Sequence of DPV Bovine circovirus
Bovine circovirus, complete genome.
ACC No: AF109397
Dated: 2000-03-03 | Length: 1768 | CRC: 256445858
!!NA_SEQUENCE 1.0 ID AF109397 standard; circular DNA; VRL; 1768 BP. XX AC AF109397; XX SV AF109397.1 XX DT 18-DEC-1998 (Rel. 58, Created) DT 03-MAR-2000 (Rel. 62, Last updated, Version 4) XX DE Bovine circovirus, complete genome. XX KW . XX OS bovine circovirus OC Viruses; ssDNA viruses; Circoviridae; Circovirus. XX RN [1] RP 1-1768 RA Hamel A.L., Nayar G.P.S.; RT "Nucleotide sequence of a circovirus detected in cattle with various RT clinical syndromes"; RL Unpublished. XX RN [2] RP 1-1768 RA Hamel A.L., Nayar G.P.S.; RT ; RL Submitted (27-NOV-1998) to the EMBL/GenBank/DDBJ databases. RL Virology Laboratory, Veterinary Diagnostic Laboratory, Manitoba RL Agriculture, 545 University Crescent, Winnipeg, Manitoba R3T 5S6, Canada XX RN [3] RC Sequence update by submitter RP 1-1768 RA Hamel A.L., Nayar G.P.S.; RT ; RL Submitted (02-FEB-1999) to the EMBL/GenBank/DDBJ databases. RL Virology Laboratory, Veterinary Diagnostic Laboratory, Manitoba RL Agriculture, 545 University Crescent, Winnipeg, Manitoba R3T 5S6, Canada XX DR SPTREMBL; O56124; O56124. DR SPTREMBL; O56125; O56125. DR SPTREMBL; O56126; O56126. DR SPTREMBL; O56130; O56130. DR SPTREMBL; O56131; O56131. DR SPTREMBL; O93201; O93201. DR SPTREMBL; O93202; O93202. DR SPTREMBL; Q9YIT3; Q9YIT3. DR SPTREMBL; Q9YIU3; Q9YIU3. DR SPTREMBL; Q9YJ73; Q9YJ73. DR SPTREMBL; Q9YR17; Q9YR17. XX CC On Feb 2, 1999 this sequence version replaced gi:4028609. XX FH Key Location/Qualifiers FH FT source 1. .1768 FT /db_xref="taxon:85542" FT /note="BCV sequence was obtained from several overlapping FT PCRs using DNA extracted from various tissues from cattle; FT similar to Porcine circovirus sequence presented in GenBank FT Accession Number AF027217" FT /virion FT /organism="bovine circovirus" FT repeat_region 13. .35 FT /rpt_unit=13. .18 FT /rpt_type=TANDEM FT CDS 51. .995 FT /codon_start=1 FT /db_xref="SPTREMBL:Q9YJ73" FT /note="ORF-1; similar to Porcine circovirus ORF1 encoded by FT the sequence presented in GenBank Accession Number FT AF027217." FT /product="putative Rep and coat protein" FT /protein_id="AAD11928.1" FT /translation="MPSKKNGRSGPQPHKRWVFTLNNPSEDERKKIRELPISLFDYFIV FT GEEGNEEGRTPHLQGFANFVKKQTFNKVKWYLGARCHIEKAKGTDQQNKEYCSKEGNLL FT IECGAPRSQGQRSDLSTAVSTLLESGSLVTVAEQHPVTFVRNFRGLAELLKVSGKMQKR FT DWKTNVHVIVGPPGCGKSKWAANFADPETTYWKPPRNKWWDGYHGEEVVVIDDFYGWLP FT WDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEWYSSTAVPAVEALYRRITSL FT VFWKNATEQSTEEGGQFVTLSPPCPEFPYEINY" FT polyA_signal 327. .332 FT CDS complement(357. .671) FT /codon_start=1 FT /db_xref="SPTREMBL:O56124" FT /note="similar to Porcine circovirus ORF-3 encoded by the FT sequence presented in GenBank Accession Number AF027217." FT /product="ORF-3" FT /protein_id="AAD11930.1" FT /translation="MVTIPPLVSRWFPVCGFRVCKISSPFAFTTPRWPHNDVYIGLPIT FT LLHFPAHFQKFSQPAEISDKRYRVLLCNGHQTPALQQGTHSSRQVTPLSLRSRSSTFNK FT " FT CDS complement(386. .565) FT /codon_start=1 FT /db_xref="SPTREMBL:O56125" FT /note="similar to Porcine circovirus ORF-4 encoded by the FT sequence presented in GenBank Accession Number AF027217." FT /product="ORF-4" FT /protein_id="AAD11931.1" FT /translation="MTCTLVFQSRFCIFPLTFKSSASPRKFLTNVTGCCSATVTRLPLS FT NKVLTAVDRSLRCP" FT CDS 553. .732 FT /codon_start=1 FT /db_xref="SPTREMBL:Q9YIU3" FT /product="ORF-12" FT /protein_id="AAD11927.1" FT /translation="MYTSLWGHLGVVKANGLLILQTRKPHTGNHLETSGGMVTMVKKWL FT LLMTFMAGCRGMIY" FT CDS complement(688. .753) FT /codon_start=1 FT /db_xref="SPTREMBL:O56126" FT /product="ORF-8" FT /protein_id="AAD11935.1" FT /translation="MDIDHTVSVDHPTAASHKSHQ" FT polyA_signal 983. .988 FT CDS complement(989. .1033) FT /codon_start=1 FT /db_xref="SPTREMBL:O93202" FT /product="ORF-11" FT /protein_id="AAD11937.1" FT /translation="MNNKNHYEVIKKTQ" FT CDS 1016. .1177 FT /codon_start=1 FT /db_xref="SPTREMBL:O93201" FT /product="ORF-5" FT /protein_id="AAD11932.1" FT /translation="MVFIIHLGFKWGVFKIKFSELYIHGYTDIVVLVVFTVFERSAEAY FT VVHISRGL" FT polyA_signal complement(1022. .1027) FT CDS complement(1256. .1735) FT /codon_start=1 FT /db_xref="SPTREMBL:Q9YR17" FT /note="similar to Porcine circovirus ORF-2 encoded by the FT sequence presented in GenBank Accession Number AF027217." FT /product="ORF-2" FT /protein_id="AAD11929.1" FT /translation="MTYPRRRYRRRRTRPRSHLGQILRRRPWLVHPRHRYRWRRKNGIF FT NTRLSRTFGYTVKATTVRTPSWAVDMMRFNIDDFVPPGGGTNKISIPFEYYRIRKVKVE FT FWPCSPITQGDRGVGSTAVILDDNFVTKATALTYDPYVNYSSRHTIPQPFSYHSR" FT CDS complement(1522. .1611) FT /codon_start=1 FT /db_xref="SPTREMBL:O56130" FT /product="ORF-6" FT /protein_id="AAD11933.1" FT /translation="MASSTPASPAPSDILSRLPQSERPPGRWT" FT CDS 1524. .1631 FT /codon_start=1 FT /db_xref="SPTREMBL:O56131" FT /product="ORF-10" FT /protein_id="AAD11936.1" FT /translation="MSTAQEGVLTVVALTVYPKVRERRVLKMPFFLLQR" FT CDS 1682. .1741 FT /codon_start=1 FT /db_xref="SPTREMBL:Q9YIT3" FT /product="ORF-7" FT /protein_id="AAD11934.1" FT /translation="MAAGAGPSSAVTPPWIRHS" FT stem_loop join(1750. .1768,1. .13) FT rep_origin join(1762. .1768,1. .2) FT /note="putative; similar to the nonanucleotide motif of FT Porcine circovirus presented in GenBank Accession Numbers FT AF027217 and U49186" XX SQ Sequence 1768 BP; 452 A; 362 C; 493 G; 461 T; 0 other; AF109397 Length: 1768 September 18, 2002 10:52 Type: N Check: 4617 .. 1 accagcgcac ttcggcagcg gcagcacctc ggcagcacct cagcagcaac 51 atgcccagca agaagaatgg aagaagcgga ccccaaccac ataaaaggtg 101 ggtgttcacg ctgaataatc cttccgaaga cgagcgcaag aaaatacggg 151 agctcccaat ctccctattt gattatttta ttgttggcga ggagggtaat 201 gaggaaggac gaacacctca cctccagggg ttcgctaatt ttgtgaagaa 251 gcaaactttt aataaagtga agtggtattt gggtgcccgc tgccacatcg 301 agaaagccaa aggaactgat cagcagaata aagaatattg cagtaaagaa 351 ggcaacttac ttattgaatg tggagctcct cgatctcaag gacaacggag 401 tgacctgtct actgctgtga gtaccttgtt ggagagcggg agtctggtga 451 ccgttgcaga gcagcaccct gtaacgtttg tcagaaattt ccgcgggctg 501 gctgaacttt tgaaagtgag cgggaaaatg cagaagcgtg attggaagac 551 caatgtacac gtcattgtgg ggccacctgg gtgtggtaaa agcaaatggg 601 ctgctaattt tgcagacccg gaaaccacat actggaaacc acctagaaac 651 aagtggtggg atggttacca tggtgaagaa gtggttgtta ttgatgactt 701 ttatggctgg ctgccgtggg atgatctact gagactgtgt gatcgatatc 751 cattgactgt agagactaaa ggtggaactg tacctttttt ggcccgcagt 801 attctgatta ccagcaatca gaccccgttg gaatggtact cctcaactgc 851 tgtcccagct gtagaagctc tctatcggag gattacttcc ttggtatttt 901 ggaagaatgc tacagaacaa tccacggagg aagggggcca gttcgtcacc 951 ctttcccccc catgccctga atttccatat gaaataaatt actgagtctt 1001 ttttatcact tcgtaatggt ttttattatt catttagggt ttaagtgggg 1051 ggtctttaag attaaattct ctgaattgta catacatggt tacacggata 1101 ttgtagtcct ggtcgtattt actgttttcg aacgcagtgc cgaggcctac 1151 gtggtccaca tttctagagg tttgtagcct cagccaaagc tgattccttt 1201 tgttatttgg ttggaagtaa tcaatagtgg agtcaagaac aggtttgggt 1251 gtgaattaac gggagtggta ggagaagggt tgggggattg tatggcggga 1301 ggagtagttt acatatgggt cataggttag ggctgtggcc tttgttacaa 1351 agttatcatc tagaataaca gcagtggagc ccactcccct atcaccctgg 1401 gtgatggggg agcagggcca gaattcaacc ttaacctttc ttattctgta 1451 gtattcaaag ggtatagaga ttttgttggt cccccctccc gggggaacaa 1501 agtcgtcaat attaaatctc atcatgtcca ccgcccagga gggcgttctg 1551 actgtggtag ccttgacagt atatccgaag gtgcgggaga ggcgggtgtt 1601 gaagatgcca tttttccttc tccaacggta gcggtggcgg gggtggacga 1651 gccaggggcg gcggcggagg atctggccaa gatggctgcg ggggcgggtc 1701 cttcttctgc ggtaacgcct ccttggatac gtcatagctg aaaacgaaag 1751 aagtgcgctg taagtatt