Sequence of DPV Beak and feather disease virus

Beak and feather disease virus, complete genome.

ACC No: AF071878

Dated: 2000-03-03 | Length: 1993 | CRC: -1253169029

                !!NA_SEQUENCE 1.0
ID   AF071878   standard; circular DNA; VRL; 1993 BP.
XX
AC   AF071878;
XX
SV   AF071878.1
XX
DT   09-SEP-1998 (Rel. 56, Created)
DT   03-MAR-2000 (Rel. 62, Last updated, Version 2)
XX
DE   Beak and feather disease virus, complete genome.
XX
KW   .
XX
OS   beak and feather disease virus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1993
RX   MEDLINE; 99003925.
RA   Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W.,
RA   Latimer K.S., Lukert P.D.;
RT   "Beak and feather disease virus and porcine circovirus genomes:
RT   intermediates between the geminiviruses and plant circoviruses";
RL   Arch. Virol. 143(9):1723-1744(1998).
XX
RN   [2]
RP   1-1993
RA   Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W.,
RA   Latimer K.S., Lukert P.D.;
RT   ;
RL   Submitted (12-JUN-1998) to the EMBL/GenBank/DDBJ databases.
RL   Clinical Investigation, Dwight D. Eisenhower Army Medical Center, Bldg.
RL   332, Fort Gordon, GA 30905-5650, USA
XX
DR   SPTREMBL; O90235; O90235.
DR   SPTREMBL; O90236; O90236.
DR   SPTREMBL; O90237; O90237.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1993
FT                   /db_xref="taxon:77856"
FT                   /organism="beak and feather disease virus"
FT   CDS             <108. .1007
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O90235"
FT                   /note="rolling-circle replication protein homolog; Rep
FT                   protein; TCT (serine) codon appears to be the translation
FT                   initiation codon"
FT                   /gene="V1"
FT                   /product="replication-associated protein"
FT                   /protein_id="AAC34816.1"
FT                   /translation="SPEDHTRPGTIPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEF
FT                   YYAIVGREKGEQGTPHLQGYFHFKNKKRLSALKKMLPRGHFERAKGSDADNEKYCSKEG
FT                   DVILTLGIVARDGHRAFDGAVAAVMSGPKMKEVAREFPDIYVRHGRGLHSLSLLVGSRP
FT                   RDFKTEVDVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYC
FT                   EMLRLCDRYPHKVPVKGAFVEFTSKRIIITSNKAPETWYKEDCDPKPLFRRFTRVWWYN
FT                   IDKLEQVRPDFLAHPINF"
FT   CDS             550. .1026
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O90236"
FT                   /gene="V2"
FT                   /product="unknown"
FT                   /protein_id="AAC34817.1"
FT                   /translation="MGGACIASRYWLVPARVILRLRLTSFTGHRGVARVDGPMSSLGPN
FT                   IIKCAVNGGMDMMGKMSSSWTTFMGGYLIARCSASATVTHIKCQLRALLWSLRARGSLS
FT                   RAIRPRRPGTRRTVTRSHCSGDSLVFGGTTLTSWNKSGLISSPTPSIFDSLGDV"
FT   CDS             complement(1240. .>1974)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O90237"
FT                   /note="TCT (serine) codon appears to be the translation
FT                   initiation codon"
FT                   /gene="C1"
FT                   /product="capsid protein"
FT                   /protein_id="AAC34818.1"
FT                   /translation="SNYACAIFQVRRRYARPYYRRRHIRRYRRRRRHFRRRRFSTNRVY
FT                   TLRLTRQFKFQIQKQTTSTGNLIFSSDFVTFALSDFITNTPNPQTLNFENYRIKLAKME
FT                   MRPTWGHYTIQGDGFGHTAVIQDSRISKFKTVADQTQDPLAPFDGARKWYVSRGFKRLL
FT                   RPKPQITINDLTTANQSAALWLNSARTGWIPLQGGPNAAGAKVRHYGIGFSFPQPEQTI
FT                   TYVTKLTIYVQFRQFAPNNPST"
FT   stem_loop       join(1975. .1993,1. .19)
XX
SQ   Sequence 1993 BP; 426 A; 455 C; 603 G; 509 T; 0 other;

AF071878  Length: 1993  September 18, 2002 10:52  Type: N  Check: 3211  ..

       1  ttagtattac ccgccgcctg gggcaccggg gcaccgcagc tattggctgc
      51  cttgcggagg tgcccgcccc tagggaggag taaatggcgc cgttaggcgc
     101  ccgttaatct ccggaggatc acactcgtcc gggaaccatc ccgtccaagg
     151  agggctctgg ctgtcgccgt tggtgtttca ctcttaacaa ccctacagac
     201  ggcgaaatcg aattcgtccg ttctctcggg cctgacgaat tctactatgc
     251  catcgttgga cgggaaaagg gtgagcaagg cactccccat ttgcaaggct
     301  actttcattt taaaaataag aagcgactga gcgcgcttaa gaaaatgctg
     351  ccgcgaggtc attttgagcg cgctaaaggg agcgacgcgg ataacgagaa
     401  gtattgcagt aaagaggggg acgtcatact taccctgggc attgtggcga
     451  gagacggtca ccgcgctttc gatggagctg ttgctgccgt gatgtccgga
     501  cccaaaatga aggaagtcgc gcgagagttc ccagatatct acgtcaggca
     551  tgggcggggc ttgcatagcc tctcgctatt ggttggttcc cgcccgcgtg
     601  attttaagac tgaggttgac gtcatttacg ggccaccggg gtgtggcaag
     651  agtcgatggg ccaatgagca gcctgggacc aaatattata aaatgcgcgg
     701  tgaatggtgg gatggatatg atggggaaga tgtcgtcatc ttggacgact
     751  tttatgggtg gctaccttat tgcgagatgc tccgcctctg cgaccgttac
     801  ccacataaag tgccagttaa gggcgctttt gtggagttta cgagcaagag
     851  gatcattatc acgagcaata aggccccgga gacctggtac aaggaggact
     901  gtgacccgaa gccactgttc cggagattca ctcgtgtttg gtggtacaac
     951  attgacaagt tggaacaagt ccggcctgat ttcctcgccc accccatcaa
    1001  tttttgatag tctcggtgat gtttaataaa gttaggcgtc gggccgaagg
    1051  cccgatgccg caggggggga ccccctgccg gagggttcgc agggccgtca
    1101  ggcccgagaa cccgaccagc ccggagggcc tagtctgtat cggggggggg
    1151  gccccggggg gtccccccga cacgacgaac acggtagcga cgaaggcgcc
    1201  aataaacact caaaaaggta tttgctgctt gagtctttat taagtactgg
    1251  gattgttagg ggcaaactga cggaattgaa catatatagt gagcttggtt
    1301  acataagtga tcgtttgttc tggctgaggg aagctgaagc caatgccgta
    1351  gtgcctgact ttcgctcctg ctgcgttggg tcctccttgt agtgggatcc
    1401  agccggttct ggcgctgttt agccacaatg ctgcagactg gttcgctgtg
    1451  gtgaggtcgt ttatcgttat ttgtggtttt ggtctgagga gacgtttgaa
    1501  tcccctgcta acataccatt ttctggcacc gtcgaaaggt gccagtgggt
    1551  cttgtgtttg gtctgcaaca gttttaaatt tacttatcct ggagtcttgg
    1601  attacggccg tgtggccgaa tccgtctcct tgtatggtgt agtgtcccca
    1651  tgtgggcctc atttccattt tagctaactt aatccggtag ttttcgaaat
    1701  tcagtgtttg tgggtttggt gtgtttgtta tgaagtctga caatgcaaag
    1751  gttacaaagt cggagctaaa aattaggttg ccagtactgg tggtttgttt
    1801  ttgaatttgg aatttgaatt ggcgtgtgag tctgagagtg taaaccctat
    1851  tggttgagaa acggcgtctg cggaagtgtc tacgtcgccg gcggtatcgc
    1901  ctgatgtgac gtctgcggta gtatgggcgg gcataccgtc gtctaacctg
    1951  aaatatagcg catgcgtagt tagaggtgcc ccataggcgg cgg