Sequence of DPV Groundnut yellow spot virus
Peanut yellow spot virus nonstructural protein and nucleocapsid protein genes, complete cds.
ACC No: AF013994
Dated: 2006-11-14 | Length: 2970 | CRC: 707640696
ID AF013994; SV 1; linear; genomic RNA; STD; VRL; 2970 BP.
XX
AC AF013994;
XX
DT 07-JAN-1998 (Rel. 54, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 5)
XX
DE Peanut yellow spot virus nonstructural protein and nucleocapsid protein
DE genes, complete cds.
XX
KW .
XX
OS Peanut yellow spot virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-2970
RX DOI; 10.1007/s007050050291.
RX PUBMED; 9541618.
RA Satyanarayana T., Gowda S., Reddy K.L., Mitchell S.E., Dawson W.O.,
RA Reddy D.V.;
RT "Peanut yellow spot virus is a member of a new serogroup of Tospovirus
RT genus based on small (S) RNA sequence and organization";
RL Arch. Virol. 143(2):353-364(1998).
XX
RN [2]
RP 1-2970
RA Satyanarayana T.;
RT ;
RL Submitted (12-JUL-1997) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, CREC, 700 Experiment Station Road, Lake Alfred, FL 33850,
RL USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2970
FT /organism="Peanut yellow spot virus"
FT /chromosome="S"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:63443"
FT repeat_region 1. .22
FT /rpt_type=INVERTED
FT /note="imperfect, terminal repeat"
FT CDS 58. .1500
FT /codon_start=1
FT /product="nonstructural protein"
FT /note="ORF 1"
FT /db_xref="InterPro:IPR004915"
FT /db_xref="UniProtKB/TrEMBL:O55842"
FT /protein_id="AAB94021.1"
FT /translation="MSEMNSEKGKIIIPKEYDPEYCRQALLSHGSQVEKASSLDVYTIY
FT EKNTLAFESIHITNPKFKVSSGYGTSGYVLNKDKVDASAEDLKLHNLETSTDSQDFYDS
FT FNGPSGVDSTISLTGPEIVITISHPKQSAYAYKHNFHGRIAVNGEAKAMISDFKEFVDV
FT YSSNPYNFLYNPKILNIEETSSTILFPVEQIGTLPSTISVFGRYFDKNHFSVVDANKYM
FT SVKAVSDGAKYSNQGSHRQLHNKNLKAIEIASVSGIMPNTISKTTMQTKKNCTVYIQVQ
FT VLDPSCKPEKKECLIQAKDDPYQRLVYCKSECLGQTKPGISTFLFKIICLDCTQSEVSH
FT PTTYFAGALSTCLDLEEMPSLVRPASANLNAMVDTDREKINEIICKNLVAVHLELAQDI
FT SKKLNKPINVFTIKDTSNMTGDTVDVNGKKFRILKDSSGDCYFTSATFEKTFIGAYKSC
FT QTFIDYCDSKKLSINGDNVFIF"
FT CDS complement(1086. .1292)
FT /codon_start=1
FT /product="ORF3"
FT /db_xref="UniProtKB/TrEMBL:O55843"
FT /protein_id="AAB94023.1"
FT /translation="MVKTLIGLFNFLEISCANSRWTATRFLHMISFIFSLSVSTIAFRL
FT ADAGLTREGISSKSRQVERAPAK"
FT CDS complement(2154. .2894)
FT /codon_start=1
FT /product="nucleocapsid protein"
FT /note="ORF 2"
FT /db_xref="GOA:O55844"
FT /db_xref="InterPro:IPR002517"
FT /db_xref="UniProtKB/TrEMBL:O55844"
FT /protein_id="AAB94022.1"
FT /translation="MSTKGVVKVKNDRELFESLSKNAKVELEQEQISFTFKTFFDSKSS
FT KVDLTEANMVLYINSANRLKLIGKENNAKTFLNINIVKSSPGVDEFTWSRLDSVIRMKY
FT IDRIKDYNEDKLKAESAKLNNWLLEIFNLKQMSPKDEVIFKVITGGNLNHLMCFKTTFA
FT HAFAIANYQHKRAEQLGITNFDTKAQLDRMIVIGERNKVLPSTAPLTLINQYFKNAMPK
FT VKAAERDQSSKYEELQAAIGNGEL"
FT repeat_region 2949. .2970
FT /rpt_unit_seq="inverted"
FT /note="imperfect, terminal repeat"
XX
SQ Sequence 2970 BP; 964 A; 556 C; 511 G; 939 T; 0 other;
af013994 Length: 2970 14-NOV-2006 Type: N Check: 2046 ..
1 agagcaatcg gggcataaaa taaaaacaca taaactctat attctctaat
51 ttcaatcatg tcagagatga attcagaaaa aggaaaaatc ataatcccaa
101 aggagtatga cccagaatac tgcagacaag cattgctgtc tcatggcagt
151 caagttgaaa aagcttcttc tctagatgtt tacaccattt atgagaagaa
201 cactttggca tttgaatcca tccacatcac taacccaaag tttaaggttt
251 catcaggcta tggcacttct ggatatgtct tgaacaaaga caaggttgat
301 gcttcagcag aagacttaaa gcttcataac ttggaaacat ccacagacag
351 ccaggacttc tatgattcct tcaatggtcc atcaggtgtg gactcgacca
401 taagtcttac tgggcctgaa attgttatta caatttcaca tccaaagcaa
451 tctgcttatg cttataaaca caatttccat ggtaggattg ctgttaatgg
501 tgaagctaaa gccatgatat cagattttaa agaatttgtt gatgtgtact
551 ccagcaatcc ttacaatttc ttgtataatc caaagatctt gaacattgag
601 gagactagta gcacaatact gtttcctgtg gagcagatcg gaacacttcc
651 ttcaaccatt tcggtgtttg gcaggtactt tgacaaaaac catttctcag
701 ttgttgatgc caacaaatat atgtctgtca aagcagtgtc tgatggtgca
751 aagtactcta atcaaggttc ccacagacaa cttcataaca agaacttgaa
801 agctatagag atagcttcgg tgtctgggat catgccaaac actatttcca
851 aaactacaat gcaaacaaag aagaattgca ctgtttacat ccaggttcaa
901 gtcctcgatc cttcttgcaa gcctgaaaaa aaggaatgct tgatccaagc
951 taaagatgac ccttaccaga gacttgttta ttgcaaatct gaatgcttag
1001 gtcaaactaa gccaggcatt tctacgtttt tgttcaagat catttgtctt
1051 gactgcactc aatcagaggt ttctcaccct acaacctact ttgctggagc
1101 tctttcaact tgcctagatt tggaagaaat gccttctctc gttagacccg
1151 catcagctaa cctgaatgct atggttgaca ctgacagaga gaagataaat
1201 gagatcatat gcaaaaatct ggtggcagtc catcttgaat tggcacaaga
1251 tatttctaag aaattgaaca agcctattaa tgttttcacc atcaaggata
1301 cttctaatat gactggagat acagtggatg taaatggcaa aaagttcaga
1351 attttgaaag actcttcagg ggactgctac tttacatcag ccacgtttga
1401 aaagaccttt atcggagcct ataaatcttg tcaaacattt attgattact
1451 gtgacagtaa gaagcttagc ataaatggtg ataatgtttt catcttttga
1501 atcagacatt ttcgtagggt aggatttcaa attttgaata aattgaaaag
1551 aaaaggaata aatacaaaaa acaaaaaaat caaaaaaatg ataaaaccaa
1601 ataaaaaaat taataaaaac aaaaacaaaa aaagaggact tcggtcccac
1651 acttggcaaa gatataacgg ctatcaagga ctggtctaaa cagtttaaag
1701 aatgtttaaa ttattgatta atcaaataag atgcagtaat ttaaaagaag
1751 acctttctaa tattcgagct tgaatcaaac agtcactcaa ctttgaaatc
1801 atattaaata tttgtgacca gtttctagat tatttggata atttagacca
1851 attttgggga tttctccctc ttttttttag gttttcactt ttttgatttt
1901 tttggttttt gtattttata atgtctttaa cacacataaa tctgatttaa
1951 acagacaagc acactttaac atttgcacaa tagtgctgag gtagcttaca
2001 ggtaacatag tttgacatca ggtaacatag cttagaaatg cataaatata
2051 aacacttctt tatcagaaga taagagaaaa gaagctgaat tataacagat
2101 aaatgcaatt taagtactag taaacctttg gcatcaatag atgtcttgtc
2151 agttcacagc tctccgttac ctatagctgc ctgaagctct tcatatttgg
2201 aagactgatc cctttcggca gccttgactt ttggcatggc atttttgaaa
2251 tactgattga tcaaagtcag tggggcagtt gatggcaaaa ctttattgcg
2301 ttcacctatc actatcattc tatcaagctg agccttagta tcaaagtttg
2351 tgataccaag ctgctcagct cttttgtgct gataatttgc aattgcaaag
2401 gcatgtgcaa aagttgtttt gaagcacatc agatggttca aattgccacc
2451 agttatgact ttgaagataa cctcatcttt tggtgacatc tgtttcaagt
2501 tgaaaatctc caaaagccag ttattcaatt ttgcgctttc agctttcagc
2551 ttgtcctcat tgtaatcctt gattctgtca atatatttca tccttatcac
2601 agaatccaac ctgctccaag taaactcatc tacgcctggt gagcttttca
2651 caatatttat attcaagaat gtcttggcat tgttctcctt accgatgagc
2701 ttcaatctat tggcactatt gatgtaaagc accatattgg cctcagtcaa
2751 atcaacttta gagcttttgc tatcgaagaa agtcttaaaa gtgaaagata
2801 tctgctcttg ctcaagctca accttagcat ttttggaaag agattcaaag
2851 agttctctgt cattctttac ctttacaacg ccttttgtag acatctttgc
2901 tttggtttct gatttgatta gactatgctg tagattttag ttgaattatt
2951 atttttgcct tgattgctct