Sequence of DPV Pea seed-borne mosaic virus

Pea seed-borne mosaic virus strain S6 polyprotein gene, NIb-CP region, partial cds and 3' UTR.

ACC No: AF127767

Dated: 2001-11-17 | Length: 1737 | CRC: 881613688

                !!NA_SEQUENCE 1.0
ID   AF127767   standard; RNA; VRL; 1737 BP.
XX
AC   AF127767;
XX
SV   AF127767.1
XX
DT   17-NOV-2001 (Rel. 69, Created)
DT   17-NOV-2001 (Rel. 69, Last updated, Version 1)
XX
DE   Pea seed-borne mosaic virus strain S6 polyprotein gene, NIb-CP region,
DE   partial cds and 3' UTR.
XX
KW   .
XX
OS   Pea seed-borne mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1737
RA   Ali A., Randles J.W.;
RT   "Genomic heterogeneity in Pea seed-borne mosaic virus isolates from
RT   Pakistan, the centre of diversity of the host species, Pisum sativum";
RL   Arch. Virol. 146:1855-1870(2001).
XX
RN   [2]
RP   1-1737
RA   Ali A.;
RT   ;
RL   Submitted (12-FEB-1999) to the EMBL/GenBank/DDBJ databases.
RL   Applied and Molecular Ecology, University of Adelaide, Waite Campus, Glen
RL   Osmond, SA 5064, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1737
FT                   /country="Australia: South"
FT                   /db_xref="taxon:12208"
FT                   /organism="Pea seed-borne mosaic virus"
FT                   /strain="S6"
FT   CDS             <1. .1578
FT                   /codon_start=1
FT                   /note="contains partial NIb and CP"
FT                   /product="polyprotein"
FT                   /protein_id="AAL32130.1"
FT                   /translation="YTEIIYTPIATPDGSVIKKTKGNNSGQPSTVVDNTLMVILAMQYS
FT                   LQLLGVDFETQDDVIRYFANGDDLLIAVRPDCEFVLEGLEKHFSNLGLNYDFSARHHDK
FT                   KDVWFMSTKGILRDGILIPKLEEERIVAILEWDRSREFSHRLDAVCAAMIEAWGYDELL
FT                   QHIRKFYYWLLEQEPYRSIAQEGKAPYIAETALRHLYTNAVATQSELERYIEAIDQHYN
FT                   EDGNGPIKVRLQAGDETKDEEKRRKEEEDRKRREENIDASQFDSSRDNKKNKNKESDTS
FT                   NKAIVKSDRDVDAGTSGTITVPRLEKISAKIRMPKHKGGVAISLQHLVDYNPAQVDISN
FT                   TRATQSQFDNWWRAVSQEYGIGDSEMQVLASGLMVWCIENGTSPNINGMWTMMDGEEQV
FT                   EYPLKPVMDNARPTFRQIMAHFSDVAEAYIEKRNSTEVYIPRYALQRNLRDPSLARYGF
FT                   DFYEITAKTPVRAREAHFQMKAAAIRGKSNSLFGLDGNVGTQEENTERHTAEDVNQNMH
FT                   NLLGMRAM"
FT   3'UTR           1579. .1737
XX
SQ   Sequence 1737 BP; 589 A; 314 C; 428 G; 406 T; 0 other;

AF127767  Length: 1737  December 21, 2001 14:52  Type: N  Check: 755  ..

       1  tacacagaaa tcatttacac tccaatagcg acaccagatg gttcagttat
      51  aaagaaaaca aaaggaaata acagtggcca accatcaact gtcgtcgata
     101  acacattaat ggtaattctc gcaatgcagt acagcttgca gttactaggt
     151  gtggattttg aaactcagga tgacgtcatt cgctatttcg caaatggtga
     201  tgatctcctc atagctgtgc gtccagattg tgaattcgtg ctcgaaggtt
     251  tagagaaaca tttctcaaac ctagggttaa actacgactt ttcggcacgg
     301  catcatgata agaaagacgt ttggtttatg tcaacaaaag gcattttaag
     351  agatggtatt ctaataccaa agctcgaaga ggaacgaatc gttgcaattc
     401  tggaatggga tagaagcagg gaattctctc acagactcga tgcagtatgt
     451  gcagcaatga ttgaagcttg gggttacgat gaacttttgc agcacattcg
     501  gaaattctat tattggctgc tagaacagga gccatataga agtatagctc
     551  aggaaggcaa ggcaccatat attgcagaaa cagctcttcg acacttatac
     601  acaaatgctg tcgcaacaca aagtgaatta gaaaggtaca tagaagcaat
     651  tgatcagcac tacaatgagg acggtaatgg tccgattaaa gtgaggttgc
     701  aagctggtga tgagaccaaa gatgaagaga aacggagaaa agaagaggag
     751  gatagaaaga gacgagagga gaatatcgac gcaagtcaat ttgattcgag
     801  tcgagacaac aaaaagaaca aaaacaaaga gagtgataca tcgaacaaag
     851  ccatagtgaa atcagatcga gatgttgatg caggaacatc aggaaccatc
     901  acagtgccta gactcgaaaa gatttcagca aaaattagaa tgccgaagca
     951  caaaggtggg gtggcgatta gtctgcagca tttggttgac tacaacccag
    1001  cacaggttga catatcaaac actcgcgcaa cacagagcca atttgataat
    1051  tggtggagag cagtgtctca agagtatggg attggtgaca gcgagatgca
    1101  agtgttagca agtggtttga tggtgtggtg tattgaaaac ggaacatcgc
    1151  ctaacataaa tgggatgtgg acaatgatgg acggggagga acaggttgag
    1201  taccccctaa aaccagtgat ggataatgcg cgtccaactt ttagacaaat
    1251  aatggcgcat ttcagtgacg tagcggaggc gtacattgaa aagagaaact
    1301  caacagaagt gtacataccc aggtatgctt tacaacgcaa tttaagggac
    1351  ccgagtctag cgagatatgg tttcgatttt tacgaaatca cagccaagac
    1401  acctgtgagg gcaagagagg cacactttca aatgaaagca gcagcaatca
    1451  gaggaaaatc caacagccta tttggcttgg acgggaacgt tgggacacag
    1501  gaggaaaaca cggagaggca cacagcagaa gatgtcaatc agaatatgca
    1551  caaccttctt ggaatgagag ccatgtaaac cgtatgtatt ttcagtactg
    1601  tcatgcattt tcgttaaatt cagtgtgcct ttgacaccat gtttaatagc
    1651  attatgtatt ctagggttct attatcatca attccatagc gagtctttga
    1701  ctccggtttg gtggcagtag ggctttctgg agaaaaa