Sequence of DPV Ryegrass mosaic virus

Ryegrass mosaic virus strain RGMV-AV polyprotein gene, partial cds.

ACC No: AF035637

Dated: 2003-06-28 | Length: 1794 | CRC: 1658505746

                !!NA_SEQUENCE 1.0
ID   AF035637   standard; RNA; VRL; 1794 BP.
XX
AC   AF035637;
XX
SV   AF035637.1
XX
DT   02-JUL-1998 (Rel. 56, Created)
DT   28-JUN-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Ryegrass mosaic virus strain RGMV-AV polyprotein gene, partial cds.
XX
KW   .
XX
OS   Ryegrass mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Rymovirus.
XX
RN   [1]
RP   1-1794
RX   MEDLINE; 99399241.
RX   PUBMED; 10470255.
RA   Mackenzie A.M., Webster D.E., Gibbs M.J., Thomas B.J., Gibbs A.J.;
RT   "Australian isolates of ryegrass mosaic rymovirus and their relationships";
RL   Arch. Virol. 144(2):309-316(1999).
XX
RN   [2]
RP   1-1794
RA   Gibbs A.J., Mackenzie A.M., Keese P.;
RT   ;
RL   Submitted (25-NOV-1997) to the EMBL/GenBank/DDBJ databases.
RL   Research School of Biological Sciences, Australian National University,
RL   Biology Place, Acton, Canberra, ACT 2601, Australia
XX
DR   GOA; Q9WJP2.
DR   SPTREMBL; Q9WJP2; Q9WJP2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1794
FT                   /db_xref="taxon:40666"
FT                   /mol_type="genomic RNA"
FT                   /organism="Ryegrass mosaic virus"
FT                   /strain="RGMV-AV (Australia-Victoria)"
FT   CDS             <1. .1623
FT                   /codon_start=1
FT                   /db_xref="GOA:Q9WJP2"
FT                   /db_xref="SPTREMBL:Q9WJP2"
FT                   /product="polyprotein"
FT                   /protein_id="AAC25022.1"
FT                   /translation="GNNSGQPSTVVDNTIMVIIAMQYAISKAEFPAGRLRDQIRYFANG
FT                   DDLVVAVEPSLSDKISSFSASFAELGLSYDFSNKVNDRSELQFMSHTGKLIDGIYIPKL
FT                   ERERICAILEWSRSDEPQFQLDAISAAMIEAWGDDELLYQIRRYYSWLLEQEPYKSIAE
FT                   LGHAPYLAEAALKALYTGKDPDAELIAIYERAMLNTPPTEDRPTKVVHEANVTAASSAA
FT                   TQTSTTSPTVTSTSGASTSTSSGTTSAPLASTTPPASATTTPSAGTTAPTTPAVRAANL
FT                   RTSQDTERQRRMRESQLNVRGENDDEDVPAASEFALPRLPTLGAKIRVPKFKGAIVLNK
FT                   DHLIKYTPDQRDLSNTRATQEQFEKWYSGVRNEVEKTDEEMALLLNGFMVWCMENGTSP
FT                   DLSGSWTMMEGEEQICYPLEPFCRHAQPTLRSIMAHFSDAATAYVVLRNQKSRYMPRYG
FT                   LKRGLNDYSLAPYAFDFYEITSTSPLRAREAHAQMKAAAIRGKASRMFGLDGNVSAQSE
FT                   NTERHTVEDVNTRVHSLSGANML"
FT   mat_peptide     <1. .672
FT                   /product="NIb polymerase"
FT   mat_peptide     673. .1620
FT                   /product="virion protein"
FT   3'UTR           1624. .1794
XX
SQ   Sequence 1794 BP; 534 A; 426 C; 444 G; 390 T; 0 other;

  AF035637  Length: 1794  July 8, 2003 08:45  Type: N  Check: 2678  ..

       1  gggaacaaca gtgggcagcc atccaccgtc gtcgataaca caattatggt
      51  cataatagca atgcaatatg caatcagcaa ggccgaattt ccagctggac
     101  ggttgagaga tcaaattcga tattttgcta atggtgacga ccttgtggtt
     151  gcagtcgaac caagtttgag cgataaaatt tcatcattca gcgcgagttt
     201  tgccgaactt ggcctgagtt atgatttttc aaataaagtg aatgaccgat
     251  ctgagctaca gttcatgtcc catactggaa agctgattga tgggatatac
     301  ataccaaagt tggaaagaga acgcatctgt gccatattgg aatggagtcg
     351  cagcgacgaa ccacaatttc aactggacgc aataagcgct gctatgatag
     401  aggcatgggg tgacgacgag ctcttatacc agattagacg atattatagt
     451  tggctcctgg agcaagaacc atacaagagc atagctgaac tggggcacgc
     501  accatacctg gctgaagccg ccttgaaggc gctatacacc ggtaaggacc
     551  cagatgcaga attgattgcc atctacgagc gggctatgct aaacacgcca
     601  ccaacggaag accgaccgac aaaagtggta cacgaagcta acgttactgc
     651  cgcatcttca gcagcaactc agacttccac gacatcaccg acagtcacat
     701  ctactagtgg tgcatcaact tcgacatcga gcggaaccac gtctgcgcca
     751  ctagcaagca caactccacc agcatcagca acaacgacac catcggcagg
     801  aaccactgcg ccaacaacac cagccgtgag agccgcaaac ctgcggacat
     851  cgcaggacac agaaaggcaa aggcgaatgc gggaaagcca actcaatgtg
     901  agaggtgaga atgacgacga agacgtgcca gcagcatcgg aatttgcact
     951  accgcggcta ccaacattag gtgcaaaaat tcgggtgccc aaatttaaag
    1001  gagctatagt acttaacaaa gatcatctga ttaaatacac acccgaccag
    1051  cgtgatttgt ctaacacacg cgcgacacaa gagcaattcg agaaatggta
    1101  ctcaggtgtg agaaatgaag ttgagaaaac ggatgaagaa atggcactat
    1151  tactgaatgg cttcatggtt tggtgcatgg aaaatggcac atcaccagat
    1201  ttatctggat cttggaccat gatggaaggt gaagagcaga tatgctatcc
    1251  acttgaacca ttctgtcgcc acgcacagcc aacgttgcgg tcaataatgg
    1301  cacattttag tgatgccgca acagcatatg tagtcctacg caatcagaag
    1351  tccagatata tgccacggta tggacttaaa agaggtttga atgactactc
    1401  actggcaccg tacgctttcg acttctatga aataacttcc acatcgcctc
    1451  ttcgggctag agaggcgcat gcgcagatga aagccgcagc catcaggggc
    1501  aaggcatcta ggatgtttgg tcttgacggc aatgtatcag cccaatcgga
    1551  gaacacagag aggcatacag ttgaggatgt taacacccga gttcactcac
    1601  tctcgggtgc gaatatgctg taactgtctg cccacttact tgcttggtaa
    1651  acctgtgtta cccttgaacc tatatctgta ttgtgtggct tagccacgtg
    1701  ttactttatg gagtgccagc attcatctag ctcgggtcct gtgagtggtc
    1751  taaccacgtg ggcgcggtct gggtgcggtg cagggaaaaa aaga