Sequence of DPV Beak and feather disease virus
Beak and feather disease virus, complete genome.
ACC No: AF071878
Dated: 2000-03-03 | Length: 1993 | CRC: -1253169029
!!NA_SEQUENCE 1.0 ID AF071878 standard; circular DNA; VRL; 1993 BP. XX AC AF071878; XX SV AF071878.1 XX DT 09-SEP-1998 (Rel. 56, Created) DT 03-MAR-2000 (Rel. 62, Last updated, Version 2) XX DE Beak and feather disease virus, complete genome. XX KW . XX OS beak and feather disease virus OC Viruses; ssDNA viruses; Circoviridae; Circovirus. XX RN [1] RP 1-1993 RX MEDLINE; 99003925. RA Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W., RA Latimer K.S., Lukert P.D.; RT "Beak and feather disease virus and porcine circovirus genomes: RT intermediates between the geminiviruses and plant circoviruses"; RL Arch. Virol. 143(9):1723-1744(1998). XX RN [2] RP 1-1993 RA Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W., RA Latimer K.S., Lukert P.D.; RT ; RL Submitted (12-JUN-1998) to the EMBL/GenBank/DDBJ databases. RL Clinical Investigation, Dwight D. Eisenhower Army Medical Center, Bldg. RL 332, Fort Gordon, GA 30905-5650, USA XX DR SPTREMBL; O90235; O90235. DR SPTREMBL; O90236; O90236. DR SPTREMBL; O90237; O90237. XX FH Key Location/Qualifiers FH FT source 1. .1993 FT /db_xref="taxon:77856" FT /organism="beak and feather disease virus" FT CDS <108. .1007 FT /codon_start=1 FT /db_xref="SPTREMBL:O90235" FT /note="rolling-circle replication protein homolog; Rep FT protein; TCT (serine) codon appears to be the translation FT initiation codon" FT /gene="V1" FT /product="replication-associated protein" FT /protein_id="AAC34816.1" FT /translation="SPEDHTRPGTIPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEF FT YYAIVGREKGEQGTPHLQGYFHFKNKKRLSALKKMLPRGHFERAKGSDADNEKYCSKEG FT DVILTLGIVARDGHRAFDGAVAAVMSGPKMKEVAREFPDIYVRHGRGLHSLSLLVGSRP FT RDFKTEVDVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYC FT EMLRLCDRYPHKVPVKGAFVEFTSKRIIITSNKAPETWYKEDCDPKPLFRRFTRVWWYN FT IDKLEQVRPDFLAHPINF" FT CDS 550. .1026 FT /codon_start=1 FT /db_xref="SPTREMBL:O90236" FT /gene="V2" FT /product="unknown" FT /protein_id="AAC34817.1" FT /translation="MGGACIASRYWLVPARVILRLRLTSFTGHRGVARVDGPMSSLGPN FT IIKCAVNGGMDMMGKMSSSWTTFMGGYLIARCSASATVTHIKCQLRALLWSLRARGSLS FT RAIRPRRPGTRRTVTRSHCSGDSLVFGGTTLTSWNKSGLISSPTPSIFDSLGDV" FT CDS complement(1240. .>1974) FT /codon_start=1 FT /db_xref="SPTREMBL:O90237" FT /note="TCT (serine) codon appears to be the translation FT initiation codon" FT /gene="C1" FT /product="capsid protein" FT /protein_id="AAC34818.1" FT /translation="SNYACAIFQVRRRYARPYYRRRHIRRYRRRRRHFRRRRFSTNRVY FT TLRLTRQFKFQIQKQTTSTGNLIFSSDFVTFALSDFITNTPNPQTLNFENYRIKLAKME FT MRPTWGHYTIQGDGFGHTAVIQDSRISKFKTVADQTQDPLAPFDGARKWYVSRGFKRLL FT RPKPQITINDLTTANQSAALWLNSARTGWIPLQGGPNAAGAKVRHYGIGFSFPQPEQTI FT TYVTKLTIYVQFRQFAPNNPST" FT stem_loop join(1975. .1993,1. .19) XX SQ Sequence 1993 BP; 426 A; 455 C; 603 G; 509 T; 0 other; AF071878 Length: 1993 September 18, 2002 10:52 Type: N Check: 3211 .. 1 ttagtattac ccgccgcctg gggcaccggg gcaccgcagc tattggctgc 51 cttgcggagg tgcccgcccc tagggaggag taaatggcgc cgttaggcgc 101 ccgttaatct ccggaggatc acactcgtcc gggaaccatc ccgtccaagg 151 agggctctgg ctgtcgccgt tggtgtttca ctcttaacaa ccctacagac 201 ggcgaaatcg aattcgtccg ttctctcggg cctgacgaat tctactatgc 251 catcgttgga cgggaaaagg gtgagcaagg cactccccat ttgcaaggct 301 actttcattt taaaaataag aagcgactga gcgcgcttaa gaaaatgctg 351 ccgcgaggtc attttgagcg cgctaaaggg agcgacgcgg ataacgagaa 401 gtattgcagt aaagaggggg acgtcatact taccctgggc attgtggcga 451 gagacggtca ccgcgctttc gatggagctg ttgctgccgt gatgtccgga 501 cccaaaatga aggaagtcgc gcgagagttc ccagatatct acgtcaggca 551 tgggcggggc ttgcatagcc tctcgctatt ggttggttcc cgcccgcgtg 601 attttaagac tgaggttgac gtcatttacg ggccaccggg gtgtggcaag 651 agtcgatggg ccaatgagca gcctgggacc aaatattata aaatgcgcgg 701 tgaatggtgg gatggatatg atggggaaga tgtcgtcatc ttggacgact 751 tttatgggtg gctaccttat tgcgagatgc tccgcctctg cgaccgttac 801 ccacataaag tgccagttaa gggcgctttt gtggagttta cgagcaagag 851 gatcattatc acgagcaata aggccccgga gacctggtac aaggaggact 901 gtgacccgaa gccactgttc cggagattca ctcgtgtttg gtggtacaac 951 attgacaagt tggaacaagt ccggcctgat ttcctcgccc accccatcaa 1001 tttttgatag tctcggtgat gtttaataaa gttaggcgtc gggccgaagg 1051 cccgatgccg caggggggga ccccctgccg gagggttcgc agggccgtca 1101 ggcccgagaa cccgaccagc ccggagggcc tagtctgtat cggggggggg 1151 gccccggggg gtccccccga cacgacgaac acggtagcga cgaaggcgcc 1201 aataaacact caaaaaggta tttgctgctt gagtctttat taagtactgg 1251 gattgttagg ggcaaactga cggaattgaa catatatagt gagcttggtt 1301 acataagtga tcgtttgttc tggctgaggg aagctgaagc caatgccgta 1351 gtgcctgact ttcgctcctg ctgcgttggg tcctccttgt agtgggatcc 1401 agccggttct ggcgctgttt agccacaatg ctgcagactg gttcgctgtg 1451 gtgaggtcgt ttatcgttat ttgtggtttt ggtctgagga gacgtttgaa 1501 tcccctgcta acataccatt ttctggcacc gtcgaaaggt gccagtgggt 1551 cttgtgtttg gtctgcaaca gttttaaatt tacttatcct ggagtcttgg 1601 attacggccg tgtggccgaa tccgtctcct tgtatggtgt agtgtcccca 1651 tgtgggcctc atttccattt tagctaactt aatccggtag ttttcgaaat 1701 tcagtgtttg tgggtttggt gtgtttgtta tgaagtctga caatgcaaag 1751 gttacaaagt cggagctaaa aattaggttg ccagtactgg tggtttgttt 1801 ttgaatttgg aatttgaatt ggcgtgtgag tctgagagtg taaaccctat 1851 tggttgagaa acggcgtctg cggaagtgtc tacgtcgccg gcggtatcgc 1901 ctgatgtgac gtctgcggta gtatgggcgg gcataccgtc gtctaacctg 1951 aaatatagcg catgcgtagt tagaggtgcc ccataggcgg cgg