Sequence of DPV Beak and feather disease virus
Beak and feather disease virus, complete genome.
ACC No: AF071878
Dated: 2000-03-03 | Length: 1993 | CRC: -1253169029
!!NA_SEQUENCE 1.0
ID AF071878 standard; circular DNA; VRL; 1993 BP.
XX
AC AF071878;
XX
SV AF071878.1
XX
DT 09-SEP-1998 (Rel. 56, Created)
DT 03-MAR-2000 (Rel. 62, Last updated, Version 2)
XX
DE Beak and feather disease virus, complete genome.
XX
KW .
XX
OS beak and feather disease virus
OC Viruses; ssDNA viruses; Circoviridae; Circovirus.
XX
RN [1]
RP 1-1993
RX MEDLINE; 99003925.
RA Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W.,
RA Latimer K.S., Lukert P.D.;
RT "Beak and feather disease virus and porcine circovirus genomes:
RT intermediates between the geminiviruses and plant circoviruses";
RL Arch. Virol. 143(9):1723-1744(1998).
XX
RN [2]
RP 1-1993
RA Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W.,
RA Latimer K.S., Lukert P.D.;
RT ;
RL Submitted (12-JUN-1998) to the EMBL/GenBank/DDBJ databases.
RL Clinical Investigation, Dwight D. Eisenhower Army Medical Center, Bldg.
RL 332, Fort Gordon, GA 30905-5650, USA
XX
DR SPTREMBL; O90235; O90235.
DR SPTREMBL; O90236; O90236.
DR SPTREMBL; O90237; O90237.
XX
FH Key Location/Qualifiers
FH
FT source 1. .1993
FT /db_xref="taxon:77856"
FT /organism="beak and feather disease virus"
FT CDS <108. .1007
FT /codon_start=1
FT /db_xref="SPTREMBL:O90235"
FT /note="rolling-circle replication protein homolog; Rep
FT protein; TCT (serine) codon appears to be the translation
FT initiation codon"
FT /gene="V1"
FT /product="replication-associated protein"
FT /protein_id="AAC34816.1"
FT /translation="SPEDHTRPGTIPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEF
FT YYAIVGREKGEQGTPHLQGYFHFKNKKRLSALKKMLPRGHFERAKGSDADNEKYCSKEG
FT DVILTLGIVARDGHRAFDGAVAAVMSGPKMKEVAREFPDIYVRHGRGLHSLSLLVGSRP
FT RDFKTEVDVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYC
FT EMLRLCDRYPHKVPVKGAFVEFTSKRIIITSNKAPETWYKEDCDPKPLFRRFTRVWWYN
FT IDKLEQVRPDFLAHPINF"
FT CDS 550. .1026
FT /codon_start=1
FT /db_xref="SPTREMBL:O90236"
FT /gene="V2"
FT /product="unknown"
FT /protein_id="AAC34817.1"
FT /translation="MGGACIASRYWLVPARVILRLRLTSFTGHRGVARVDGPMSSLGPN
FT IIKCAVNGGMDMMGKMSSSWTTFMGGYLIARCSASATVTHIKCQLRALLWSLRARGSLS
FT RAIRPRRPGTRRTVTRSHCSGDSLVFGGTTLTSWNKSGLISSPTPSIFDSLGDV"
FT CDS complement(1240. .>1974)
FT /codon_start=1
FT /db_xref="SPTREMBL:O90237"
FT /note="TCT (serine) codon appears to be the translation
FT initiation codon"
FT /gene="C1"
FT /product="capsid protein"
FT /protein_id="AAC34818.1"
FT /translation="SNYACAIFQVRRRYARPYYRRRHIRRYRRRRRHFRRRRFSTNRVY
FT TLRLTRQFKFQIQKQTTSTGNLIFSSDFVTFALSDFITNTPNPQTLNFENYRIKLAKME
FT MRPTWGHYTIQGDGFGHTAVIQDSRISKFKTVADQTQDPLAPFDGARKWYVSRGFKRLL
FT RPKPQITINDLTTANQSAALWLNSARTGWIPLQGGPNAAGAKVRHYGIGFSFPQPEQTI
FT TYVTKLTIYVQFRQFAPNNPST"
FT stem_loop join(1975. .1993,1. .19)
XX
SQ Sequence 1993 BP; 426 A; 455 C; 603 G; 509 T; 0 other;
AF071878 Length: 1993 September 18, 2002 10:52 Type: N Check: 3211 ..
1 ttagtattac ccgccgcctg gggcaccggg gcaccgcagc tattggctgc
51 cttgcggagg tgcccgcccc tagggaggag taaatggcgc cgttaggcgc
101 ccgttaatct ccggaggatc acactcgtcc gggaaccatc ccgtccaagg
151 agggctctgg ctgtcgccgt tggtgtttca ctcttaacaa ccctacagac
201 ggcgaaatcg aattcgtccg ttctctcggg cctgacgaat tctactatgc
251 catcgttgga cgggaaaagg gtgagcaagg cactccccat ttgcaaggct
301 actttcattt taaaaataag aagcgactga gcgcgcttaa gaaaatgctg
351 ccgcgaggtc attttgagcg cgctaaaggg agcgacgcgg ataacgagaa
401 gtattgcagt aaagaggggg acgtcatact taccctgggc attgtggcga
451 gagacggtca ccgcgctttc gatggagctg ttgctgccgt gatgtccgga
501 cccaaaatga aggaagtcgc gcgagagttc ccagatatct acgtcaggca
551 tgggcggggc ttgcatagcc tctcgctatt ggttggttcc cgcccgcgtg
601 attttaagac tgaggttgac gtcatttacg ggccaccggg gtgtggcaag
651 agtcgatggg ccaatgagca gcctgggacc aaatattata aaatgcgcgg
701 tgaatggtgg gatggatatg atggggaaga tgtcgtcatc ttggacgact
751 tttatgggtg gctaccttat tgcgagatgc tccgcctctg cgaccgttac
801 ccacataaag tgccagttaa gggcgctttt gtggagttta cgagcaagag
851 gatcattatc acgagcaata aggccccgga gacctggtac aaggaggact
901 gtgacccgaa gccactgttc cggagattca ctcgtgtttg gtggtacaac
951 attgacaagt tggaacaagt ccggcctgat ttcctcgccc accccatcaa
1001 tttttgatag tctcggtgat gtttaataaa gttaggcgtc gggccgaagg
1051 cccgatgccg caggggggga ccccctgccg gagggttcgc agggccgtca
1101 ggcccgagaa cccgaccagc ccggagggcc tagtctgtat cggggggggg
1151 gccccggggg gtccccccga cacgacgaac acggtagcga cgaaggcgcc
1201 aataaacact caaaaaggta tttgctgctt gagtctttat taagtactgg
1251 gattgttagg ggcaaactga cggaattgaa catatatagt gagcttggtt
1301 acataagtga tcgtttgttc tggctgaggg aagctgaagc caatgccgta
1351 gtgcctgact ttcgctcctg ctgcgttggg tcctccttgt agtgggatcc
1401 agccggttct ggcgctgttt agccacaatg ctgcagactg gttcgctgtg
1451 gtgaggtcgt ttatcgttat ttgtggtttt ggtctgagga gacgtttgaa
1501 tcccctgcta acataccatt ttctggcacc gtcgaaaggt gccagtgggt
1551 cttgtgtttg gtctgcaaca gttttaaatt tacttatcct ggagtcttgg
1601 attacggccg tgtggccgaa tccgtctcct tgtatggtgt agtgtcccca
1651 tgtgggcctc atttccattt tagctaactt aatccggtag ttttcgaaat
1701 tcagtgtttg tgggtttggt gtgtttgtta tgaagtctga caatgcaaag
1751 gttacaaagt cggagctaaa aattaggttg ccagtactgg tggtttgttt
1801 ttgaatttgg aatttgaatt ggcgtgtgag tctgagagtg taaaccctat
1851 tggttgagaa acggcgtctg cggaagtgtc tacgtcgccg gcggtatcgc
1901 ctgatgtgac gtctgcggta gtatgggcgg gcataccgtc gtctaacctg
1951 aaatatagcg catgcgtagt tagaggtgcc ccataggcgg cgg