Sequence of DPV Ryegrass mosaic virus

Ryegrass mosaic virus strain RGMV-D polyprotein gene, partial cds.

ACC No: AF035642

Dated: 2003-06-28 | Length: 1794 | CRC: -343043108

                !!NA_SEQUENCE 1.0
ID   AF035642   standard; RNA; VRL; 1794 BP.
XX
AC   AF035642;
XX
SV   AF035642.1
XX
DT   02-JUL-1998 (Rel. 56, Created)
DT   28-JUN-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Ryegrass mosaic virus strain RGMV-D polyprotein gene, partial cds.
XX
KW   .
XX
OS   Ryegrass mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Rymovirus.
XX
RN   [1]
RP   1-1794
RX   MEDLINE; 99399241.
RX   PUBMED; 10470255.
RA   Mackenzie A.M., Webster D.E., Gibbs M.J., Thomas B.J., Gibbs A.J.;
RT   "Australian isolates of ryegrass mosaic rymovirus and their relationships";
RL   Arch. Virol. 144(2):309-316(1999).
XX
RN   [2]
RP   1-1794
RA   Gibbs A.J., Mackenzie A.M., Keese P.;
RT   ;
RL   Submitted (25-NOV-1997) to the EMBL/GenBank/DDBJ databases.
RL   Research School of Biological Sciences, Australian National University,
RL   Biology Place, Acton, Canberra, ACT 2601, Australia
XX
DR   GOA; Q9YK95.
DR   SPTREMBL; Q9YK95; Q9YK95.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1794
FT                   /db_xref="taxon:40666"
FT                   /mol_type="genomic RNA"
FT                   /organism="Ryegrass mosaic virus"
FT                   /strain="RGMV-D (Wales, U.K.)"
FT   CDS             <1. .1623
FT                   /codon_start=1
FT                   /db_xref="GOA:Q9YK95"
FT                   /db_xref="SPTREMBL:Q9YK95"
FT                   /product="polyprotein"
FT                   /protein_id="AAC25027.1"
FT                   /translation="GNNSGQPSTVVDNTIMVIIAMQYAISKAEFPAGRLRDQIRYFANG
FT                   DDLVVAVEPSLSDKISSFSASFAELGLSYDFSNKVNDRSELQFMSHTGKLIDGIYIPML
FT                   ERERICAILEWSRSDEPQFQLDAISAAMIEAWGDDELLYQIRRYYSWLLEQEPYKSIAE
FT                   LGHAPYLAEAALKALYTGKDPDAELITIYERAMLNTPPTEDRPTKVVHEANVTAASSAA
FT                   TQTSTTSPTVTSTSGASTSTSSGTTSAPLASTTPPASATTTPSAGTTTPTTPTVRAANL
FT                   RTSQDTERQRRMRESQLNVRGENDDEDVPAASEFALPRLPTLGAKIRVPKFKGAIVLNK
FT                   DHLIKYTPDQRDLSNTRATQEQFEKWYSGVRNEVEKTDEEMALLLNGFMVWCMENGTSP
FT                   DLSGSWTMMEGEEQISYPLEPFCRHAQPTLRSIMAHFSDAATAYVVLRNQKSRYMPRYG
FT                   LKRGLNDYSLAPYAFDFYEITSTSPLRAREAHAQMKAAAIRGKASRMFGLDGNVSAQSE
FT                   NTERHTVEDVNTRVHSLSGANML"
FT   mat_peptide     <1. .672
FT                   /product="NIb polymerase"
FT   mat_peptide     673. .1620
FT                   /product="virion protein"
XX
SQ   Sequence 1794 BP; 525 A; 416 C; 451 G; 402 T; 0 other;

  AF035642  Length: 1794  July 8, 2003 08:45  Type: N  Check: 8262  ..

       1  gggaacaaca gtgggcagcc atccaccgtc gttgacaaca caatcatggt
      51  cataatagca atgcaatatg caatcagcaa ggccgaattt ccagctggac
     101  ggttgaggga tcaaattcga tattttgcca atggtgatga ccttgtggtt
     151  gcagttgaac caagtttgag cgataaaatt tcatcgttca gcgcgagttt
     201  tgccgaactt ggcctgagtt atgatttttc aaacaaagtg aatgatcgat
     251  ctgagctaca attcatgtcc catactggaa agctgattga tgggatatac
     301  ataccaatgt tggaaagaga acgcatctgt gcaatattgg aatggagtcg
     351  cagcgacgaa ccacaatttc aactggacgc aataagcgct gctatgatag
     401  aggcatgggg tgacgacgag ctcttatacc agattagacg atattatagt
     451  tggctccttg agcaagaacc atacaagagc atagctgaac tggggcacgc
     501  accatacctg gctgaagccg ccttgaaggc gctatacact ggtaaggacc
     551  cagatgcaga attgattacc atctatgagc gggctatgct gaacacacca
     601  ccaacggagg atcggccgac aaaagtggta cacgaagcta acgttaccgc
     651  cgcatcttca gcagcaactc agacttctac gacatcaccg acagtcacat
     701  ctactagtgg tgcgtcaact tcgacgtcga gcggaaccac gtctgcgcca
     751  ctagcaagca caactccacc agcatctgca acaacgacac catcggcagg
     801  aaccactacg ccaacgacac caactgtgag agccgcaaac ctgcggacat
     851  cacaggacac agagaggcaa aggcgaatgc gggaaagcca actcaatgtg
     901  agaggtgaga atgacgatga ggacgtgcca gcagcatcgg aatttgcact
     951  accgcggcta ccaacattag gtgcaaagat tcgagtgcct aaatttaaag
    1001  gagctatagt acttaacaaa gatcatctga ttaaatacac acctgaccag
    1051  cgtgatttat ccaacacacg cgcgacacaa gagcaatttg agaaatggta
    1101  ctcaggtgtg agaaatgaag ttgagaagac ggatgaagaa atggcacttt
    1151  tgctgaatgg cttcatggtt tggtgcatgg aaaatggcac atcgccagat
    1201  ttatccgggt cttggactat gatggaaggt gaagaacaaa tatcgtatcc
    1251  actcgaacca ttctgtcgcc acgcacagcc aacgttgcgg tcaataatgg
    1301  cacattttag tgatgccgca acagcatatg tagtcctgcg caatcagaag
    1351  tctagatata tgccacggta tggacttaaa aggggtttga atgactattc
    1401  actggcaccg tacgctttcg acttctatga aataacttcc acatcgcctc
    1451  ttcgggctag agaggcgcat gcgcagatga aagccgcagc catcaggggc
    1501  aaggcatcta ggatgtttgg tcttgacggc aatgtatcag cccaatcgga
    1551  gaacacagag aggcatacag ttgaggatgt taacactcga gttcactcac
    1601  tctcgggtgc gaatatgctg taactgtctg cccacttact cgcttggtaa
    1651  acctgtgtta ccctagaacc tatatctgta ttgtgtggct tagccacgtg
    1701  ttgctttatg gagtgccagc attcatttag ctcgggtcct gtgagtggtc
    1751  taaccacgtg ggcgcggtct gggtgcggtg cagggaaaaa aaga