Sequence of DPV Ryegrass mosaic virus

Ryegrass mosaic virus strain RGMV-B polyprotein gene, partial cds.

ACC No: AF035640

Dated: 2003-06-28 | Length: 1794 | CRC: -710339123

                !!NA_SEQUENCE 1.0
ID   AF035640   standard; RNA; VRL; 1794 BP.
XX
AC   AF035640;
XX
SV   AF035640.1
XX
DT   02-JUL-1998 (Rel. 56, Created)
DT   28-JUN-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Ryegrass mosaic virus strain RGMV-B polyprotein gene, partial cds.
XX
KW   .
XX
OS   Ryegrass mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Rymovirus.
XX
RN   [1]
RP   1-1794
RX   MEDLINE; 99399241.
RX   PUBMED; 10470255.
RA   Mackenzie A.M., Webster D.E., Gibbs M.J., Thomas B.J., Gibbs A.J.;
RT   "Australian isolates of ryegrass mosaic rymovirus and their relationships";
RL   Arch. Virol. 144(2):309-316(1999).
XX
RN   [2]
RP   1-1794
RA   Gibbs A.J., Mackenzie A.M., Keese P.;
RT   ;
RL   Submitted (25-NOV-1997) to the EMBL/GenBank/DDBJ databases.
RL   Research School of Biological Sciences, Australian National University,
RL   Biology Place, Acton, Canberra, ACT 2601, Australia
XX
DR   GOA; O89523.
DR   SPTREMBL; O89523; O89523.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1794
FT                   /db_xref="taxon:40666"
FT                   /mol_type="genomic RNA"
FT                   /organism="Ryegrass mosaic virus"
FT                   /strain="RGMV-B (Wales, U.K.)"
FT   CDS             <1. .1623
FT                   /codon_start=1
FT                   /db_xref="GOA:O89523"
FT                   /db_xref="SPTREMBL:O89523"
FT                   /product="polyprotein"
FT                   /protein_id="AAC25025.1"
FT                   /translation="GNNSGQPSTVVDNTIMVIIAMQYAISKAEFPAGRLRDQIRYFANG
FT                   DDLVVAVEPSLSDRISSFSASFAELGLSYDFSNKVKDRSELQFMSHTGKLIDGIYIPML
FT                   ERERICAILEWSRSDEPQFQLDAISAAMIEAWGDDELLYQIRRYYSWLLEQEPYKSIAE
FT                   LGHAPYLAEAALKALYTGKDPDAELIAIYERAMLNTPPTEDRPTKVVHEANVTAASSAA
FT                   TQTSTTSPTVTSTSGASTSTSSGTTSAPLASTTPPASVTPIPSVGTTTPTTPTVRAANL
FT                   RTSQDTERQRRMRESQLNVRGENDDEDVPAASEFALPRLPTLGAKIRVPKFTGAIVLNK
FT                   DHLIKYTPDQRDLSNTRATQEQFEKWYSGVRNEVEKTDDEMALLLNGFMVWCMENGTSP
FT                   DLSGSWTMMEGEEQISYPLEPFCHHAQPTLRSIMAHFSDAATAYVVLRNQKSRYMPRYG
FT                   LKRGLNDYSLAPYAIDFYEITSTSPLRAREAHAQMKAAAIRGKASRMFGLDGNVSAQSE
FT                   NTERHTVEDVNTRVHSLSGANML"
FT   mat_peptide     <1. .672
FT                   /product="NIb polymerase"
FT   mat_peptide     673. .1620
FT                   /product="virion protein"
XX
SQ   Sequence 1794 BP; 525 A; 415 C; 448 G; 406 T; 0 other;

  AF035640  Length: 1794  July 8, 2003 08:45  Type: N  Check: 9456  ..

       1  gggaacaaca gtgggcagcc atccaccgtc gttgacaaca caattatggt
      51  cataatagca atgcaatatg caatcagtaa ggctgagttt ccagctggac
     101  ggttgaggga tcaaattcga tattttgcta atggtgatga ccttgtggtt
     151  gcagtcgagc caagtttgag cgataggatt tcatcattca gcgcgagttt
     201  tgccgaactt ggcctgagct atgatttttc gaataaagtg aaagatcgat
     251  ctgagctaca attcatgtcc catactggta agctgattga tgggatatac
     301  ataccaatgc tggaaagaga acgcatctgt gccatattgg aatggagtcg
     351  cagcgatgaa ccacaatttc aactggacgc aataagcgct gccatgatag
     401  aggcatgggg cgacgatgag ctcttatacc agattagacg atattatagt
     451  tggcttctgg agcaagaacc atacaagagc atagctgaac tggggcacgc
     501  accataccta gctgaagccg ccttgaaggc gctgtacact ggtaaggacc
     551  cagatgcaga attgattgcc atctatgagc gggctatgtt gaacacacca
     601  ccaacggaag atcgaccgac aaaagtggtg cacgaagcta acgtcaccgc
     651  cgcatcttca gcagcaactc agacttctac gacatcacca acagtcacat
     701  ctactagtgg tgcgtcaact tcgacatcga gcggaacaac atctgcgcca
     751  ctagcaagca caactccacc agcatctgta acaccgatac catcagtagg
     801  aaccactacg ccaacaacac caactgtgag agccgcgaac ctgcgaacat
     851  cacaggacac agagaggcaa aggcgaatgc gagagagcca actcaatgtg
     901  agaggtgaga atgacgatga agacgtgcca gcagcatcag agtttgcact
     951  accgcggctg ccaacattag gtgcaaagat tcgggtgccc aaatttacag
    1001  gtgctatagt actcaacaaa gatcatctga ttaaatacac acctgatcag
    1051  cgtgatttat ccaacacacg cgcgacacaa gaacaatttg agaagtggta
    1101  ctcaggtgtg agaaatgaag ttgagaagac ggatgatgaa atggcactat
    1151  tactgaatgg cttcatggtt tggtgcatgg aaaatggcac atccccagat
    1201  ttatccgggt cttggactat gatggaaggt gaagaacaga tatcgtatcc
    1251  actcgaacca ttctgtcacc acgcacagcc aacgttgcgg tcaataatgg
    1301  cacattttag tgatgccgca acagcatatg tagtcctacg caatcagaag
    1351  tccagatata tgccacggta tggacttaaa aggggtttga atgactattc
    1401  actggcaccg tacgctatcg acttctatga aataacttcc acatcgcctc
    1451  ttcgggctag agaggcgcat gcgcagatga aagccgcagc catcaggggc
    1501  aaggcatcta ggatgtttgg tcttgacggc aatgtatcag cccaatcgga
    1551  gaacacagag aggcatacag ttgaggatgt taacacccga gttcactcac
    1601  tctcgggtgc gaatatgctg taactgtctg tccacttact cgcttggtaa
    1651  acctgtgtta cccttgaacc tatatctgta ttgtgtggct tagccacgtg
    1701  ttactttatg gagtgccagc attcatttag ctcgggtcct gtgagtggtc
    1751  taaccacgtg ggcgcggtct gggtgcggtg cagggaaaaa aaga