Sequence of DPV Porcine circovirus-1
Porcine circovirus, complete genome.
ACC No: AF071879
Dated: 2000-03-03 | Length: 1758 | CRC: 1990903906
!!NA_SEQUENCE 1.0 ID AF071879 standard; circular DNA; VRL; 1758 BP. XX AC AF071879; XX SV AF071879.1 XX DT 09-SEP-1998 (Rel. 56, Created) DT 03-MAR-2000 (Rel. 62, Last updated, Version 2) XX DE Porcine circovirus, complete genome. XX KW . XX OS porcine circovirus OC Viruses; ssDNA viruses; Circoviridae; Circovirus. XX RN [1] RP 1-1758 RX MEDLINE; 99003925. RA Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W., RA Latimer K.S., Lukert P.D.; RT "Beak and feather disease virus and porcine circovirus genomes: RT intermediates between the geminiviruses and plant circoviruses"; RL Arch. Virol. 143(9):1723-1744(1998). XX RN [2] RP 1-1758 RA Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W., RA Latimer K.S., Lukert P.D.; RT ; RL Submitted (12-JUN-1998) to the EMBL/GenBank/DDBJ databases. RL Clinical Investigation, Dwight D. Eisenhower Army Medical Center, Bldg. RL 332, Fort Gordon, GA 30905-5650, USA XX DR SPTREMBL; O90238; O90238. DR SPTREMBL; O90239; O90239. XX FH Key Location/Qualifiers FH FT source 1. .1758 FT /db_xref="taxon:46221" FT /organism="porcine circovirus" FT CDS 55. .993 FT /codon_start=1 FT /db_xref="SPTREMBL:O90238" FT /note="rolling-circle replication protein homolog; Rep FT protein" FT /gene="V1" FT /product="replication-associated protein" FT /protein_id="AAC34819.1" FT /translation="MPSKKSGPQPHKRWVFTLNNPSEEEKNKIRELPISLFDYFVCGEE FT GLEEGRTPHLQGFANFAKKQTFNKVKWYFGARCHIEKAKGTDQQNKEYCSKEGHILIEC FT GAPRNQGKRSDLSTAVSTLLETGSLVTVAEQFPVTYVRNFRGLAELLKVSGKMQQRDWK FT TAVHVIVGPPGCGKSQWARNFTEPSDTYWKPSRNKWWDGYHGEEVVVLDDFYGWLPWDD FT LLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEWYSSTAVPAVEALYRRITTLQFW FT KTAGEQSTEVPEGRFEAVDPPCALFPYKINY" FT CDS complement(1038. .1730) FT /codon_start=1 FT /db_xref="SPTREMBL:O90239" FT /gene="C1" FT /product="capsid protein" FT /protein_id="AAC34820.1" FT /translation="MTWPRRRYRRRRTRPRSHLGNILRRRPYLAHPAFRNRYRWRRKTG FT IFNSRLSTELVLTIKGGYSQPSWNVNYLKFNIGQFLPPSGGTNPLPLPFQYYRIRKAKY FT EFYPRDPITSNQRGVGSTVVILDANFVTPSTNLAYDPYINYSSRHTIRQPFTYHSRYFT FT PKPELDQTIDWFHPNNKRNQLWLHLNTHTNVEHTGLGYALQNAATAQNYVVRLTIYVQF FT REFILKDL" FT stem_loop join(1747. .1758,1. .21) XX SQ Sequence 1758 BP; 432 A; 344 C; 506 G; 476 T; 0 other; AF071879 Length: 1758 September 18, 2002 10:52 Type: N Check: 187 .. 1 gtagtattac cagcgcactt cggcagcggc agcacctcgg cagcgtcagt 51 gaaaatgcca agcaagaaaa gcggcccgca accccataag aggtgggtgt 101 tcacccttaa taatccttcc gaggaggaga aaaacaaaat acgggagctt 151 ccaatctccc tttttgatta ttttgtttgc ggagaggaag gtttggaaga 201 gggtagaact cctcacctcc aggggtttgc gaattttgct aagaagcaga 251 cttttaacaa ggtgaagtgg tattttggtg cccgctgcca catcgagaaa 301 gcgaaaggaa ccgaccagca gaataaagaa tactgcagta aagaaggtca 351 catacttatc gagtgtggag ctccgcggaa ccaggggaag cgcagcgacc 401 tgtctactgc tgtgagtacc cttttggaga cggggtcttt ggtgactgta 451 gccgagcagt tccctgtaac gtatgtgaga aatttccgcg ggctggctga 501 acttttgaaa gtgagcggga agatgcagca gcgtgattgg aagacagctg 551 tacacgtcat agtgggcccg cccggttgtg ggaagagcca gtgggcccgt 601 aattttactg agcctagcga cacctactgg aagcctagta gaaataagtg 651 gtgggatgga tatcatggag aagaagttgt tgttttggat gatttttatg 701 gctggttacc ttgggatgat ctactgagac tgtgtgaccg gtatccattg 751 actgtagaga ctaaaggcgg tactgttcct tttttggccc gcagtatttt 801 gattaccagc aatcaggccc cccaggaatg gtactcctca actgctgtcc 851 cagctgtaga agctctctat cggaggatta ctactttgca attttggaag 901 actgctggag aacaatccac ggaggtaccc gaaggccgat ttgaagcagt 951 ggacccaccc tgtgcccttt tcccatataa aataaattac tgagtctttt 1001 ttgttatcac atcgtaatgg tttttatttt tatttattta gaggtctttt 1051 aggataaatt ctctgaattg tacataaata gtcagcctta ccacataatt 1101 ttgggctgtg gctgcatttt ggagcgcata gccgaggcct gtgtgctcga 1151 cattggtgtg ggtatttaaa tggagccaca gctggtttct tttattattt 1201 gggtggaacc aatcaattgt ttggtccagc tcaggtttgg gggtgaagta 1251 cctggagtgg taggtaaagg gctgccttat ggtgtggcgg gaggagtagt 1301 taatataggg gtcataggcc aagttggtgg agggggttac aaagttggca 1351 tccaagataa caacagtgga cccaacacct ctttgattag aggtgatggg 1401 gtctctgggg taaaattcat atttagcctt tctaatacgg tagtattgga 1451 aaggtagggg tagggggttg gtgccgcctg agggggggag gaactggccg 1501 atgttgaatt tgaggtagtt aacattccaa gatggctgcg agtatcctcc 1551 ttttatggtg agtaccaatt ctgtagaaag gcgggaattg aagatacccg 1601 tctttcggcg ccatctgtaa cggtttctga aggcggggtg tgccaaatat 1651 ggtcttctcc ggaggatgtt tccaagatgg ctgcgggggc gggtccttct 1701 tctgcggtaa cgcctccttg gccacgtcat cctataaaag tgaaagaagt 1751 gcgctgct