Sequence of DPV Porcine circovirus-1

Porcine circovirus, complete genome.

ACC No: AF071879

Dated: 2000-03-03 | Length: 1758 | CRC: 1990903906

                !!NA_SEQUENCE 1.0
ID   AF071879   standard; circular DNA; VRL; 1758 BP.
XX
AC   AF071879;
XX
SV   AF071879.1
XX
DT   09-SEP-1998 (Rel. 56, Created)
DT   03-MAR-2000 (Rel. 62, Last updated, Version 2)
XX
DE   Porcine circovirus, complete genome.
XX
KW   .
XX
OS   porcine circovirus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1758
RX   MEDLINE; 99003925.
RA   Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W.,
RA   Latimer K.S., Lukert P.D.;
RT   "Beak and feather disease virus and porcine circovirus genomes:
RT   intermediates between the geminiviruses and plant circoviruses";
RL   Arch. Virol. 143(9):1723-1744(1998).
XX
RN   [2]
RP   1-1758
RA   Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W.,
RA   Latimer K.S., Lukert P.D.;
RT   ;
RL   Submitted (12-JUN-1998) to the EMBL/GenBank/DDBJ databases.
RL   Clinical Investigation, Dwight D. Eisenhower Army Medical Center, Bldg.
RL   332, Fort Gordon, GA 30905-5650, USA
XX
DR   SPTREMBL; O90238; O90238.
DR   SPTREMBL; O90239; O90239.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1758
FT                   /db_xref="taxon:46221"
FT                   /organism="porcine circovirus"
FT   CDS             55. .993
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O90238"
FT                   /note="rolling-circle replication protein homolog; Rep
FT                   protein"
FT                   /gene="V1"
FT                   /product="replication-associated protein"
FT                   /protein_id="AAC34819.1"
FT                   /translation="MPSKKSGPQPHKRWVFTLNNPSEEEKNKIRELPISLFDYFVCGEE
FT                   GLEEGRTPHLQGFANFAKKQTFNKVKWYFGARCHIEKAKGTDQQNKEYCSKEGHILIEC
FT                   GAPRNQGKRSDLSTAVSTLLETGSLVTVAEQFPVTYVRNFRGLAELLKVSGKMQQRDWK
FT                   TAVHVIVGPPGCGKSQWARNFTEPSDTYWKPSRNKWWDGYHGEEVVVLDDFYGWLPWDD
FT                   LLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEWYSSTAVPAVEALYRRITTLQFW
FT                   KTAGEQSTEVPEGRFEAVDPPCALFPYKINY"
FT   CDS             complement(1038. .1730)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O90239"
FT                   /gene="C1"
FT                   /product="capsid protein"
FT                   /protein_id="AAC34820.1"
FT                   /translation="MTWPRRRYRRRRTRPRSHLGNILRRRPYLAHPAFRNRYRWRRKTG
FT                   IFNSRLSTELVLTIKGGYSQPSWNVNYLKFNIGQFLPPSGGTNPLPLPFQYYRIRKAKY
FT                   EFYPRDPITSNQRGVGSTVVILDANFVTPSTNLAYDPYINYSSRHTIRQPFTYHSRYFT
FT                   PKPELDQTIDWFHPNNKRNQLWLHLNTHTNVEHTGLGYALQNAATAQNYVVRLTIYVQF
FT                   REFILKDL"
FT   stem_loop       join(1747. .1758,1. .21)
XX
SQ   Sequence 1758 BP; 432 A; 344 C; 506 G; 476 T; 0 other;

AF071879  Length: 1758  September 18, 2002 10:52  Type: N  Check: 187  ..

       1  gtagtattac cagcgcactt cggcagcggc agcacctcgg cagcgtcagt
      51  gaaaatgcca agcaagaaaa gcggcccgca accccataag aggtgggtgt
     101  tcacccttaa taatccttcc gaggaggaga aaaacaaaat acgggagctt
     151  ccaatctccc tttttgatta ttttgtttgc ggagaggaag gtttggaaga
     201  gggtagaact cctcacctcc aggggtttgc gaattttgct aagaagcaga
     251  cttttaacaa ggtgaagtgg tattttggtg cccgctgcca catcgagaaa
     301  gcgaaaggaa ccgaccagca gaataaagaa tactgcagta aagaaggtca
     351  catacttatc gagtgtggag ctccgcggaa ccaggggaag cgcagcgacc
     401  tgtctactgc tgtgagtacc cttttggaga cggggtcttt ggtgactgta
     451  gccgagcagt tccctgtaac gtatgtgaga aatttccgcg ggctggctga
     501  acttttgaaa gtgagcggga agatgcagca gcgtgattgg aagacagctg
     551  tacacgtcat agtgggcccg cccggttgtg ggaagagcca gtgggcccgt
     601  aattttactg agcctagcga cacctactgg aagcctagta gaaataagtg
     651  gtgggatgga tatcatggag aagaagttgt tgttttggat gatttttatg
     701  gctggttacc ttgggatgat ctactgagac tgtgtgaccg gtatccattg
     751  actgtagaga ctaaaggcgg tactgttcct tttttggccc gcagtatttt
     801  gattaccagc aatcaggccc cccaggaatg gtactcctca actgctgtcc
     851  cagctgtaga agctctctat cggaggatta ctactttgca attttggaag
     901  actgctggag aacaatccac ggaggtaccc gaaggccgat ttgaagcagt
     951  ggacccaccc tgtgcccttt tcccatataa aataaattac tgagtctttt
    1001  ttgttatcac atcgtaatgg tttttatttt tatttattta gaggtctttt
    1051  aggataaatt ctctgaattg tacataaata gtcagcctta ccacataatt
    1101  ttgggctgtg gctgcatttt ggagcgcata gccgaggcct gtgtgctcga
    1151  cattggtgtg ggtatttaaa tggagccaca gctggtttct tttattattt
    1201  gggtggaacc aatcaattgt ttggtccagc tcaggtttgg gggtgaagta
    1251  cctggagtgg taggtaaagg gctgccttat ggtgtggcgg gaggagtagt
    1301  taatataggg gtcataggcc aagttggtgg agggggttac aaagttggca
    1351  tccaagataa caacagtgga cccaacacct ctttgattag aggtgatggg
    1401  gtctctgggg taaaattcat atttagcctt tctaatacgg tagtattgga
    1451  aaggtagggg tagggggttg gtgccgcctg agggggggag gaactggccg
    1501  atgttgaatt tgaggtagtt aacattccaa gatggctgcg agtatcctcc
    1551  ttttatggtg agtaccaatt ctgtagaaag gcgggaattg aagatacccg
    1601  tctttcggcg ccatctgtaa cggtttctga aggcggggtg tgccaaatat
    1651  ggtcttctcc ggaggatgtt tccaagatgg ctgcgggggc gggtccttct
    1701  tctgcggtaa cgcctccttg gccacgtcat cctataaaag tgaaagaagt
    1751  gcgctgct