGDFSGFDGTVSKTDLVLNYIFYKNIYRSEYHLMLKTRWEHWMWALVINDHGHVIVS
FT                   DGQRSSGDQDTSFGNTMINGIYHFASTALSLGISIEEAATPIGEVWFRSDFDYTTPKYK
FT                   KLYLHRISHISDGDDNLHFGSKEDIEKFDKNGPMLLERAGKKIRCGTRSGYDLTESYSG
FT                   ISYCSHNYNRCRIGKISTPVEMAEMSGVAEMVPIDCVPKTFKKVDNDNLPLQHLRDKKL
FT                   GLRVEYMPARAMSEVIGKLVMTMKGSTANMDFTRDYGSSTKEQKRGQKNEEAIAITRGK
FT                   LLSYLLNYCQYSVVRILVMSAFSIIGDGVCNLQELKRRYNVPSIAKTIGSALRGVFNIS
FT                   TL"
XX
SQ   Sequence 1733 BP; 567 A; 358 C; 433 G; 375 T; 0 other;

ab796394 Length: 1733  15-MAR-2013  Type: N  Check: 4957  ..

       1  gtatgtagag ataaagtgga gactaaggcc aaaaagaaca tcgataatgg
      51  tcgtctacta ataccagatt gtacggacga gattgacccg agagggaaat
     101  cgtacaagta cttgccttat acaaagaagg aagaggctag aagagccagg
     151  caggataagc tgagacaggc gagcaatatc gcgccaagga acatccgctt
     201  tgcagaattc gtacaacgct ttgcggatct gataatttta ggacctgtgc
     251  agaaatatca cgcacataaa gagaaattat attatggatc atcaacaggg
     301  acgcctcttt ggaggctagg aaacttgacg aaagcgttgc acgatgtcta
     351  tgcacctaga caccaacaag agttctggga atcttctgaa cttgggtgcg
     401  atgtatgcgg ctattacaac aactcatcat gttcttgttt gattgttgat
     451  gggaagttgt gccaagtaca tggccttaag cacggggaga ctcagtcttc
     501  aaaatgcaaa gagtgtaaaa cacacagagg cgactcggca aacgagcaag
     551  agtggttcaa gaacatcatg aacaacaaaa cagaactgct cagtgaacaa
     601  gcctatatcc gcatgtacga ccctagcttt aggaaagggc tagagaggaa
     651  agcgctgaaa gcgatgatag caagtggaga tttctccggg ttcgacggaa
     701  cagtgtcaaa aacagatttg gtattaaatt atatattcta caagaacatc
     751  tatagaagtg aataccacct catgctcaaa acccggtggg aacattggat
     801  gtgggcgtta gtcataaacg accatgggca cgtcatcgtc agcgacggac
     851  agagatcctc aggagatcaa gacacaagtt ttggcaatac aatgatcaat
     901  ggtatttacc attttgccag tacagcactc tccttgggga tatcaattga
     951  agaagcggca actcccattg gggaagtatg gttccgaagt gactttgact
    1001  acacaacacc gaagtacaag aaattgtact tacatagaat cagtcacatc
    1051  tcggacggag atgacaacct gcacttcggg agcaaggaag acatagagaa
    1101  atttgacaaa aacggaccta tgctcctgga acgtgcagga aagaagatca
    1151  gatgcggaac tcgatctgga tacgacctga cggaaagcta ctcagggatc
    1201  agttactgca gtcataatta caaccgatgc agaatcggaa aaatttcaac
    1251  gccagtcgaa atggcggaaa tgtcgggggt ggccgaaatg gtgcccatcg
    1301  actgtgtccc taaaacattc aagaaagtgg acaatgacaa tctcccgttg
    1351  caacatctga gggacaaaaa actaggcctc cgggtcgaat atatgccagc
    1401  cagagctatg agcgaagtaa tcggcaagct ggtaatgaca atgaaaggca
    1451  gcactgccaa catggatttc acaagagact acggctcatc aacgaaagag
    1501  cagaagaggg gccaaaagaa cgaagaggcc attgccataa cacgaggcaa
    1551  actgctcagc tacctactga attattgtca gtattcagtg gtcagaattt
    1601  tagtgatgag tgcgttttcc attattggag acggtgtctg caacttgcag
    1651  gaattaaagc gtcggtacaa cgtgcctagc attgccaaga caattggctc
    1701  tgctttgcgc ggggtattca acatctcgac gct