Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate W polyprotein gene, partial cds.

ACC No: AF063221

Dated: 1998-09-03 | Length: 1763 | CRC: 668665506

                !!NA_SEQUENCE 1.0
ID   AF063221   standard; RNA; VRL; 1763 BP.
XX
AC   AF063221;
XX
SV   AF063221.1
XX
DT   03-SEP-1998 (Rel. 56, Created)
DT   03-SEP-1998 (Rel. 56, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate W polyprotein gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1763
RA   Jain R.K., Pappu H.R., Pappu S.S., Varma A., Ram R.D.;
RT   "Molecular characterization of papaya ringspot potyvirus isolates from
RT   India";
RL   Unpublished.
XX
RN   [2]
RP   1-1763
RA   Pappu H.R.;
RT   ;
RL   Submitted (05-MAY-1998) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, Coastal Plain Experiment Station, University of Georgia,
RL   Moore Highway, Tifton, GA 31793-0748, USA
XX
DR   SPTREMBL; O89957; O89957.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1763
FT                   /db_xref="taxon:12205"
FT                   /note="isolate from India"
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="W"
FT                   /specific_host="Carica papaya L."
FT   CDS             <1. .1557
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O89957"
FT                   /product="polyprotein"
FT                   /protein_id="AAC33736.1"
FT                   /translation="GNNSGQPSTVVDNTLMVLITMYYALRKAGYDTKTQEDICVFYING
FT                   DDLCIAIHPDHEHVLDSFSNSFAELGLKYDFTQRHRNKQDLWFMSHRGILIDDIYIPKL
FT                   EPERIVAILEWDKSKLPEHRLEAITAAMIESWGYGELTHQIRRFYQWVLEQAPFNDLAK
FT                   QGRAPYVSEVGLRRLYTSERGSMDELEAYIDKYFERERGDSPELLVYHESKSSEDYQFV
FT                   CSTTNEHVYHQSKTEAVDAGLDGKLKEKENEKEKIKEKEKEKKNADDGNDVSSSTKVGE
FT                   RDIDVNAGTSGTFTVPRIKSFTDKMILPRIKEKTVLNLNHLLQYNPQQIDISNTRATQS
FT                   QFEKWYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKP
FT                   LIEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVN
FT                   SKTPDRAREAHMQMKAAALRNTNRRMFGIDGSVSNKEENTERHTVEDVNRDMHSLLGMR
FT                   N"
FT   mat_peptide     <1. .699
FT                   /product="RNA polymerase"
FT   mat_peptide     700. .1554
FT                   /product="capsid protein"
FT   3'UTR           1558. .1763
XX
SQ   Sequence 1763 BP; 544 A; 331 C; 437 G; 451 T; 0 other;

AF063221  Length: 1763  December 21, 2001 14:51  Type: N  Check: 996  ..

       1  gggaacaata gtgggcaacc ttcgacagtt gtcgacaaca cattgatggt
      51  cttgatcaca atgtattacg cactacgtaa ggctggttat gatacgaaga
     101  cccaagaaga catttgtgtg ttttacatta atggcgatga tctctgtatc
     151  gccattcacc cggaccatga gcatgttctt gactcattct ctaactcgtt
     201  tgctgagctt ggacttaagt atgatttcac gcagaggcac cggaacaagc
     251  aagatttgtg gtttatgtca catcgaggta ttctgatcga tgacatatac
     301  attccaaaac ttgaacctga gagaattgtg gcaattcttg agtgggacaa
     351  atctaagctt ccggagcatc gattggaggc gatcacagca gcaatgatag
     401  agtcatgggg ttatggggaa ttaacgcatc agatccgcag gttctaccaa
     451  tgggtccttg agcaagctcc ttttaacgat ttggctaaac agggaagggc
     501  cccgtacgtc tctgaggtcg gcttgagaag attatacaca agtgaacgtg
     551  ggtctatgga tgaattagag gcgtatatag ataaatactt cgagcgagag
     601  cgaggtgatt ctcctgagtt gttggtgtac cacgaatcaa agagttctga
     651  agattaccaa ttcgtgtgca gtacaaccaa cgaacacgtg taccatcaat
     701  ccaagacaga agcagtggac gctggcttgg atggtaagtt aaaggagaaa
     751  gagaatgaaa aggaaaagat aaaagaaaaa gaaaaagaaa agaaaaatgc
     801  tgatgacgga aatgatgtgt catctagcac aaaagttgga gagagagata
     851  tagatgtcaa tgctgggact agtggaactt tcacagttcc aaggattaag
     901  tcattcactg acaagatgat tctaccaaga attaaggaga aaactgtcct
     951  taatttgaat caccttcttc agtacaaccc acaacaaatt gatatctcaa
    1001  acactcgtgc cacacaatca caatttgaga agtggtacga gggagtgagg
    1051  aatgattatg gattgaacga taatgagatg caagtgatgt taaatggctt
    1101  gatggtttgg tgtatcgaga atggtacatc cccagacata tctggtgtct
    1151  gggtcatgat ggatggggaa actcaggttg actatccaat aaagcccttg
    1201  attgaacatg caactccatc atttagacaa atcatggctc acttcagtaa
    1251  cgcggctgag gcatacatcg caaagagaaa tgctactgag aggtacatgc
    1301  cgcggtatgg gataaagaga aatttgactg acataagcct cgctagatat
    1351  gcttttgatt tctatgaggt taattcaaaa acacctgata gggctcgcga
    1401  agcacatatg cagatgaagg ctgcagcgct gcgaaacact aatcgtagaa
    1451  tgtttggaat agacggcagt gtcagtaaca aggaagaaaa cacggagaga
    1501  cacacagtgg aagatgtcaa cagagacatg cactctctcc tgggtatgcg
    1551  caattgaata ctcgcgcttg tgtgtttgtt gggcctggct caaccctgtt
    1601  tcaccttata gtactaagta agcattagaa tacagtgtgg ctgtgccacc
    1651  gcttctattt tatagtgagg gtagccctcc gtgcttttag tattattcga
    1701  gttctctgag tctccataca gtgtgggtgg cccacgtgct attcgagcct
    1751  cttagaatga gag