Sequence of DPV Bovine circovirus
Bovine circovirus, complete genome.
ACC No: AF109397
Dated: 2000-03-03 | Length: 1768 | CRC: 256445858
!!NA_SEQUENCE 1.0
ID AF109397 standard; circular DNA; VRL; 1768 BP.
XX
AC AF109397;
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SV AF109397.1
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DT 18-DEC-1998 (Rel. 58, Created)
DT 03-MAR-2000 (Rel. 62, Last updated, Version 4)
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DE Bovine circovirus, complete genome.
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KW .
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OS bovine circovirus
OC Viruses; ssDNA viruses; Circoviridae; Circovirus.
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RN [1]
RP 1-1768
RA Hamel A.L., Nayar G.P.S.;
RT "Nucleotide sequence of a circovirus detected in cattle with various
RT clinical syndromes";
RL Unpublished.
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RN [2]
RP 1-1768
RA Hamel A.L., Nayar G.P.S.;
RT ;
RL Submitted (27-NOV-1998) to the EMBL/GenBank/DDBJ databases.
RL Virology Laboratory, Veterinary Diagnostic Laboratory, Manitoba
RL Agriculture, 545 University Crescent, Winnipeg, Manitoba R3T 5S6, Canada
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RN [3]
RC Sequence update by submitter
RP 1-1768
RA Hamel A.L., Nayar G.P.S.;
RT ;
RL Submitted (02-FEB-1999) to the EMBL/GenBank/DDBJ databases.
RL Virology Laboratory, Veterinary Diagnostic Laboratory, Manitoba
RL Agriculture, 545 University Crescent, Winnipeg, Manitoba R3T 5S6, Canada
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DR SPTREMBL; O56124; O56124.
DR SPTREMBL; O56125; O56125.
DR SPTREMBL; O56126; O56126.
DR SPTREMBL; O56130; O56130.
DR SPTREMBL; O56131; O56131.
DR SPTREMBL; O93201; O93201.
DR SPTREMBL; O93202; O93202.
DR SPTREMBL; Q9YIT3; Q9YIT3.
DR SPTREMBL; Q9YIU3; Q9YIU3.
DR SPTREMBL; Q9YJ73; Q9YJ73.
DR SPTREMBL; Q9YR17; Q9YR17.
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CC On Feb 2, 1999 this sequence version replaced gi:4028609.
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FH Key Location/Qualifiers
FH
FT source 1. .1768
FT /db_xref="taxon:85542"
FT /note="BCV sequence was obtained from several overlapping
FT PCRs using DNA extracted from various tissues from cattle;
FT similar to Porcine circovirus sequence presented in GenBank
FT Accession Number AF027217"
FT /virion
FT /organism="bovine circovirus"
FT repeat_region 13. .35
FT /rpt_unit=13. .18
FT /rpt_type=TANDEM
FT CDS 51. .995
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9YJ73"
FT /note="ORF-1; similar to Porcine circovirus ORF1 encoded by
FT the sequence presented in GenBank Accession Number
FT AF027217."
FT /product="putative Rep and coat protein"
FT /protein_id="AAD11928.1"
FT /translation="MPSKKNGRSGPQPHKRWVFTLNNPSEDERKKIRELPISLFDYFIV
FT GEEGNEEGRTPHLQGFANFVKKQTFNKVKWYLGARCHIEKAKGTDQQNKEYCSKEGNLL
FT IECGAPRSQGQRSDLSTAVSTLLESGSLVTVAEQHPVTFVRNFRGLAELLKVSGKMQKR
FT DWKTNVHVIVGPPGCGKSKWAANFADPETTYWKPPRNKWWDGYHGEEVVVIDDFYGWLP
FT WDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEWYSSTAVPAVEALYRRITSL
FT VFWKNATEQSTEEGGQFVTLSPPCPEFPYEINY"
FT polyA_signal 327. .332
FT CDS complement(357. .671)
FT /codon_start=1
FT /db_xref="SPTREMBL:O56124"
FT /note="similar to Porcine circovirus ORF-3 encoded by the
FT sequence presented in GenBank Accession Number AF027217."
FT /product="ORF-3"
FT /protein_id="AAD11930.1"
FT /translation="MVTIPPLVSRWFPVCGFRVCKISSPFAFTTPRWPHNDVYIGLPIT
FT LLHFPAHFQKFSQPAEISDKRYRVLLCNGHQTPALQQGTHSSRQVTPLSLRSRSSTFNK
FT "
FT CDS complement(386. .565)
FT /codon_start=1
FT /db_xref="SPTREMBL:O56125"
FT /note="similar to Porcine circovirus ORF-4 encoded by the
FT sequence presented in GenBank Accession Number AF027217."
FT /product="ORF-4"
FT /protein_id="AAD11931.1"
FT /translation="MTCTLVFQSRFCIFPLTFKSSASPRKFLTNVTGCCSATVTRLPLS
FT NKVLTAVDRSLRCP"
FT CDS 553. .732
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9YIU3"
FT /product="ORF-12"
FT /protein_id="AAD11927.1"
FT /translation="MYTSLWGHLGVVKANGLLILQTRKPHTGNHLETSGGMVTMVKKWL
FT LLMTFMAGCRGMIY"
FT CDS complement(688. .753)
FT /codon_start=1
FT /db_xref="SPTREMBL:O56126"
FT /product="ORF-8"
FT /protein_id="AAD11935.1"
FT /translation="MDIDHTVSVDHPTAASHKSHQ"
FT polyA_signal 983. .988
FT CDS complement(989. .1033)
FT /codon_start=1
FT /db_xref="SPTREMBL:O93202"
FT /product="ORF-11"
FT /protein_id="AAD11937.1"
FT /translation="MNNKNHYEVIKKTQ"
FT CDS 1016. .1177
FT /codon_start=1
FT /db_xref="SPTREMBL:O93201"
FT /product="ORF-5"
FT /protein_id="AAD11932.1"
FT /translation="MVFIIHLGFKWGVFKIKFSELYIHGYTDIVVLVVFTVFERSAEAY
FT VVHISRGL"
FT polyA_signal complement(1022. .1027)
FT CDS complement(1256. .1735)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9YR17"
FT /note="similar to Porcine circovirus ORF-2 encoded by the
FT sequence presented in GenBank Accession Number AF027217."
FT /product="ORF-2"
FT /protein_id="AAD11929.1"
FT /translation="MTYPRRRYRRRRTRPRSHLGQILRRRPWLVHPRHRYRWRRKNGIF
FT NTRLSRTFGYTVKATTVRTPSWAVDMMRFNIDDFVPPGGGTNKISIPFEYYRIRKVKVE
FT FWPCSPITQGDRGVGSTAVILDDNFVTKATALTYDPYVNYSSRHTIPQPFSYHSR"
FT CDS complement(1522. .1611)
FT /codon_start=1
FT /db_xref="SPTREMBL:O56130"
FT /product="ORF-6"
FT /protein_id="AAD11933.1"
FT /translation="MASSTPASPAPSDILSRLPQSERPPGRWT"
FT CDS 1524. .1631
FT /codon_start=1
FT /db_xref="SPTREMBL:O56131"
FT /product="ORF-10"
FT /protein_id="AAD11936.1"
FT /translation="MSTAQEGVLTVVALTVYPKVRERRVLKMPFFLLQR"
FT CDS 1682. .1741
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9YIT3"
FT /product="ORF-7"
FT /protein_id="AAD11934.1"
FT /translation="MAAGAGPSSAVTPPWIRHS"
FT stem_loop join(1750. .1768,1. .13)
FT rep_origin join(1762. .1768,1. .2)
FT /note="putative; similar to the nonanucleotide motif of
FT Porcine circovirus presented in GenBank Accession Numbers
FT AF027217 and U49186"
XX
SQ Sequence 1768 BP; 452 A; 362 C; 493 G; 461 T; 0 other;
AF109397 Length: 1768 September 18, 2002 10:52 Type: N Check: 4617 ..
1 accagcgcac ttcggcagcg gcagcacctc ggcagcacct cagcagcaac
51 atgcccagca agaagaatgg aagaagcgga ccccaaccac ataaaaggtg
101 ggtgttcacg ctgaataatc cttccgaaga cgagcgcaag aaaatacggg
151 agctcccaat ctccctattt gattatttta ttgttggcga ggagggtaat
201 gaggaaggac gaacacctca cctccagggg ttcgctaatt ttgtgaagaa
251 gcaaactttt aataaagtga agtggtattt gggtgcccgc tgccacatcg
301 agaaagccaa aggaactgat cagcagaata aagaatattg cagtaaagaa
351 ggcaacttac ttattgaatg tggagctcct cgatctcaag gacaacggag
401 tgacctgtct actgctgtga gtaccttgtt ggagagcggg agtctggtga
451 ccgttgcaga gcagcaccct gtaacgtttg tcagaaattt ccgcgggctg
501 gctgaacttt tgaaagtgag cgggaaaatg cagaagcgtg attggaagac
551 caatgtacac gtcattgtgg ggccacctgg gtgtggtaaa agcaaatggg
601 ctgctaattt tgcagacccg gaaaccacat actggaaacc acctagaaac
651 aagtggtggg atggttacca tggtgaagaa gtggttgtta ttgatgactt
701 ttatggctgg ctgccgtggg atgatctact gagactgtgt gatcgatatc
751 cattgactgt agagactaaa ggtggaactg tacctttttt ggcccgcagt
801 attctgatta ccagcaatca gaccccgttg gaatggtact cctcaactgc
851 tgtcccagct gtagaagctc tctatcggag gattacttcc ttggtatttt
901 ggaagaatgc tacagaacaa tccacggagg aagggggcca gttcgtcacc
951 ctttcccccc catgccctga atttccatat gaaataaatt actgagtctt
1001 ttttatcact tcgtaatggt ttttattatt catttagggt ttaagtgggg
1051 ggtctttaag attaaattct ctgaattgta catacatggt tacacggata
1101 ttgtagtcct ggtcgtattt actgttttcg aacgcagtgc cgaggcctac
1151 gtggtccaca tttctagagg tttgtagcct cagccaaagc tgattccttt
1201 tgttatttgg ttggaagtaa tcaatagtgg agtcaagaac aggtttgggt
1251 gtgaattaac gggagtggta ggagaagggt tgggggattg tatggcggga
1301 ggagtagttt acatatgggt cataggttag ggctgtggcc tttgttacaa
1351 agttatcatc tagaataaca gcagtggagc ccactcccct atcaccctgg
1401 gtgatggggg agcagggcca gaattcaacc ttaacctttc ttattctgta
1451 gtattcaaag ggtatagaga ttttgttggt cccccctccc gggggaacaa
1501 agtcgtcaat attaaatctc atcatgtcca ccgcccagga gggcgttctg
1551 actgtggtag ccttgacagt atatccgaag gtgcgggaga ggcgggtgtt
1601 gaagatgcca tttttccttc tccaacggta gcggtggcgg gggtggacga
1651 gccaggggcg gcggcggagg atctggccaa gatggctgcg ggggcgggtc
1701 cttcttctgc ggtaacgcct ccttggatac gtcatagctg aaaacgaaag
1751 aagtgcgctg taagtatt