Sequence of DPV Capsicum chlorosis virus

Thailand tomato tospovirus nucleocapsid protein mRNA, partial cds.

ACC No: AF134400

Dated: 2004-06-09 | Length: 828 | CRC: -207079387

                !!NA_SEQUENCE 1.0
ID   AF134400   standard; mRNA; VRL; 828 BP.
XX
AC   AF134400;
XX
SV   AF134400.2
XX
DT   26-APR-1999 (Rel. 59, Created)
DT   09-JUN-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Thailand tomato tospovirus nucleocapsid protein mRNA, partial cds.
XX
KW   .
XX
OS   Thailand tomato tospovirus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-828
RA   Pongsapitch P., Chiemsombat P., Seetou W.;
RT   "Nucleocapsid protein gene of Tospovirus serogroup IV infecting tomato in
RT   Thailand";
RL   Unpublished.
XX
RN   [2]
RP   1-828
RA   Pongsapitch P., Chiemsombat P.;
RT   ;
RL   Submitted (11-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   of Plant Pathology, Kasetsart University, Malai-Man, Nakhon-Pathom 73140,
RL   Thailand
XX
RN   [3]
RC   Sequence update by submitter
RP   1-828
RA   Pongsapitch P., Chiemsombat P.;
RT   ;
RL   Submitted (08-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL   of Plant Pathology, Kasetsart University, Malai-Man, Nakhon-Pathom 73140,
RL   Thailand
XX
CC   On Jun 8, 2004 this sequence version replaced gi:4589260.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .828
FT                   /country="Thailand"
FT                   /db_xref="taxon:91749"
FT                   /mol_type="mRNA"
FT                   /organism="Thailand tomato tospovirus"
FT                   /strain="tomato"
FT   CDS             1. .828
FT                   /codon_start=1
FT                   /db_xref="GOA:Q9WHT2"
FT                   /db_xref="UniProt/TrEMBL:Q9WHT2"
FT                   /note="capsid protein"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AAD26423.2"
FT                   /translation="MSNVKQLTEKKIKELLAGGTADVEIETDDSTPGFSFKAFYDSNKN
FT                   VEMTFTNCLNILKCRKQIFAACKSGKYKFCDKTIVSTAADVGPDDWTFKRTEALIRVKM
FT                   INMIEKNKNETAKQEMYSKVMELPLVAAYGLNIPASFDSCALRMMLCIGGPLPLLSSIK
FT                   GLAPIIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQVEFKEDLDKLFKQAVKL
FT                   LNESHPGTASSISLKKYDEQVKYMDKVFSANLSVDDYGEHSKKSSKLSTSIEV"
XX
SQ   Sequence 828 BP; 279 A; 137 C; 173 G; 239 T; 0 other;

  AF134400  Length: 828  June 22, 2004 14:38  Type: N  Check: 8627  ..

       1  atgtctaacg tcaagcaact cacagagaag aagattaagg aactcttggc
      51  tggaggaact gcagatgtgg aaatagaaac cgatgattca actcccggat
     101  ttagcttcaa agcgttttat gatagtaata aaaatgttga aatgaccttc
     151  acaaactgct tgaatatcct aaaatgcaga aagcagatct ttgctgcttg
     201  caaaagtgga aagtacaaat tctgtgacaa aacaattgtt tccacggctg
     251  ctgatgttgg tccagatgac tggactttta agagaacaga agctttgata
     301  agagttaaaa tgatcaacat gatagagaaa aacaagaatg aaactgctaa
     351  gcaagagatg tattcaaagg tgatggaatt gccattagtg gcagcttatg
     401  gattgaatat acctgcttca tttgactctt gcgctttaag aatgatgtta
     451  tgcattggag gacctttacc tcttttgtct agcattaaag gccttgcacc
     501  aatcattttc ccattagctt attatcagaa tgttaaaaaa gagaaattgg
     551  gcattaagaa tttctctact tatgaacagg tctgcaaagt agctaaggtt
     601  ctttctgctt ctcaagtaga gtttaaagaa gatttagata agttatttaa
     651  gcaagctgtc aagctgctca atgagagcca ccctggtact gccagttcta
     701  tctcactcaa gaaatacgat gagcaagtta aatacatgga caaagttttc
     751  agtgctaatt tgtctgtgga tgattatggt gagcactcga agaagagctc
     801  aaagcttagt acatctatcg aagtgtaa