Sequence of DPV Rice tungro bacilliform virus
Rice tungro bacilliform virus Serdang strain, complete genome.
ACC No: AF076470
Dated: 2001-06-08 | Length: 8016 | CRC: -643242757
!!NA_SEQUENCE 1.0
ID AF076470 standard; circular DNA; VRL; 8016 BP.
XX
AC AF076470;
XX
SV AF076470.1
XX
DT 29-JUL-1998 (Rel. 56, Created)
DT 08-JUN-2001 (Rel. 68, Last updated, Version 3)
XX
DE Rice tungro bacilliform virus Serdang strain, complete genome.
XX
KW .
XX
OS Rice tungro bacilliform virus
OC Viruses; Retroid viruses.
XX
RN [1]
RP 1-8016
RX MEDLINE; 99119505.
RX PUBMED; 9918890.
RA Marmey P., Bothner B., Jacquot E., de Kochko A., Ong C.A., Yot P.,
RA Siuzdak G., Beachy R.N., Fauquet C.M.;
RT "Rice tungro bacilliform virus open reading frame 3 encodes a single 37-kDa
RT coat protein";
RL Virology 253(2):319-326(1999).
XX
RN [2]
RP 1-8016
RA de Kochko A., Marmey P., Brizard J.P., Beachy R.N., Fauquet C.;
RT ;
RL Submitted (02-JUL-1998) to the EMBL/GenBank/DDBJ databases.
RL Cell Biology, ILTAB/ORSTOM/TSRI, 10550 N. Torrey Pines Rd., San Diego, CA
RL 92037, USA
XX
DR SPTREMBL; O90300; O90300.
DR SPTREMBL; O90301; O90301.
DR SPTREMBL; O90302; O90302.
DR SPTREMBL; O90303; O90303.
XX
FH Key Location/Qualifiers
FH
FT source 1. .8016
FT /country="Malaysia"
FT /db_xref="taxon:10654"
FT /organism="Rice tungro bacilliform virus"
FT /strain="Serdang"
FT CDS 665. .997
FT /codon_start=1
FT /db_xref="SPTREMBL:O90300"
FT /note="ORF2"
FT /product="DNA binding protein"
FT /protein_id="AAC27710.1"
FT /translation="MSADYPTFKEALEKFKNLESDTAAKDKFNWVFTLENIKTTADINL
FT ASKGLVQLYALQEIDKTDDILTTQVSKLPTTSGISSAGAIVPAGSNTQGQYKAPPKKGI
FT KRKYPA"
FT CDS 994. .6021
FT /codon_start=1
FT /db_xref="SPTREMBL:O90301"
FT /note="encodes a polyprotein which is cleaved by aspartic
FT proteinase to give a putative movement protein, a coat
FT protein, a proteinase, and a replicase which has a reverse
FT transcriptase activity, a DNA polymerase DNA dependant
FT activity, and a RNAse H activity; ORF3"
FT /product="polyprotein"
FT /protein_id="AAC27711.1"
FT /translation="MNIRPFNGTSRTINQDSTSESNIKKGKNSTKRELIEEVDVNQDVE
FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN
FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMSYDDSFGKAREASIGSIEMDMNAGCG
FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD
FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNQENTSRVPTKALIYQNLHGGESLR
FT FSNYKQTRMHDLTENNSDEDEDLKILGEQLNIKMARFYTMETPEEELRAVIQQLEREKQ
FT AMVEKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFERLGLTGWEDLDQDSLE
FT TKEITEWENPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE
FT KAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNFERI
FT GGSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI
FT TGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR
FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDIIYVERLFDRLPEAVGKVVKADFVKDG
FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKRVTN
FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASIIEGLDEDIVSIAS
FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKICET
FT QYCKTCSDQLAIEVREIKKPTKEEEMIEDLKLNVKNLEFRVTILEHKAEMQHIQDKFEA
FT MQIRNKPEITEISEATTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALID
FT SGSTHNIICPTLIPASWINSTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIK
FT YKLGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFAR
FT KHGGRPPLFSNIPETYNKIPPLHSYQPIIGYKNEIGDQSLITMIKELEALGFIGDDITK
FT NRTTWVCDFKIINPDINITCATIPYTPADKEIFEKQIKELLDNKLIKKASPTCRHRTAA
FT FIVRNHAEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGF
FT HHMKLKEDFKDWTTFTCSEGLFTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDI
FT LIASSNEQEHIKHLKIFFNRVKEVGCVLSKRKSKMFLKEVEYLGVEIKEGKISLQPHIV
FT EKIKRFDKSKLSTLKGLQAYLGLLNYARSYIKDLSKLVGPLYKKTGKSGQRSFNKEDWN
FT IIFKIEREISKIKPLERPKESDYIIIETDASEEGWGAVLLCKPDKYASKDTEKIAGYAS
FT GNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSKTR
FT WIKLRDNLLKDGYKPTFEHIKGTKNFLPNFLSREGDFILKCLQNPDSIESHSIDSQESV
FT PLYIDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA"
FT CDS 6042. .7211
FT /codon_start=1
FT /db_xref="SPTREMBL:O90302"
FT /note="similar to the caulimovirus transactivator factor
FT inclusion body protein; ORF4"
FT /product="unknown"
FT /protein_id="AAC27712.1"
FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHVSRGLLDHL
FT FTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLNDQVSTLQKQNSELRARIATN
FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD
FT CEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIEDNTTESLLSLSQKKGEDLLQKGVVIFN
FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE
FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVEED
FT KEEVVYISKNTKDYKVTKEHAWAWPEHDGDTMSCSTSIGEEWIHRMANA"
FT CDS join(8016,1. .668)
FT /codon_start=1
FT /db_xref="SPTREMBL:O90303"
FT /note="a fragment of this polypeptide is associated with
FT the ORF4 translation product after splicing of the mRNA;
FT ORF1; leaky stop codon; mechanism unknown"
FT /transl_except=(pos:66. .68,aa:OTHER)
FT /product="unknown"
FT /protein_id="AAC27709.2"
FT /translation="MVSERCSNFKGKHEYNLVELITXVPKRNLTSQNIESRYEKLEFLD
FT LAVWGKEKKQKYCLSTDNISFYWYFDTSKTSESERKHTFHSDNKQLNSIGDLIIKHSEK
FT TKNIKEEIRKYSQFLDKILDLKPSKNQIEKLLEIQNIIHKNFDYIKEQNAQLEKSLRKP
FT VKLEDSINTLLVEIQQARPKEVELRTLKIAEQNSKAIEKFEQEIKDLREILEYLKHQST
FT "
XX
SQ Sequence 8016 BP; 3285 A; 1220 C; 1460 G; 2051 T; 0 other;
AF076470 Length: 8016 December 21, 2001 14:51 Type: N Check: 433 ..
1 tggtatcaga gcgatgttcg aactttaagg gaaaacatga atacaatcta
51 gtcgaactaa ttacataagt tccaaagagg aatcttactt ctcaaaatat
101 tgagtctcgt tacgaaaaac ttgaattctt agatttagca gtctggggaa
151 aagagaaaaa acaaaaatat tgtttatcta ctgataatat tagtttttat
201 tggtattttg ataccagtaa aactagtgag tcggaaagaa agcatacctt
251 tcattctgat aataagcaac ttaatagtat tggagatctt attattaagc
301 attctgaaaa aaccaaaaat attaaggaag aaattagaaa atatagccag
351 ttcctagata agatattaga tttaaaacct tctaaaaacc aaattgaaaa
401 attattggaa atccaaaata taatccacaa aaactttgat tatatcaaag
451 aacaaaacgc tcagctagaa aaatccttaa gaaagccagt taagctagaa
501 gactctatta atactttact agtagaaata caacaagcta gacctaagga
551 agtagaatta agaactctta aaatagcaga acaaaactct aaggcaatag
601 aaaaatttga acaggaaatt aaggacctaa gagaaatctt agaatacctt
651 aagcaccaat ctacatgagc gctgattatc caactttcaa ggaagccctt
701 gaaaagttta aaaacttaga atcagataca gccgctaaag ataagtttaa
751 ttgggtattt actctagaaa atataaaaac aactgcagac ataaatctag
801 catctaaagg tttagtacaa ctatacgctt tacaagaaat tgataaaaca
851 gatgatattc ttacaaccca agttagtaag ttacctacaa ctagtggaat
901 tagttcagca ggagctatag tacctgcagg aagtaacacc caaggtcaat
951 ataaagcacc acctaagaag ggaattaaaa gaaaatatcc agcatgaata
1001 taagaccatt taatggtact tctagaacta taaaccaaga ttcaacctct
1051 gaatctaata ttaaaaaagg aaaaaattca acaaaaagag aattaataga
1101 agaagtagac gttaatcaag atgtagaaaa ctttgattgg aaaaaattat
1151 cagggattaa acctaataag ctatatgaga aaaattggca agaaaaggtt
1201 aaattaaaac aacaatctat agtttcagca tataaagaag aagccattag
1251 cgtaacgcat aatgcatata ctactacttt atttcctcaa gaagtaatta
1301 aaaacgttaa aaatcaggga aaactttatt accatatagg catgatggcc
1351 ataggagtta aaggacttca tagaagaaaa ataggaacta aagtcatgat
1401 aatgtcttat gatgatagtt tcggtaaagc tagagaagct agcattggat
1451 caatagaaat ggatatgaat gcaggttgcg gagtattcta ctcctgtccc
1501 gactttgcaa aatatattaa agatttatca catcttaaga taggaataca
1551 aaccctagga tatgaaaatt atgaaggaaa aaacctttca gtagcaatca
1601 aaactatagg gagattgacc acaaatatac agtcaaaata taagataaat
1651 gtgaaagata ttgtagaaca aatatcgtca caaggaatta ttatggtagc
1701 acccatggaa atagattcat cacacttgga tgggaatgaa tgggatctta
1751 gtaaattctt aaatcaagaa aacacaagta gagtcccgac caaagcccta
1801 atatatcaga atttgcatgg aggagaatct ttaagatttt caaactataa
1851 gcaaactaga atgcatgatc tgactgaaaa taattcagac gaagatgaag
1901 atttaaaaat cttaggagaa caactaaaca tcaaaatggc aagattctat
1951 acaatggaaa cgccagaaga agaattaaga gcagtaatcc aacaattaga
2001 aagagaaaaa caagccatgg tagaaaaatt agaagctaag atgaaagaat
2051 catctaaaat ggcaatagta gaagataatt ttaacccaaa caacgaatat
2101 ctagaagata catattctga gtacgaagat ctagaatttg aaaggttagg
2151 attaactgga tgggaagatt tagaccagga ctctttagaa accaaagaaa
2201 taactgaatg ggaaaatcct aatcaggtac tccatagaga aattagagca
2251 tataaatcag tatcagaaca aatagaagat atatttggag aactattaaa
2301 agaacatgga aactacgata tggcccttaa aaacctagaa gaaaaatatg
2351 atttagataa aatagaaaag gccaaatcta tagaagaaat agctaagtca
2401 tccacatcat cagaaataag gccaaccaaa cgacctaaag aagaacaaac
2451 agcttatgaa gatgatatga gggatgattg gaaaagaaaa gaattaacag
2501 taaatcccat agaagcctca aaggatagaa actttgaaag aataggagga
2551 tcctataaga aaaactttta tcctagtagg agtgaaatat taaacttaga
2601 taacgttccc ccacaatttt actatgacca attagtaacc tgggaaggaa
2651 tagtaaaaaa tgaatgggaa gcacgaaaaa aggatggaat ggatatgtgg
2701 tcttggatgg acggtagaat aacaggatta gttctatatt tagtccaaga
2751 ttggatttct aaaaatcaag cagcctacaa tgatataaaa tctagaggag
2801 atagacctga aaactttgtt aaaatggtaa aagataggtt cttaatagaa
2851 gatcctacag atgaaaggag aacggcacta caaaggttag cacaaagaga
2901 attagaagcc ttaaattgcg aagatcctac caaaattcaa ccatttatgg
2951 ctgaatatct taagaaagct tcagaagcta agaaaggatt tgatataatt
3001 tacgtagaaa gactcttcga tagattaccc gaggcagtag gaaaggtagt
3051 aaaagccgac tttgtcaaag atggtaattc ttatgaagca ggaataggaa
3101 tagctgtttc atatatatct acatggatga gagcaaaatg catcaaagaa
3151 acagaagcta aaactcaaaa gaaagcatca ctagcatttt gtagatccat
3201 atataccata ggagattata agaaacgaaa aattttaaaa agagtcacaa
3251 actataataa aaatagaaga aaaaactatg ttagaagacc gagtatcaag
3301 aaaaaatgta gatgttatat ctgccaggat gaaaatcatc tagctaatag
3351 atgccctaga agatatacca atcaggctag agcaagtata atagaaggat
3401 tagacgaaga tatagtatct atagcatcag atgatgaaga tatcgaaaat
3451 ttcctcgaaa taatagaact tgatgaattt atagcacatt ctagtcaaga
3501 acatgaacat acatgggaaa ttggaggaaa gaaagataag gtatgtgaaa
3551 tatgcagtta ttttacagat tataataaaa ctgttagctg taaaatctgt
3601 gaaactcaat actgtaaaac atgttctgat caactagcaa tagaagtaag
3651 agaaattaaa aaacccacaa aagaagaaga aatgatagaa gatctaaaat
3701 taaatgttaa aaatctagaa tttagagtta ctatcctaga acataaagca
3751 gaaatgcaac atatacaaga taaatttgaa gcaatgcaaa ttagaaacaa
3801 accagaaata acagaaatat cagaagcaac gacttcatta gctatgagag
3851 caaatgaatc aaactatata aaaacatcaa ttaataaaac cgccggttgt
3901 tatgtcgaaa caaaaatctc atttaataat gaaaatagaa tcataacagc
3951 actaatagat tccggttcaa cacataatat aatatgtcca acattaatac
4001 cagcatcttg gattaatagc acgcatagag aaattataat gtttgccgta
4051 gataatagca aatacaacct gaatcaagaa ttaatagatg atataaaact
4101 acaattccaa gaagttgatg aaacttttgg aataaaatat aaattaggac
4151 aaacctatgt agcacctaaa ccaacaaaaa ccttcataat aggacatcga
4201 ttcctcacaa atgaaaatgg tagtgttaca attcataaag actatataac
4251 tatacaaaaa actacaggca tatacccaac agccaggcat gagcttaaat
4301 cagagtttgc gcgaaagcat ggtggacgcc cgccattatt ttcaaacatt
4351 cctgaaacct acaataagat tcctcctcta cattcatatc aaccgataat
4401 aggatataag aatgaaatag gagatcaaag tttaataact atgataaaag
4451 agttagaagc acttggattt ataggagatg acatcacaaa aaatagaaca
4501 acatgggtat gtgatttcaa aatcataaat ccagatatta acatcacttg
4551 tgcaacaatt ccatatacac cagcagataa agaaatattt gagaagcaga
4601 taaaagaatt actggataat aagctaataa agaaagcaag tccaacttgt
4651 agacatagaa cagctgcatt catagtaaga aatcatgctg aagaagtagc
4701 acaaaaacca aggatagttt ataattataa aaggttaaat gataatatgc
4751 atacagatcc gtttaatata cctcataaga tttctatgat taatcttata
4801 cagaaagcta atatattctc taagtttgat ctaaaggcag gatttcatca
4851 tatgaaactt aaagaagatt tcaaagattg gacaactttt acttgttctg
4901 aaggattatt tacatggaat gtctgtccat ttggtatagc taatgctcct
4951 tgtgcatttc aaagatttat gcaggaatcc ttcggagatt taaaatttgc
5001 attattatat attgatgata tactcattgc atcaagcaat gaacaagaac
5051 atattaagca tctaaagata ttcttcaata gagttaaaga agtaggatgc
5101 gtgcttagca agagaaaatc aaaaatgttc ctaaaagaag tagaatattt
5151 aggagttgag ataaaagaag gaaagatcag ccttcagcca catatagtag
5201 aaaaaatcaa aagattcgat aaaagcaagt tgagtaccct aaaaggccta
5251 caagcatatc taggattact caattatgct agaagctaca ttaaagactt
5301 atcaaagcta gtaggaccac tatataaaaa gactggaaag agtgggcaga
5351 gaagctttaa taaagaagat tggaatataa tctttaaaat agaaagagag
5401 atatcaaaga taaagccact agagaggcct aaagaatcag actacataat
5451 aattgagacc gatgcatcag aagaaggttg gggagcagtc ttactctgca
5501 aaccagataa atatgctagt aaagatactg aaaaaatagc aggctatgca
5551 tcaggaaact ttggagaaaa gaagacttgg actagtttag attatgaaat
5601 agaagctata aatgaagcgc taaacaagtt ccagatatat ttagacaaag
5651 attttacaat cagaacagac tgtgaagcaa tagtaaaagg aataaaaaca
5701 gaagattata agaagagatc taagactaga tggatcaagt taagagataa
5751 ccttctgaaa gatggttata agcctacctt tgagcatatc aaaggaacaa
5801 aaaacttttt accaaacttc ttatcccgcg agggagattt tattttaaaa
5851 tgtcttcaaa atcccgattc tattgaatca cattctatag attcgcaaga
5901 atcagttcca ctatatattg attcgaaaga atcacattct atagagtctg
5951 atgactcaat tccactatac agggacaagc ttcttcctct agtcgaaagg
6001 ctaaaggaga aaagtgctta accaagattg gaggcatcac catgaatata
6051 gagtacccgt actcaatcca cataatagac aaaaacaagg ttccgatcta
6101 cgatcaagga aatctcttcc acactgagaa gtctgcaaga ctttcacacg
6151 tgtccagagg tttgctagat catctcttta ctttttcatc tgataatact
6201 gagcgagtta ggaagctcca catattagcc gattatcttt acctattaga
6251 aagtgagaga gagtcatata aaaatgagtg gattagcctg aatgatcagg
6301 ttagtactct acaaaaacaa aatagtgagc tgagagctag gatagccaca
6351 aataaagaaa taatagaggg actgagagag ccagttaaaa agccaatata
6401 cacaacccaa gataaagaga ggctccgtgt cttcttttgc gaagaaagaa
6451 gcatggaata tatatattat catataaaaa gactagctca gcagagctat
6501 tactcccatt taaataaatt acagaaggat tgcgaaccct ttcgaggggt
6551 ttatatgtct ttcttaacta atgttaaatt cctagtacta tgtgaagctg
6601 gatactggac cgttccagat atagaagaca atactacaga gtctttatta
6651 agtttatctc agaagaaagg agaagattta ctacaaaaag gagtggtaat
6701 atttaatgag cttgaaggag gttatcaact ttctccaaga ttcattggag
6751 acctttatgc tcatggcttt attaaacaaa taaacttcac aaccaaggtt
6801 cctgaaggat taccgccaat catagcggaa aaacttcaag actataagtt
6851 ccctggatca aacacagttt taatagaacg agagattcct cgctggaatt
6901 ttaatgaaat gaagagagaa acacagatga ggaccaactt atatatcttc
6951 aagaattatc gttgtttcta tggctattca ccattaaggc catatgaacc
7001 cataactcct gaagaatttg ggtttgatta ctatagctgg gaaaatatgg
7051 ttgaagaaga caaggaggaa gtagtataca tctccaagaa tactaaggat
7101 tataaggtca ccaaagagca tgcatgggct tggccagaac atgacggaga
7151 tacaatgtcc tgcagtacat caataggaga agaatggatc catcgtatgg
7201 ccaatgctta aagtagcttt aactaaagca actttgggca ggaatcaata
7251 aagaaggacc agaagatata aagcgggaac atcttcacat gctacctcgt
7301 ggcaagcatc tttgctttag catctttgct ttacaattat tgtaagagtg
7351 tgtaaagacc agtgtgccct taggctccag tatataagga gcaccaaggt
7401 attgtaataa gcattcgaaa tcgatcaagc aagcgagagc caaaacttct
7451 aagagagcaa gagaggagct tatcctctca cccctcttca agaagcaaag
7501 gcgatcaatg gctcaggtca gtgagtagtc gtctttaagg ttcctctagg
7551 aacctctgtg taatatgttt gtacttatga ttgtatttct caaaaaccta
7601 tccgctgcat gaataaagct cttatattta tcctacaccc ttgtgataaa
7651 atatgaagtc atactcgttc taagattaaa tgttctaaga atacttcgaa
7701 gcattgaaaa gggggctaaa gggggaaaaa gtaccgtcag gcccgtgtta
7751 tggcaaggga agaagtacca tgaataccct atagatgtta gaaggaaggt
7801 aagaactaag tatcttatga acaatgagta gctgatttct gattatcagt
7851 aacaagtatc gttacaatct ataagctttg aaagatctat tagtgtggat
7901 accaaaaggc tgtcgtggtt cgcccagtcg acggatgagg tcataaacga
7951 agcactagtg ggtaactaag aggcttaggg atgagctacg agaaaagtta
8001 ggggggtgcc tagaaa