Sequence of DPV Ryegrass mosaic virus

Ryegrass mosaic virus strain RGMV-C polyprotein gene, partial cds.

ACC No: AF035641

Dated: 2003-06-28 | Length: 1794 | CRC: -464470764

                !!NA_SEQUENCE 1.0
ID   AF035641   standard; RNA; VRL; 1794 BP.
XX
AC   AF035641;
XX
SV   AF035641.1
XX
DT   02-JUL-1998 (Rel. 56, Created)
DT   28-JUN-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Ryegrass mosaic virus strain RGMV-C polyprotein gene, partial cds.
XX
KW   .
XX
OS   Ryegrass mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Rymovirus.
XX
RN   [1]
RP   1-1794
RX   MEDLINE; 99399241.
RX   PUBMED; 10470255.
RA   Mackenzie A.M., Webster D.E., Gibbs M.J., Thomas B.J., Gibbs A.J.;
RT   "Australian isolates of ryegrass mosaic rymovirus and their relationships";
RL   Arch. Virol. 144(2):309-316(1999).
XX
RN   [2]
RP   1-1794
RA   Gibbs A.J., Mackenzie A.M., Keese P.;
RT   ;
RL   Submitted (25-NOV-1997) to the EMBL/GenBank/DDBJ databases.
RL   Research School of Biological Sciences, Australian National University,
RL   Biology Place, Acton, Canberra, ACT 2601, Australia
XX
DR   GOA; O89524.
DR   SPTREMBL; O89524; O89524.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1794
FT                   /db_xref="taxon:40666"
FT                   /mol_type="genomic RNA"
FT                   /organism="Ryegrass mosaic virus"
FT                   /strain="RGMV-C (Wales, U.K.)"
FT   CDS             <1. .1623
FT                   /codon_start=1
FT                   /db_xref="GOA:O89524"
FT                   /db_xref="SPTREMBL:O89524"
FT                   /product="polyprotein"
FT                   /protein_id="AAC25026.1"
FT                   /translation="GNNSGQPSTVVDNTIMVIIAMQYAISKAEFPAGRLRDQIRYFANG
FT                   DDLVVAVDPSLSDRISSFGASFAELGLSYDFSNKVNDRSELQFMSHTGKLIDGIYIPML
FT                   ERERICAILEWSRSDEPQFQLDAISAAMIEAWGDDELLYQIRRYYSWLLEQEPYKSIAE
FT                   LGHAPYLAEAALKALYTGKDPDAELIAIYERAMLNTPPTEDRPTKVVHEANVTAASSTA
FT                   TQTSTTSPTVTSTSGASTSSSSGTTSAPLASTTPPASVTPTPSVGTTTPTTPTVRAANL
FT                   RTSQDTERQRRMRESQLNVRGENDDEDVPAASEFALPRVPTLGAKIRVPKFKGAIVLNK
FT                   DHLIKYTPDQRDLSNTRATQDQFEKWYSGVRNEIEKTDDEMALLLNGFMVWCMENGTSP
FT                   DLSGSWTMMEGEEQVSYPLEPFCRHAQPTLRSIMAHFSDAATAYVVLRNQKSRYMPRYG
FT                   LKRGLNDYSLAPYAFDFYEITSTSPLRAREAHAQMKAAAIRGKASRMFGLDGNVSAQSE
FT                   NTERHTVEDVNTRVHSLSGANML"
FT   mat_peptide     <1. .672
FT                   /product="NIb polymerase"
FT   mat_peptide     673. .1620
FT                   /product="virion protein"
XX
SQ   Sequence 1794 BP; 517 A; 414 C; 456 G; 407 T; 0 other;

  AF035641  Length: 1794  July 8, 2003 08:45  Type: N  Check: 3343  ..

       1  gggaacaaca gtgggcagcc atccaccgtc gttgacaaca caattatggt
      51  cataatagca atgcaatatg caatcagtaa ggctgagttt ccagctggac
     101  ggttgaggga tcaaattcga tattttgcta atggtgacga ccttgtggtt
     151  gcagttgatc caagtttgag cgataggatc tcatcattcg gcgcgagttt
     201  tgccgaactt ggtctgagct acgatttttc aaataaagtg aatgatcgat
     251  ctgagctaca attcatgtct catactggta agctgattga tgggatatac
     301  ataccaatgc tggaaagaga acgcatttgt gccatattgg aatggagtcg
     351  cagcgatgaa ccacaatttc aactggacgc aataagcgct gccatgatag
     401  aggcatgggg cgacgacgag ctcttatacc agattagacg atattatagt
     451  tggctcctgg agcaagaacc atacaagagc atagctgaac tggggcacgc
     501  accataccta gctgaagccg ccttgaaggc gctgtacact ggtaaggacc
     551  cagatgcgga attgattgcc atctatgagc gggctatgtt gaacacacca
     601  ccaacggaag atcgaccgac aaaagtggtg cacgaagcta acgtcaccgc
     651  cgcatcttca acagcaactc agacttctac gacatcacca acagtcacat
     701  ctactagcgg tgcgtcaact tcgtcgtcga gcggaacaac atctgcgcca
     751  ctagcaagca caactccacc agcatctgtg acgccgacac catcagtagg
     801  aaccactacg ccaacaacac caaccgtgcg agccgcgaac ttgcgaacct
     851  cacaggacac ggagaggcaa aggcgaatgc gagagagcca gctcaatgtg
     901  agaggcgaga acgacgatga agacgtgcca gcagcatcag agtttgcatt
     951  accacgggtg ccaacattag gagcaaagat tcgagtgcca aagtttaaag
    1001  gagccatagt actcaacaag gatcatctga ttaaatacac acctgatcag
    1051  cgtgatttat ccaacacacg cgcgacacaa gatcaatttg agaagtggta
    1101  ctcaggtgtg agaaatgaaa ttgagaagac ggatgatgaa atggcactat
    1151  tgctgaatgg tttcatggtt tggtgtatgg aaaatggaac atcgccagat
    1201  ttatccgggt cttggactat gatggaaggt gaagagcagg tatcgtatcc
    1251  actcgaacca ttctgtcgcc atgcacagcc aacgttgcgg tcaataatgg
    1301  cacattttag tgatgccgca acagcatatg tagtcctacg caatcagaag
    1351  tctagatata tgccacggta tggacttaaa agaggtttga acgactattc
    1401  attggcaccg tacgctttcg acttctatga aataacttcc acatcgcctc
    1451  ttcgggctag agaggcgcat gcgcagatga aagccgcagc catcaggggc
    1501  aaggcatcta ggatgtttgg tcttgacggc aatgtatcag cccaatcgga
    1551  gaacacagag aggcatacag ttgaggatgt taacacccga gttcactcac
    1601  tctcgggtgc gaatatgctg taactgtctg cccacttact cgcttggtaa
    1651  acctgtgtta cccttgaacc tatatctgta ttgtgtggct tagccacgtg
    1701  ttactttatg gagtgccagc attcatttag ctcgggtcct gtgagtggtc
    1751  taaccacgtg ggcgcggtct gggtgcggtg cagggaaaaa aaga