Sequence of DPV Bovine circovirus

Bovine circovirus, complete genome.

ACC No: AF109397

Dated: 2000-03-03 | Length: 1768 | CRC: 256445858

                !!NA_SEQUENCE 1.0
ID   AF109397   standard; circular DNA; VRL; 1768 BP.
XX
AC   AF109397;
XX
SV   AF109397.1
XX
DT   18-DEC-1998 (Rel. 58, Created)
DT   03-MAR-2000 (Rel. 62, Last updated, Version 4)
XX
DE   Bovine circovirus, complete genome.
XX
KW   .
XX
OS   bovine circovirus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1768
RA   Hamel A.L., Nayar G.P.S.;
RT   "Nucleotide sequence of a circovirus detected in cattle with various
RT   clinical syndromes";
RL   Unpublished.
XX
RN   [2]
RP   1-1768
RA   Hamel A.L., Nayar G.P.S.;
RT   ;
RL   Submitted (27-NOV-1998) to the EMBL/GenBank/DDBJ databases.
RL   Virology Laboratory, Veterinary Diagnostic Laboratory, Manitoba
RL   Agriculture, 545 University Crescent, Winnipeg, Manitoba R3T 5S6, Canada
XX
RN   [3]
RC   Sequence update by submitter
RP   1-1768
RA   Hamel A.L., Nayar G.P.S.;
RT   ;
RL   Submitted (02-FEB-1999) to the EMBL/GenBank/DDBJ databases.
RL   Virology Laboratory, Veterinary Diagnostic Laboratory, Manitoba
RL   Agriculture, 545 University Crescent, Winnipeg, Manitoba R3T 5S6, Canada
XX
DR   SPTREMBL; O56124; O56124.
DR   SPTREMBL; O56125; O56125.
DR   SPTREMBL; O56126; O56126.
DR   SPTREMBL; O56130; O56130.
DR   SPTREMBL; O56131; O56131.
DR   SPTREMBL; O93201; O93201.
DR   SPTREMBL; O93202; O93202.
DR   SPTREMBL; Q9YIT3; Q9YIT3.
DR   SPTREMBL; Q9YIU3; Q9YIU3.
DR   SPTREMBL; Q9YJ73; Q9YJ73.
DR   SPTREMBL; Q9YR17; Q9YR17.
XX
CC   On Feb 2, 1999 this sequence version replaced gi:4028609.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1768
FT                   /db_xref="taxon:85542"
FT                   /note="BCV sequence was obtained from several overlapping
FT                   PCRs using DNA extracted from various tissues from cattle;
FT                   similar to Porcine circovirus sequence presented in GenBank
FT                   Accession Number AF027217"
FT                   /virion
FT                   /organism="bovine circovirus"
FT   repeat_region   13. .35
FT                   /rpt_unit=13. .18
FT                   /rpt_type=TANDEM
FT   CDS             51. .995
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9YJ73"
FT                   /note="ORF-1; similar to Porcine circovirus ORF1 encoded by
FT                   the sequence presented in GenBank Accession Number
FT                   AF027217."
FT                   /product="putative Rep and coat protein"
FT                   /protein_id="AAD11928.1"
FT                   /translation="MPSKKNGRSGPQPHKRWVFTLNNPSEDERKKIRELPISLFDYFIV
FT                   GEEGNEEGRTPHLQGFANFVKKQTFNKVKWYLGARCHIEKAKGTDQQNKEYCSKEGNLL
FT                   IECGAPRSQGQRSDLSTAVSTLLESGSLVTVAEQHPVTFVRNFRGLAELLKVSGKMQKR
FT                   DWKTNVHVIVGPPGCGKSKWAANFADPETTYWKPPRNKWWDGYHGEEVVVIDDFYGWLP
FT                   WDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEWYSSTAVPAVEALYRRITSL
FT                   VFWKNATEQSTEEGGQFVTLSPPCPEFPYEINY"
FT   polyA_signal    327. .332
FT   CDS             complement(357. .671)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O56124"
FT                   /note="similar to Porcine circovirus ORF-3 encoded by the
FT                   sequence presented in GenBank Accession Number AF027217."
FT                   /product="ORF-3"
FT                   /protein_id="AAD11930.1"
FT                   /translation="MVTIPPLVSRWFPVCGFRVCKISSPFAFTTPRWPHNDVYIGLPIT
FT                   LLHFPAHFQKFSQPAEISDKRYRVLLCNGHQTPALQQGTHSSRQVTPLSLRSRSSTFNK
FT                   "
FT   CDS             complement(386. .565)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O56125"
FT                   /note="similar to Porcine circovirus ORF-4 encoded by the
FT                   sequence presented in GenBank Accession Number AF027217."
FT                   /product="ORF-4"
FT                   /protein_id="AAD11931.1"
FT                   /translation="MTCTLVFQSRFCIFPLTFKSSASPRKFLTNVTGCCSATVTRLPLS
FT                   NKVLTAVDRSLRCP"
FT   CDS             553. .732
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9YIU3"
FT                   /product="ORF-12"
FT                   /protein_id="AAD11927.1"
FT                   /translation="MYTSLWGHLGVVKANGLLILQTRKPHTGNHLETSGGMVTMVKKWL
FT                   LLMTFMAGCRGMIY"
FT   CDS             complement(688. .753)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O56126"
FT                   /product="ORF-8"
FT                   /protein_id="AAD11935.1"
FT                   /translation="MDIDHTVSVDHPTAASHKSHQ"
FT   polyA_signal    983. .988
FT   CDS             complement(989. .1033)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O93202"
FT                   /product="ORF-11"
FT                   /protein_id="AAD11937.1"
FT                   /translation="MNNKNHYEVIKKTQ"
FT   CDS             1016. .1177
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O93201"
FT                   /product="ORF-5"
FT                   /protein_id="AAD11932.1"
FT                   /translation="MVFIIHLGFKWGVFKIKFSELYIHGYTDIVVLVVFTVFERSAEAY
FT                   VVHISRGL"
FT   polyA_signal    complement(1022. .1027)
FT   CDS             complement(1256. .1735)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9YR17"
FT                   /note="similar to Porcine circovirus ORF-2 encoded by the
FT                   sequence presented in GenBank Accession Number AF027217."
FT                   /product="ORF-2"
FT                   /protein_id="AAD11929.1"
FT                   /translation="MTYPRRRYRRRRTRPRSHLGQILRRRPWLVHPRHRYRWRRKNGIF
FT                   NTRLSRTFGYTVKATTVRTPSWAVDMMRFNIDDFVPPGGGTNKISIPFEYYRIRKVKVE
FT                   FWPCSPITQGDRGVGSTAVILDDNFVTKATALTYDPYVNYSSRHTIPQPFSYHSR"
FT   CDS             complement(1522. .1611)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O56130"
FT                   /product="ORF-6"
FT                   /protein_id="AAD11933.1"
FT                   /translation="MASSTPASPAPSDILSRLPQSERPPGRWT"
FT   CDS             1524. .1631
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O56131"
FT                   /product="ORF-10"
FT                   /protein_id="AAD11936.1"
FT                   /translation="MSTAQEGVLTVVALTVYPKVRERRVLKMPFFLLQR"
FT   CDS             1682. .1741
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9YIT3"
FT                   /product="ORF-7"
FT                   /protein_id="AAD11934.1"
FT                   /translation="MAAGAGPSSAVTPPWIRHS"
FT   stem_loop       join(1750. .1768,1. .13)
FT   rep_origin      join(1762. .1768,1. .2)
FT                   /note="putative; similar to the nonanucleotide motif of
FT                   Porcine circovirus presented in GenBank Accession Numbers
FT                   AF027217 and U49186"
XX
SQ   Sequence 1768 BP; 452 A; 362 C; 493 G; 461 T; 0 other;

AF109397  Length: 1768  September 18, 2002 10:52  Type: N  Check: 4617  ..

       1  accagcgcac ttcggcagcg gcagcacctc ggcagcacct cagcagcaac
      51  atgcccagca agaagaatgg aagaagcgga ccccaaccac ataaaaggtg
     101  ggtgttcacg ctgaataatc cttccgaaga cgagcgcaag aaaatacggg
     151  agctcccaat ctccctattt gattatttta ttgttggcga ggagggtaat
     201  gaggaaggac gaacacctca cctccagggg ttcgctaatt ttgtgaagaa
     251  gcaaactttt aataaagtga agtggtattt gggtgcccgc tgccacatcg
     301  agaaagccaa aggaactgat cagcagaata aagaatattg cagtaaagaa
     351  ggcaacttac ttattgaatg tggagctcct cgatctcaag gacaacggag
     401  tgacctgtct actgctgtga gtaccttgtt ggagagcggg agtctggtga
     451  ccgttgcaga gcagcaccct gtaacgtttg tcagaaattt ccgcgggctg
     501  gctgaacttt tgaaagtgag cgggaaaatg cagaagcgtg attggaagac
     551  caatgtacac gtcattgtgg ggccacctgg gtgtggtaaa agcaaatggg
     601  ctgctaattt tgcagacccg gaaaccacat actggaaacc acctagaaac
     651  aagtggtggg atggttacca tggtgaagaa gtggttgtta ttgatgactt
     701  ttatggctgg ctgccgtggg atgatctact gagactgtgt gatcgatatc
     751  cattgactgt agagactaaa ggtggaactg tacctttttt ggcccgcagt
     801  attctgatta ccagcaatca gaccccgttg gaatggtact cctcaactgc
     851  tgtcccagct gtagaagctc tctatcggag gattacttcc ttggtatttt
     901  ggaagaatgc tacagaacaa tccacggagg aagggggcca gttcgtcacc
     951  ctttcccccc catgccctga atttccatat gaaataaatt actgagtctt
    1001  ttttatcact tcgtaatggt ttttattatt catttagggt ttaagtgggg
    1051  ggtctttaag attaaattct ctgaattgta catacatggt tacacggata
    1101  ttgtagtcct ggtcgtattt actgttttcg aacgcagtgc cgaggcctac
    1151  gtggtccaca tttctagagg tttgtagcct cagccaaagc tgattccttt
    1201  tgttatttgg ttggaagtaa tcaatagtgg agtcaagaac aggtttgggt
    1251  gtgaattaac gggagtggta ggagaagggt tgggggattg tatggcggga
    1301  ggagtagttt acatatgggt cataggttag ggctgtggcc tttgttacaa
    1351  agttatcatc tagaataaca gcagtggagc ccactcccct atcaccctgg
    1401  gtgatggggg agcagggcca gaattcaacc ttaacctttc ttattctgta
    1451  gtattcaaag ggtatagaga ttttgttggt cccccctccc gggggaacaa
    1501  agtcgtcaat attaaatctc atcatgtcca ccgcccagga gggcgttctg
    1551  actgtggtag ccttgacagt atatccgaag gtgcgggaga ggcgggtgtt
    1601  gaagatgcca tttttccttc tccaacggta gcggtggcgg gggtggacga
    1651  gccaggggcg gcggcggagg atctggccaa gatggctgcg ggggcgggtc
    1701  cttcttctgc ggtaacgcct ccttggatac gtcatagctg aaaacgaaag
    1751  aagtgcgctg taagtatt