Sequence of DPV Tobacco etch virus

Tobacco etch virus strain Oxnard polyprotein gene, partial NIa protein, partial cds.

ACC No: AF003824

Dated: 2005-04-15 | Length: 831 | CRC: 1919883742

                !!NA_SEQUENCE 1.0
ID   TEAF3824   standard; genomic RNA; VRL; 831 BP.
XX
AC   AF003824;
XX
SV   AF003824.1
XX
DT   21-JUN-1997 (Rel. 52, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE   Tobacco etch virus strain Oxnard polyprotein gene, partial NIa protein,
DE   partial cds.
XX
KW   .
XX
OS   Tobacco etch virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-831
RX   MEDLINE; 98001385.
RX   PUBMED; 9343220.
RA   Schaad M.C., Lellis A.D., Carrington J.C.;
RT   "VPg of tobacco etch potyvirus is a host genotype-specific determinant for
RT   long-distance movement";
RL   J. Virol. 71(11):8624-8631(1997).
XX
RN   [2]
RP   1-831
RA   Schaad M.C., Lellis A.D., Carrington J.C.;
RT   ;
RL   Submitted (12-MAY-1997) to the EMBL/GenBank/DDBJ databases.
RL   Inst. of Biological Chemistry, Washington State University, 291 Clark Hall,
RL   Pullman, WA 99164-6340, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .831
FT                   /db_xref="taxon:12227"
FT                   /mol_type="genomic RNA"
FT                   /organism="Tobacco etch virus"
FT                   /strain="Oxnard"
FT   CDS             <1. .>831
FT                   /codon_start=1
FT                   /db_xref="GOA:O12388"
FT                   /db_xref="HSSP:1LVM"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="UniProt/TrEMBL:O12388"
FT                   /note="NIa region, complete VPg and partial proteinase."
FT                   /product="polyprotein"
FT                   /protein_id="AAC58509.1"
FT                   /translation="GKKNQKHKLKMRGAREARGQYEVAADPEALEHYFGSAYNNRGRRK
FT                   GTTRGMGAKSRKFIIMYGFDPTDFSYIMFVDPLTRHTIDESTPASMDLVQDEFGKVRTR
FT                   MLIDDEIDSQNLKANTTIHAYLVNSGTKKVLKVDLTPHSSLRASERSTAIMGFPERENE
FT                   LRQTGMAVPVAYDQLPPKNEDLTLEGESLFKGPRDYNPISSAICHLTNESEGHTTSLYG
FT                   IGFGPFIITNKHLFRRNNGTLSVQSLHGVFKVKNTTTLQQHLIDGRDMMLIRMPK"
XX
SQ   Sequence 831 BP; 259 A; 159 C; 211 G; 202 T; 0 other;

 AF003824  Length: 831  April 19, 2005 08:56  Type: N  Check: 9599  ..

       1  gggaagaaga atcagaagca caagcttaag atgagagggg cgcgtgaagc
      51  tagagggcaa tatgaggttg cggcggaccc agaggcgcta gaacattact
     101  ttggaagtgc atataataac agaggaaggc gcaagggcac cacgagagga
     151  atgggtgcaa aatctcggaa attcataatc atgtatgggt ttgatccaac
     201  tgatttttca tacattatgt ttgtggatcc cttgacacgt cacactattg
     251  acgagtccac acccgcatcc atggatttag tgcaggatga gtttgggaag
     301  gttagaacac gcatgttaat tgacgatgag atagattctc aaaatcttaa
     351  agccaacacc acaatccatg cttatttggt gaatagtggc acgaagaaag
     401  ttctgaaggt tgatttgaca ccacattcgt cgctgcgtgc gagtgagaga
     451  tcaacagcaa taatgggatt tcctgaaagg gagaacgaac tgcgtcaaac
     501  cggcatggca gtgccagtgg cttatgatca attgccacca aagaatgagg
     551  acttgacgct tgaaggagaa agcttgttta agggaccacg tgattacaac
     601  ccgatatcga gtgccatttg tcatttgacg aatgaatctg aggggcacac
     651  aacatcgttg tatggtattg gttttggtcc tttcatcata acaaacaagc
     701  acttgtttag aagaaataat ggaacactgt cagtccaatc actacatggt
     751  gtattcaagg tcaagaacac cacaactttg caacagcatc tcattgatgg
     801  gagggacatg atgcttattc gcatgcctaa g