Sequence of DPV Thosea asigna virus
Thosea asigna virus capsid protein precursor (TaV-CP) mRNA, complete cds.
ACC No: AF062037
Dated: 2000-03-03 | Length: 2482 | CRC: -2026333308
ID AF062037; SV 1; linear; mRNA; STD; VRL; 2482 BP.
XX
AC AF062037;
XX
DT 11-NOV-1998 (Rel. 57, Created)
DT 03-MAR-2000 (Rel. 62, Last updated, Version 6)
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DE Thosea asigna virus capsid protein precursor (TaV-CP) mRNA, complete cds.
XX
KW .
XX
OS Thosea asigna virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tetraviridae;
OC Betatetravirus.
XX
RN [1]
RP 1-2482
RX PUBMED; 10423156.
RA Pringle F.M., Gordon K.H., Hanzlik T.N., Kalmakoff J., Scotti P.D.,
RA Ward V.K.;
RT "A novel capsid expression strategy for Thosea asigna virus
RT (Tetraviridae)";
RL J. Gen. Virol. 80(Pt 7):1855-1863(1999).
XX
RN [2]
RP 1-2482
RA Pringle F.M., Kalmakoff J., Ward V.K.;
RT ;
RL Submitted (29-APR-1998) to the INSDC.
RL Microbiology, University of Otago, 700 Cumberland Street, PO Box 56,
RL Dunedin 9001, New Zealand
XX
RN [3]
RC Sequence update by submitter
RP 1-2482
RA Pringle F.M., Kalmakoff J., Ward V.K.;
RT ;
RL Submitted (12-NOV-1998) to the INSDC.
RL Microbiology, University of Otago, 700 Cumberland Street, PO Box 56,
RL Dunedin 9001, New Zealand
XX
CC On Nov 13, 1998 this sequence version replaced gi:3859469.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2482
FT /organism="Thosea asigna virus"
FT /host="Setothosea asigna"
FT /mol_type="mRNA"
FT /note="old name for host is Thosea asigna"
FT /db_xref="taxon:83810"
FT CDS 88. .2361
FT /codon_start=1
FT /gene="TaV-CP"
FT /product="capsid protein precursor"
FT /note="forms T=4 capsids with 240 copies of the large and
FT small capsid proteins per capsid"
FT /db_xref="InterPro:IPR005313"
FT /db_xref="UniProtKB/TrEMBL:Q9YK87"
FT /inference="non-experimental evidence, no additional
FT details recorded"
FT /protein_id="AAC97195.1"
FT /translation="MIVLLKMRLSMNQRVLEQNLKNLKIGKPLGFMRSSGGQEQLVAAL
FT ANLIKCPVCNSSLRTEHEPSSWGRGTIQEVEQALEWIKEELECLVCPQLQEDTLLSFEN
FT PTEGSSNLKDKSMPFRPRSRRLRGPRPQNLGVRAEGRGSLLTCGDVEENPGPTTVAGLV
FT QEAVGGLNKATKTAPGKRTRRRRRNGKGRIGNPNQPFSISAGAPMSKIPALRGTLAMTE
FT PISPSSVGWLETNLDPCGEYKSTLDYGKVPDGAIPMSVCGQFRETFTIRHPGANPMLAP
FT LDGSMWTLGIIRTNLWRTPFLLIADMNNAEISDESLDEVARSFNNYVGDLADASHPNWV
FT ETSQAGLYWSIQRWTALIGVPPPSDTGVSPYITDFRITGSGFTVSSNTPSLINQGMVVV
FT AQFNPNTENKEVIPHSESGETPLGWSRLYSVTASTVAITYIQPGVGGAQNQRTVTLNRS
FT GSVINSSVLPQVTQGYRFNNGDTYAVGDTLRFQLTERDSGGYTVRLQRSADGTTFTNIG
FT PLSTTTGQNGGFNTDSGLGVLLEGDVLAGRVNMLTLPPFTQSDLMQQTPKTCVFQIKEG
FT GFYVRQDIWQPVYNMTPASRYAPVRFVSNAITLDALNSAVGTIRDTADSNYGFALCHMT
FT SLPLACAPFIKAEMRFEAVPGRNSPWGPFATSTPPKDEVALTISRTVMDLEPFAMPLAY
FT NGWGLMFSKVLSIVRRIPKALRTASNVAETVAGCVEDAQAGVTKVYETVRGRRGAMRDM
FT TLQQ"
FT mat_peptide 88. .552
FT /gene="TaV-CP"
FT /product="unknown"
FT /note="not encapsidated in the mature virion"
FT misc_feature 106
FT /gene="TaV-CP"
FT /note="alternate position for initiation methionine"
FT mat_peptide 553. .2172
FT /gene="TaV-CP"
FT /product="large capsid protein"
FT mat_peptide 2173. .2358
FT /gene="TaV-CP"
FT /product="small capsid protein"
XX
SQ Sequence 2482 BP; 624 A; 583 C; 654 G; 621 T; 0 other;
af062037 Length: 2482 03-MAR-2000 Type: N Check: 1825 ..
1 tagacccggg gctccaagtg gaagtctcgg ggaaaccctt tgaaggggtc
51 ccagttccag aaaaattaaa ttttgaagtt acaacgaatg atagtgcttt
101 tgaaaatgag attgtcaatg aaccagagag tgttggaaca gaatttaaag
151 aatttgaaaa tagggaagcc tttaggtttc atgaggtcgt ccgggggcca
201 ggagcagctg gtagcagccc tggcgaattt gatcaaatgc cccgtgtgca
251 acagctccct tcggacggaa cacgagccgt cgagttgggg gcgagggacg
301 attcaggagg tcgagcaagc cctagagtgg atcaaggagg agctggagtg
351 cctagtgtgc ccccagctcc aggaagatac gctcctgagc ttcgagaacc
401 cgacagaagg gtcgtccaac ttgaaggaca agtccatgcc cttcaggccc
451 agatccaggc gcttacgggg gcctcgcccc caaaaccttg gggtaagggc
501 cgagggcagg ggaagtcttc taacatgcgg ggacgtggag gaaaatcccg
551 gccccaccac ggtggcaggc ctggtccaag aggcggttgg tggtctcaac
601 aaggcaacca aaaccgctcc tggtaaaagg acccggcggc gtagacgaaa
651 tggaaaaggg aggattggta atcccaatca acccttttca atttcggccg
701 gtgcgcctat gtctaaaata cctgcccttc ggggcaccct agcgatgacc
751 gaacctatat ccccctcgtc ggtcgggtgg ttggaaacca acttggaccc
801 ttgtggggag tataaatcca ctttagacta tgggaaagtc cctgatgggg
851 ctatccctat gtctgtttgt gggcaatttc gagagacctt cactattcgg
901 cacccgggag cgaaccccat gttggcccct cttgatggtt ccatgtggac
951 cctcgggata ataaggacca acctgtggag aactccgttt ttattaattg
1001 cagatatgaa taatgctgaa atatctgatg aatccttaga cgaggtggcc
1051 cggtctttca acaattatgt gggagacctg gccgacgcgt cccaccctaa
1101 ttgggttgaa actagtcagg ctggccttta ttggtccatt caaaggtgga
1151 cagctctaat aggtgttccc ccccccagtg atacaggtgt gtctccgtac
1201 ataacggact tccgtataac tgggtcgggt ttcactgtgt cctcaaacac
1251 accgtctctg attaatcagg gtatggttgt tgtagcacag tttaacccta
1301 atactgagaa taaagaggtt attcctcact ctgaatctgg ggagaccccg
1351 ttaggctggt cccgcctgta tagtgttaca gcatcaactg tcgcaattac
1401 ttatatacaa cctggggttg gaggtgcaca aaatcagagg acagtgacct
1451 taaataggtc aggttctgtg ataaatagtt cagtccttcc ccaggtgact
1501 caagggtacc gttttaataa tggggacaca tatgctgtag gtgatacgct
1551 tcgctttcag ctgactgaga gggattctgg tggttacaca gtccggcttc
1601 aaaggtcggc tgacggtacc acttttacga atataggtcc gctttcgaca
1651 acgacaggcc agaatggcgg ttttaacaca gatagcgggc ttggagtcct
1701 tctggaagga gacgtgttag caggtcgtgt taatatgctg actctacctc
1751 cttttactca atcagatttg atgcagcaaa cgccgaagac gtgtgtcttc
1801 caaataaaag aaggtggttt ttatgtacgg caggatattt ggcagccggt
1851 gtacaatatg acacctgcga gccggtatgc tcctgttcgt tttgtgtcaa
1901 atgccataac tctcgatgca ttaaattcag cagtgggtac aataagagac
1951 accgctgact ccaactatgg ctttgcccta tgtcatatga cctctttgcc
2001 ccttgcatgc gctccgttta taaaagcgga gatgcgcttt gaggcggtcc
2051 ctgggagaaa ttccccctgg ggaccctttg ccacctccac tcctccaaag
2101 gacgaggttg ctttgactat atccagaact gtgatggacc ttgaaccatt
2151 tgctatgccc ctggcttata atggctgggg gttgatgttc tcgaaagtcc
2201 tttctattgt ccgaaggata cccaaagccc tcagaactgc cagcaatgtt
2251 gcagagactg ttgcaggctg tgtagaggat gctcaggccg gcgtcacgaa
2301 agtgtatgaa actgttcgtg ggcgccgagg agctatgaga gatatgactt
2351 tacaacaatg aggtcggagt ttttaaattg ggtttttaat taaaaacccc
2401 gcgtgaccga ctctattaaa tatcataatt tattaaacat tatcatccgt
2451 ttccaaaaac tagtaaaacc tttttccacg cg