Sequence of DPV Ryegrass mosaic virus

Ryegrass mosaic virus strain RGMV-5 polyprotein gene, partial cds.

ACC No: AF035639

Dated: 2003-06-28 | Length: 1794 | CRC: 1232754057

                !!NA_SEQUENCE 1.0
ID   AF035639   standard; RNA; VRL; 1794 BP.
XX
AC   AF035639;
XX
SV   AF035639.1
XX
DT   02-JUL-1998 (Rel. 56, Created)
DT   28-JUN-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Ryegrass mosaic virus strain RGMV-5 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Ryegrass mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Rymovirus.
XX
RN   [1]
RP   1-1794
RX   MEDLINE; 99399241.
RX   PUBMED; 10470255.
RA   Mackenzie A.M., Webster D.E., Gibbs M.J., Thomas B.J., Gibbs A.J.;
RT   "Australian isolates of ryegrass mosaic rymovirus and their relationships";
RL   Arch. Virol. 144(2):309-316(1999).
XX
RN   [2]
RP   1-1794
RA   Gibbs A.J., Mackenzie A.M., Keese P.;
RT   ;
RL   Submitted (25-NOV-1997) to the EMBL/GenBank/DDBJ databases.
RL   Research School of Biological Sciences, Australian National University,
RL   Biology Place, Acton, Canberra, ACT 2601, Australia
XX
DR   GOA; O89522.
DR   SPTREMBL; O89522; O89522.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1794
FT                   /db_xref="taxon:40666"
FT                   /mol_type="genomic RNA"
FT                   /organism="Ryegrass mosaic virus"
FT                   /strain="RGMV-5 (Australia-ACT)"
FT   CDS             <1. .1623
FT                   /codon_start=1
FT                   /db_xref="GOA:O89522"
FT                   /db_xref="SPTREMBL:O89522"
FT                   /product="polyprotein"
FT                   /protein_id="AAC25024.1"
FT                   /translation="GNNSGQPSTVVDNTIMVIIAMQYAISKAGFPAGRLRDQIRYFANG
FT                   DDLVVAVEPSLSDKISSFSASFAELGLSYDFSNKVNDRSELQFMSHTGKLIDGMYIPML
FT                   ERERICAILEWSRSDEPQFQLDAISAAMIEAWGDDELLYQIRRYYSWLLEQEPYKSIAE
FT                   LGHAPYLAEAALKALYTGKDPDAELIAIYERAMLNTPPTEDRPTKVVHEANVTAASSAA
FT                   TQTSTTSPTVTSTSGASTSTSSGTTSAPLASTTPPVSATTTPSAGTTAPTTPTVRAANL
FT                   RTSQDTESQRRMRESQLNVRGENDDEDVPAASEFALPRLPTLGAKIRVPKFKGAIVLNK
FT                   DHLIKYTPDQRDLSNTRATQEQFEKWYSGVRNEVEKTDEEMALLLNGFMVWCMENGTSP
FT                   DLSGSWTMMEGEEQISYPLEPFCRHAQPTLRSIMAHFSDAATAYVVLRNQKSRYMPRYG
FT                   LKRGLNDYSLAPYAFDFYEITSTSPLRAREAHAQMKAAAIRGKASRMFGLDGNVSAHSE
FT                   NTERHTVEDVITRVHSLSGANML"
FT   mat_peptide     <1. .672
FT                   /product="NIb polymerase"
FT   mat_peptide     673. .1620
FT                   /product="virion protein"
XX
SQ   Sequence 1794 BP; 521 A; 420 C; 452 G; 401 T; 0 other;

  AF035639  Length: 1794  July 8, 2003 08:45  Type: N  Check: 8925  ..

       1  gggaacaaca gtgggcagcc atccaccgtc gtcgataaca caattatggt
      51  cataatagca atgcaatatg caatcagcaa ggccggattt ccagctggac
     101  ggttgaggga tcaaattcga tattttgcta atggtgatga ccttgtggtt
     151  gcagtcgaac caagtttgag cgataaaatt tcatcattta gcgcgagttt
     201  tgccgagctt ggcctgagtt atgatttttc aaataaagtg aacgatcgat
     251  ccgagctaca atttatgtcc catactggaa agctgattga tgggatgtac
     301  ataccaatgt tggaaaggga acgcatctgt gctatattgg aatggagtcg
     351  cagcgatgaa ccacaatttc aactggacgc aataagcgct gctatgatag
     401  aggcatgggg tgacgacgag ctcttatacc agattagacg atattatagt
     451  tggctcctgg agcaagaacc atacaagagc atagctgaac tggggcacgc
     501  accatacctg gctgaagccg ccttgaaggc gctatacacc ggtaaggacc
     551  cagatgcaga attgattgcc atctacgagc gggctatgct aaacacgcca
     601  ccaacggaag atcgaccgac aaaagtggtg cacgaagcta acgtcaccgc
     651  cgcatcttca gcagcaactc agacttctac gacatcaccg acagttacgt
     701  ccactagtgg tgcgtcaact tcgacatcga gcggaactac gtctgcgcca
     751  ctagcaagca caactccacc agtatcagca acaacgacac catcagcagg
     801  aaccactgcg ccaacaacac caaccgtgag agccgcaaac ttgcggacct
     851  cgcaggacac agaaagccaa aggcgaatgc gggagagcca actcaatgtg
     901  agaggtgaga atgacgatga agacgtgcca gcagcatcgg aatttgcact
     951  accgcggcta ccaacattag gtgcgaaaat tcgggtaccc aaatttaaag
    1001  gggctatagt actcaacaaa gatcatctga ttaaatacac acctgaccag
    1051  cgtgatttgt ctaacacacg cgcgacacaa gagcaatttg agaaatggta
    1101  ctcaggtgtg aggaatgaag ttgagaagac ggatgaagaa atggcactat
    1151  tattgaatgg cttcatggtt tggtgcatgg aaaatggcac atcaccagat
    1201  ttatccgggt cttggactat gatggaaggt gaagagcaga tatcgtatcc
    1251  actcgaacca ttctgtcgcc acgcacaacc aacgttgcgg tcaataatgg
    1301  cacattttag tgatgccgca acagcatatg tagtcctacg caatcagaag
    1351  tccagataca tgccacggta tggacttaaa agaggtttga acgactattc
    1401  actggcaccg tacgctttcg acttctatga aataacttcc acatcgcctc
    1451  ttcgggctag agaggcgcat gcgcagatga aagccgcagc catcaggggc
    1501  aaggcatcta ggatgtttgg tcttgacggc aatgtatcag cccattcgga
    1551  gaacacagag aggcatacag ttgaggatgt tatcacccga gttcactcac
    1601  tctcgggtgc gaatatgctg taactgtctg cccacttact tgcttggtaa
    1651  acctgtgtta cccttgaacc tatatctgta ttgtgtggct tagccacgtg
    1701  ttactttatg gagtgccagc attcatctag ctcgggtcct gtgagtggtc
    1751  taaccacgtg ggcgcggtct gggtgcggtg cagggaaaaa aaga