Sequence of DPV Bamboo mosaic virus
Bamboo mosaic virus strain S complete genome.
ACC No: AF018156
Dated: 1997-09-23 | Length: 6366 | CRC: 818971228
!!NA_SEQUENCE 1.0
ID AF018156 standard; RNA; VRL; 6366 BP.
XX
AC AF018156;
XX
SV AF018156.1
XX
DT 23-SEP-1997 (Rel. 52, Created)
DT 23-SEP-1997 (Rel. 52, Last updated, Version 1)
XX
DE Bamboo mosaic virus strain S complete genome.
XX
KW .
XX
OS Bamboo mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potexvirus.
XX
RN [1]
RP 1-6366
RA Liao J.T., Hsu Y.H.;
RT "Full-length sequence of infectious bamboo mosaic virus genomic RNA";
RL Unpublished.
XX
RN [2]
RP 1-6366
RA Liao J.T., Hsu Y.H.;
RT ;
RL Submitted (11-AUG-1997) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Biotechnology Laboratories, National Chung Hsing University,
RL 250, Kuo-Kuang Rd., Taichung, Taiwan 402, Republic of China
XX
DR SPTREMBL; O37174; O37174.
DR SPTREMBL; O37175; O37175.
DR SPTREMBL; O37176; O37176.
DR SPTREMBL; O37177; O37177.
DR SPTREMBL; O37178; O37178.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6366
FT /db_xref="taxon:35286"
FT /organism="Bamboo mosaic virus"
FT /strain="S"
FT CDS 94. .4191
FT /codon_start=1
FT /db_xref="SPTREMBL:O37174"
FT /gene="ORF1"
FT /product="replicase"
FT /protein_id="AAB70562.1"
FT /translation="MALVSKVFDSITDPSLRAVLQEEAHSQVKQVLKDTALYSRYALLP
FT TAANTLERYAIPHNPFSTKLHTHAAAKALENDLYRTASYLLPKERVSFLFMKPSKMQYF
FT RRRGDVDTFINADIVAKDLARYPLETIYPRLPEITTKMAFIGDSLHYFQPEVLEHIFTS
FT SPQLETLLATIVLPPEATLRLKSLYPEIYTLHYMPRKFLYKPGGLSGGEYEHDYKDLTW
FT LKIGHVTTASMCLTVDRVESKAANHLLLIRRGRLKLSTYRSYDTPEPLVVVPKIFLPPK
FT YNAQKPITKTKANSWILYVKSAGEPKIRDVWAKLRQTIANSELNQYEPAELLLLTNYFY
FT VLGKLDSITSFETLLGDNILKRLFRPAMAKIQELRHWVSGPTAFMQLYKALQLVDVDFT
FT FEVTKNWETKQENHSEPELPKDAIDVLVQSLIGIDYTDAAITEAANPKQQESGPKPYTN
FT LPQPLQQTKCPEDTEMSASPECKAAETAQETHKAGPSSNPALNTDQEAAPSEPTDSKER
FT KCPTLRELPWKAWLKLLRGLGFQGDLEQSDVEGDLIYPIKHIRHLPVEDFSGPITATLR
FT KMNRMPCKYSPDIERAAAFARDVMSNKTGAILPKQSHEWKTTLKRKCKLAPRQTLISVI
FT HGAGGSGKSRALQEYMRNNKEDPIVTILPTNELRADWKAKLPAHDPDMFMTFENALLIP
FT KGNVVIMDDYTKLPRGYIEAYVQNSPMLDLLILTGDPRQSEHFESAEGNTINDLSPSPV
FT VFSAYARYYINATHRNNRDLANALGVYSEKQGKTRISVSNHIEDGRHTLVPSQIKQRNY
FT VSMGRKTSTYAGCQGITASRVQVIIDNDTAKCSHQVLYTAFSRAADEIHFCNTMTDEKQ
FT FWAKVKCTPYLQAILNLTKEHSLPDPQPEPDEPLEPKAPVTHIAVENVVPLVEEIIEPL
FT PEKHDREIYSESTGHSNCIQTENEFIQAFQHQQAKDETLFWATIEKRIVTSTPESNWTE
FT FKTKRPLGDILWLAYKEAMCLPADAIKFDPDLWWKCADEVQNKYLQKPLHMIKNGILRQ
FT NPDFGERHIALFLKSQWVKKNEKIGTVNVKAGQTIAAFYQSTVMIFGTMARYMRRVREK
FT FCPKNILINCEIDQPTASKWVDTHWKFDRLAYTNDFEAYDQSQDGAMLQFEVMKARHHD
FT LPADLIESYIELKLNAKIFLGTLGIMRLTGEGPTFDANTECNIAYTHARFHIPRGTAQL
FT YAGDDCALNCEPEERESFKPLAAQFTLKSKPVTIRQGKGSWPEFCGNIITPYGYLKHPR
FT KTWAALHKAKLQGKNELKKTATAYALDVLPTYELGDAIHDIFTDNELTFHYQTIRTLHT
FT EAHTRVFANHDAIFGEEGLFSS"
FT CDS 4218. .4979
FT /codon_start=1
FT /db_xref="SPTREMBL:O37175"
FT /gene="ORF2"
FT /product="helicase"
FT /protein_id="AAB70563.1"
FT /translation="MDNRITDLLTRSGYSRTSEPRGAGQQLVVHAVAGAGKTTLLREIL
FT NTIPGVTIHTAGTPDPPNLTLNYIKGQEPPCPKKYTILDEYPARAKWPEEARDMLIADN
FT LQHTGPTTRPHYIKLTTYRLGSQTVKTLQSLGYQLEFQHRADQQDQGFSFTGLFDGPIY
FT GQPITLDTAAHNLALAHGLPALQATQTRGLEYDTTTIISSTPLPTVKDKVGLYIAFTRH
FT RKACHIRAPGINPTCDVASSHGPASSSGQTT"
FT CDS 4945. .5304
FT /codon_start=1
FT /db_xref="SPTREMBL:O37176"
FT /gene="ORF3"
FT /product="ORF3"
FT /protein_id="AAB70564.1"
FT /translation="MDQPLHLARPPDNTRAYLVLAIGVASALFLYTLTRNTLPHTGDNI
FT HHLPHGGRYVDGTKGILYNSPTSSYPSSSLPFSMVIALATTLFLITRNVLNPAPTTPRI
FT YAPLCLHCHRNHPPC"
FT CDS 5298. .5456
FT /codon_start=1
FT /db_xref="SPTREMBL:O37177"
FT /gene="ORF4"
FT /product="ORF4"
FT /protein_id="AAB70565.1"
FT /translation="MLNTDTLCIILSILILGILYNILQQHLPPPCEIIINGHTISIRGN
FT CYHTTSS"
FT CDS 5498. .6226
FT /codon_start=1
FT /db_xref="SPTREMBL:O37178"
FT /gene="ORF5"
FT /product="coat protein"
FT /protein_id="AAB70566.1"
FT /translation="MSGAGTGTGRGTGTGVGGTGGTGGTGGGGTGRGQQAAAQPWEAIF
FT TKDDLAAIEPKPASANVPNTKQWIGIQAGLIKAGATDANFMKVLLGLSLEAFDRGSSEA
FT TTWDGITEGVEHRAAANAIKEANCPIHKVTYYLAKPTFAIRQSKNLPPANFAKKNVPSQ
FT YKWCAFDAFDGLYDPTCLASELPYDAPSEIDRMAYATFKTIQIKIANDQKGFNLNYNPN
FT VTQARLPNAPLPALPEPTSD"
XX
SQ Sequence 6366 BP; 1921 A; 1890 C; 1333 G; 1222 T; 0 other;
AF018156 Length: 6366 December 21, 2001 14:44 Type: N Check: 3337 ..
1 gaaaaccact ccaaacgaaa cgaaaagaaa ttaaaagacg aagaagacaa
51 actgccaatt gtcccctaca atcgccctgc gcgtgcggca acaatggcac
101 tcgtttctaa agtctttgac agcatcaccg acccatcctt gagggctgta
151 ctccaagagg aagcgcactc ccaagttaaa caagtgctca aagacacagc
201 gctctactcc agatacgccc tcctccccac tgctgcaaac acgcttgaac
251 ggtacgcaat ccctcataac ccgttcagca caaaattaca cacacacgca
301 gcagcaaaag cccttgagaa tgacctctac cggacggcct catatctcct
351 cccaaaagaa agagtgtcat ttctctttat gaagccatct aaaatgcaat
401 atttccggag aagaggagat gtcgacacct tcatcaacgc tgacatcgtt
451 gctaaagacc ttgccaggta ccctctcgag actatctacc cccgcctccc
501 ggaaatcaca acaaaaatgg cttttattgg ggacagcctg cattacttcc
551 agcctgaggt gctggagcac attttcacaa gctccccaca actggagacc
601 ctgctcgcca cgatcgtcct tccccccgaa gccacactca ggcttaaaag
651 tctataccca gaaatctaca cgttgcacta catgccccga aaatttctct
701 acaaacctgg gggcctatca ggcggggaat acgaacatga ttacaaggac
751 ctaacttggc tcaagattgg gcatgtcaca actgcttcca tgtgcctcac
801 agtcgaccgg gtggagtcta aagcggccaa ccacttacta ctcatacggc
851 gtggaaggct caaactcagc acttacagat cttacgacac ccctgagccc
901 ttagtcgtgg tgccaaaaat attcctcccc ccaaagtata atgcacaaaa
951 acccattact aagacgaaag caaactcgtg gatcctctac gttaaatcag
1001 ctggggagcc gaagattagg gatgtttggg ccaagctcag gcagacaata
1051 gcgaactctg aactcaacca atacgagcct gcggaattgc tgctattaac
1101 caactacttc tacgtgttgg gcaagttgga ctccatcacg tccttcgaaa
1151 ctcttctcgg ggacaatata ctcaagcgcc ttttcagacc ggcgatggca
1201 aaaatccaag aactcagaca ctgggttagt ggcccaacag ccttcatgca
1251 actctacaaa gcactgcaac tcgtcgatgt agacttcact tttgaggtca
1301 ccaagaactg ggaaacaaaa caggagaacc acagcgaacc cgaactccca
1351 aaagatgcca ttgacgtgct cgtccagtca ctcatcggca tcgattacac
1401 agacgcagca attaccgaag ccgcaaaccc taaacaacaa gaaagtggac
1451 caaaacccta caccaacctc ccgcagcccc ttcagcaaac caaatgcccc
1501 gaggacacgg aaatgtccgc atcaccagaa tgcaaagcgg ctgaaactgc
1551 gcaagagacc cacaaagcag ggcccagttc aaaccccgct ctcaacactg
1601 atcaagaggc agccccgtca gaacccacag acagcaaaga gcggaagtgc
1651 cccacgttgc gtgaactgcc atggaaggcg tggctcaaac tacttcgggg
1701 ccttggcttc caaggcgacc ttgaacagtc ggacgtggag ggggacctca
1751 tttacccaat taaacacatc cggcacttac cagttgagga tttcagtggc
1801 ccgatcacag cgaccctgag gaaaatgaac cggatgccat gcaaatactc
1851 ccccgacatt gaaagagcag ccgcattcgc gcgagacgtg atgagcaata
1901 aaacaggggc catcctcccc aaacaatccc atgaatggaa gaccacactt
1951 aaaagaaaat gcaaacttgc ccctcgacaa actcttattt ccgtgataca
2001 tggcgcgggc ggcagtggta aatcaagagc cctgcaagaa tacatgagga
2051 acaacaagga ggaccccatt gtcaccatcc ttccgacgaa tgaactaagg
2101 gccgattgga aagctaaact gcccgctcat gaccctgaca tgttcatgac
2151 attcgagaac gcactgctga tcccaaaagg caacgtggtc atcatggacg
2201 attacactaa gctaccacgc gggtacatcg aggcgtacgt gcaaaactcc
2251 ccaatgctag acctgctcat actcacagga gaccccaggc aatccgaaca
2301 cttcgaatca gccgaaggga acacgatcaa cgatctcagc ccctctccag
2351 tcgtcttcag cgcgtacgcc cgctattaca tcaacgcaac tcacaggaac
2401 aaccgggacc tagcgaacgc cttgggggtt tactctgaaa aacaagggaa
2451 aacgcgaata tcagtcagta accatataga agacgggcgc cacacattag
2501 ttcctagcca aatcaaacaa agaaactacg tctctatggg caggaaaact
2551 tctacctatg cgggctgtca agggataacc gcttcacgtg tacaggtcat
2601 cattgacaac gacactgcaa agtgctcaca tcaggtccta tacacagcct
2651 tttccagggc cgcagacgaa atacacttct gcaacactat gaccgacgaa
2701 aaacaatttt gggcaaaagt gaagtgtacc ccgtacttac aagccatcct
2751 caaccttaca aaggaacact ctctgcctga cccgcagcct gagccagatg
2801 aacccttgga gcccaaagcc cctgtcaccc acattgccgt ggaaaacgtg
2851 gtaccgctag tggaagaaat cattgagcct cttccagaga agcatgaccg
2901 agagatctac tcagaaagca ccggacactc caactgcatc caaaccgaaa
2951 acgagttcat tcaggctttc caacaccaac aggcaaagga tgaaactctc
3001 ttctgggcca ccattgagaa acgcatagtc acctcaaccc ctgaatcaaa
3051 ctggactgaa tttaaaacaa agaggcccct aggtgacatc ttgtggctgg
3101 cctacaagga ggctatgtgc ttgccagcgg acgccatcaa attcgaccca
3151 gacctttggt ggaaatgtgc cgatgaggtg caaaataaat acctacaaaa
3201 accccttcac atgatcaaaa acggaatact cagacaaaac ccagactttg
3251 gggagcgtca catcgcgcta tttctaaagt ctcagtgggt aaagaaaaac
3301 gaaaaaattg ggacagtcaa cgttaaggct ggtcaaacta tcgcagcgtt
3351 ctaccagagt accgtcatga tcttcggcac gatggcgcgc tacatgaggc
3401 gtgtaagaga aaaattctgc ccaaagaaca tactaattaa ctgcgaaatt
3451 gaccagccca cagcttcaaa atgggtggac acgcattgga aattcgacag
3501 gttggcatac acaaacgact ttgaggcgta tgaccagtct caagatgggg
3551 ccatgttgca atttgaggtg atgaaagcaa ggcaccatga tctgcctgct
3601 gatttgatcg agtcctacat cgaacttaag ctgaacgcca aaatattcct
3651 aggcaccctt ggcatcatga gactcactgg agaggggcca accttcgatg
3701 ccaatactga atgcaacatc gcctacacgc atgcccgatt ccacataccc
3751 agaggcaccg cacaactgta cgctggagac gattgcgccc tcaactgcga
3801 acctgaagag agagaatcat ttaaaccttt agctgcgcag ttcaccctca
3851 aatcaaagcc ggtgaccata agacaaggaa aaggctcctg gcccgagttc
3901 tgtggcaata tcatcacccc ttacggctac ctcaaacatc ctcggaaaac
3951 atgggctgca ctgcacaagg ccaaacttca agggaaaaat gaattgaaga
4001 aaaccgccac ggcctatgcg ctcgacgtgc taccaacgta cgaactaggg
4051 gacgcaatac acgatatatt taccgacaac gagctgacat tccactacca
4101 aacaatcaga accctacata cagaagccca cactcgagtc ttcgccaacc
4151 acgatgcaat ctttggcgaa gaaggtttat tctctagtta agtaacctat
4201 tagtttaaca actaaccatg gataaccgga taactgacct actcacaaga
4251 tctggctact caagaacatc agaaccaaga ggcgccgggc agcaactggt
4301 cgtgcacgcg gtggctggtg ctggcaagac aacgctactc cgcgagatac
4351 taaataccat tccaggagtc accatacaca ctgcaggcac ccccgaccca
4401 ccaaacctca cactcaacta catcaaaggc caagagcccc cttgcccgaa
4451 gaagtacact atcttagatg agtacccagc tagagccaag tggccggagg
4501 aggcccggga catgttgatt gctgacaacc tccaacacac aggccccacg
4551 acccgccccc actatataaa actcaccacc tacagacttg gttcccaaac
4601 agtcaaaacg ttgcaaagcc ttgggtacca actggaattc caacaccggg
4651 ctgaccagca agaccagggc ttctcattca ccggactatt cgacggccca
4701 atttacggac aaccgatcac actcgacaca gcggcccaca acctggcact
4751 agctcatgga ctaccagctc tacaagcaac tcaaacgaga gggctagaat
4801 acgacaccac taccatcatc tctagcactc ctctgccaac agttaaggac
4851 aaggtgggcc tatacattgc ttttaccagg caccgaaaag cctgccatat
4901 tcgagcacct gggatcaacc ccacatgtga cgtggcctcc tctcatggac
4951 cagcctcttc atctggccag accacctgac aacacgagag cttacctagt
5001 attagctata ggagtagcga gtgcattgtt cctctataca ctaacccgta
5051 atacccttcc acacaccggc gacaacatcc accatttacc gcacgggggt
5101 aggtacgtgg acggcaccaa aggaattctc tacaacagcc ccacctcctc
5151 atacccatcc tcatctctcc cattctccat ggtcatcgca ctagccacaa
5201 cccttttcct catcaccaga aacgttctca acccagcccc caccacacct
5251 agaatctatg cgcccctctg cttgcattgc caccggaatc acccaccatg
5301 ctaaacactg acacactatg catcattctg tccatactaa tattaggcat
5351 cctatataat atacttcaac agcatctgcc cccaccatgt gaaataataa
5401 taaacgggca cactatatcc attaggggca actgctacca caccacctcc
5451 agctagggtt tgttaagttt ccttcttttg taaattaaac actaaagatg
5501 tctggagctg gaacgggaac tgggcgaggg accgggaccg gagtaggagg
5551 cactgggggc acaggtggca caggcggcgg aggaacaggt agagggcaac
5601 aagctgcagc ccagccctgg gaggcaattt ttactaagga cgacctggcc
5651 gcaatcgagc caaaacctgc ttcggcaaat gttccaaaca ctaagcagtg
5701 gatcggcatt caagctggac tcatcaaggc cggagccacg gacgcaaact
5751 tcatgaaagt actgctcggc ctcagtctcg aagctttcga caggggctca
5801 tcagaagcca ccacttggga tggaattact gagggcgtgg agcaccgtgc
5851 agcagccaac gccatcaagg aggcgaactg cccaatacac aaggtcacct
5901 actacctagc caaaccgacg ttcgccatta gacaatcgaa aaacctcccc
5951 ccagcgaact tcgcaaagaa gaatgtgcca tcacaatata aatggtgtgc
6001 gttcgatgcc tttgatggcc tgtacgatcc tacctgcctt gcctcagaac
6051 taccctacga cgccccctca gaaatagacc gaatggcgta cgctaccttc
6101 aaaactatac agatcaagat cgccaatgac cagaaagggt tcaacctcaa
6151 ctacaaccct aacgtcaccc aggctcgact ccccaacgcg cccctaccag
6201 ctcttcccga accaacatca gactaaacgt tgcatgatcg taaaacatgc
6251 ccggcttacc gtgagccgcc tttgaaagaa aggtttacac ggactctgtt
6301 gcgttacgca cgtacctaac ccgtgccagc agaataaaga ccttttggtt
6351 tctacagttt tttcca