Sequence of DPV Soil-borne cereal mosaic virus
Soil-borne rye mosaic virus strain G RNA1 148K protein, 207K protein, and 37K protein genes, complete cds.
ACC No: AF146278
Dated: 1999-12-21 | Length: 7026 | CRC: -47787475
!!NA_SEQUENCE 1.0
ID AF146278 standard; RNA; VRL; 7026 BP.
XX
AC AF146278;
XX
SV AF146278.1
XX
DT 21-DEC-1999 (Rel. 62, Created)
DT 21-DEC-1999 (Rel. 62, Last updated, Version 1)
XX
DE Soil-borne rye mosaic virus strain G RNA1 148K protein, 207K protein, and
DE 37K protein genes, complete cds.
XX
KW .
XX
OS Soil-borne cereal mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-7026
RA Koenig R., Pleij C.W.A., Huth W.;
RT "Molecular characterization of a new furovirus mainly infecting rye";
RL Arch. Virol. 144:2125-2140(1999).
XX
RN [2]
RP 1-7026
RA Koenig R.;
RT ;
RL Submitted (28-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Pflanzenvirologie, Biologische Bundesanstalt fuer Land-und
RL Forstwirtschaft, Messeweg 11, Braunschweig D38104, Germany
XX
DR SPTREMBL; Q9JAD4; Q9JAD4.
DR SPTREMBL; Q9Q9Q9; Q9Q9Q9.
DR SPTREMBL; Q9Q9R0; Q9Q9R0.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7026
FT /chromosome="RNA1"
FT /db_xref="taxon:100887"
FT /organism="Soil-borne cereal mosaic virus"
FT /strain="G"
FT CDS 109. .5559
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9JAD4"
FT /note="putative replicase; ORF2; readthrough protein"
FT /transl_except=(pos:4033. .4035,aa:OTHER)
FT /product="207K protein"
FT /protein_id="AAF18327.1"
FT /translation="MPIDSSSILGIISEEDVVRAAISTSATKFGSQLHGTVCDHVKETY
FT LDAVERQKIKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL
FT LLSRIPKKAWVYDIGGNWATHVKRNDGRKVHCCCPTLDIRDAGRKTTRWASIEKYQDEK
FT ETIPVEIGEKLKRIQADENSIYANLKAGRCQPEDLNGKWYCGNKFEECVFTAERAYAMA
FT IHSIYDIDLMDLANALEEKRIRIMSGTFLFSVDLLLGKKQGRLPTMDGFFEVEGDYVKY
FT GFHNDTNPGYKHKLSQLMKYLTKTFVTAKGGSIYYLELTELRGDVMFFTMTDATEARMN
FT GVVQDESFKCIPIEDNGNVVFPLFEVDKRSDTLCFSEILLPRDFVQRAVEYTGRLKGNQ
FT LTAENVNTYLTSTNNTIIIGGSSKKNVNKVDSLLIAQITTTLVVWTELMHARQKRVMEL
FT LRLQMKDDVDFKSLAHAAFLKVFGKVSFYQKALRSFANWISYCHGSDAIHFRPVPLYVE
FT ITDRVKLWKTYAPNQGFVLDMEDLDEKIKLHEITEREKYDVSRHIVSTKLGELATGDYG
FT ASEKVCDMTCTDSRRKTDFGDLLEGEVATNFIDSWCEKDDHFNFSYDGAESKYAWCAKL
FT LRMVLDTLIPPMEFAPVYVDDKDVSIRIASRIEKSEENDAEVTTDGTSGFVGTERRKFD
FT AAVDFLMVAGNKTTDKLKAQRTEVVAVANAVVAQNKLYTESEVSNAVKLWADVDDEFLE
FT EEETAAPVADITDLASVNEENFENLQLGSSSNSTSAVVARENLSVGNDMGTAAVTSDGC
FT STEGELREKSWASLAEEESDSSYYLTTAIISGKVQKNALPKAPDFSKYATFQAKAKQEA
FT LWYLQCKIVSDRTTLRSIIDDHLRGMFHNDTCELPKDSAFLDYTTDNGGAWMYGKPSRF
FT GHSYGVGFSLNSKQEITKCELVKLMWNYDGKGQISQKPVNTKAFSYLLLSDLTFMMNEL
FT LIFCNLQKVIRKKERTKHALITLRDGVPGCGKSTWIVENANPMKDMVLSMCKEATEDLK
FT EKFAKRLKCTETALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYFCADILGAK
FT RVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKKSYYSGGR
FT VLTKNTTLRSMNTVGPRGAKPMTSVHCVPYQRDTQYLTFTQSEKSDLYKALRNRGPVNV
FT NTVHETQGKTFDDVIVVRLKTTENEIYPGGRKAQPYEIVATTRHRRSLVYYTAIEDRLF
FT SDINDMRDVMEDKLMKNLSSELVKXRFGSKYESILICDREVRVPDVGNSVILQDFYDRV
FT LPGNSTMDSHFDGYEVATTDITIEVENCKVHPHKNVKVWQDKRGLVPVLRTAMPPKRQN
FT GMVEALLALKKRNMAAPKLQEAVNEFEVIDRTISRARSIFLNEDMIDESLVSTRESNMR
FT WWERQSHTARQQLKSEYRVLHELDLCRYSYWIKGDEKPKNDLTPQREYGALQTVVYPDK
FT IVNALFGPVMKEINERIRMALKPHVVYNSRMNAEELNRTVEFLDPEDEYDAFEIDFSKF
FT DKSKTSLHIRAVIELYKLFGLDDMLALLWEKSQCQTTVIDKTNGITAYLLYQQKSGNCD
FT TYGSNTWSAALALLESMPLEKAKFMIFGGDDSLILFPKQLCIEDPCRRLASLWNFDCKL
FT FNFRHNMFCGKFLLKIGNKFKFAPDPMKLLTKLGRKDIADGKLLSEIFVSMGDNYCSYR
FT DYRILEQLAVAVQERYRTNEDPTAMLITLKKYIFDFKLLASLFNYSGGFEVCKVGRNFE
FT W"
FT CDS 109. .4035
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9Q9R0"
FT /note="putative replicase; ORF1"
FT /product="148K protein"
FT /protein_id="AAF18326.1"
FT /translation="MPIDSSSILGIISEEDVVRAAISTSATKFGSQLHGTVCDHVKETY
FT LDAVERQKIKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL
FT LLSRIPKKAWVYDIGGNWATHVKRNDGRKVHCCCPTLDIRDAGRKTTRWASIEKYQDEK
FT ETIPVEIGEKLKRIQADENSIYANLKAGRCQPEDLNGKWYCGNKFEECVFTAERAYAMA
FT IHSIYDIDLMDLANALEEKRIRIMSGTFLFSVDLLLGKKQGRLPTMDGFFEVEGDYVKY
FT GFHNDTNPGYKHKLSQLMKYLTKTFVTAKGGSIYYLELTELRGDVMFFTMTDATEARMN
FT GVVQDESFKCIPIEDNGNVVFPLFEVDKRSDTLCFSEILLPRDFVQRAVEYTGRLKGNQ
FT LTAENVNTYLTSTNNTIIIGGSSKKNVNKVDSLLIAQITTTLVVWTELMHARQKRVMEL
FT LRLQMKDDVDFKSLAHAAFLKVFGKVSFYQKALRSFANWISYCHGSDAIHFRPVPLYVE
FT ITDRVKLWKTYAPNQGFVLDMEDLDEKIKLHEITEREKYDVSRHIVSTKLGELATGDYG
FT ASEKVCDMTCTDSRRKTDFGDLLEGEVATNFIDSWCEKDDHFNFSYDGAESKYAWCAKL
FT LRMVLDTLIPPMEFAPVYVDDKDVSIRIASRIEKSEENDAEVTTDGTSGFVGTERRKFD
FT AAVDFLMVAGNKTTDKLKAQRTEVVAVANAVVAQNKLYTESEVSNAVKLWADVDDEFLE
FT EEETAAPVADITDLASVNEENFENLQLGSSSNSTSAVVARENLSVGNDMGTAAVTSDGC
FT STEGELREKSWASLAEEESDSSYYLTTAIISGKVQKNALPKAPDFSKYATFQAKAKQEA
FT LWYLQCKIVSDRTTLRSIIDDHLRGMFHNDTCELPKDSAFLDYTTDNGGAWMYGKPSRF
FT GHSYGVGFSLNSKQEITKCELVKLMWNYDGKGQISQKPVNTKAFSYLLLSDLTFMMNEL
FT LIFCNLQKVIRKKERTKHALITLRDGVPGCGKSTWIVENANPMKDMVLSMCKEATEDLK
FT EKFAKRLKCTETALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYFCADILGAK
FT RVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKKSYYSGGR
FT VLTKNTTLRSMNTVGPRGAKPMTSVHCVPYQRDTQYLTFTQSEKSDLYKALRNRGPVNV
FT NTVHETQGKTFDDVIVVRLKTTENEIYPGGRKAQPYEIVATTRHRRSLVYYTAIEDRLF
FT SDINDMRDVMEDKLMKNLSSELVK"
FT CDS 5621. .6601
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9Q9Q9"
FT /note="putative movement protein; ORF3"
FT /product="37K protein"
FT /protein_id="AAF18328.1"
FT /translation="MGSKDVKGDSFESVYNKILDLQTEGAVGADSLKTNRQRSFNIENK
FT YVEKALVQQDITTKMRDAWTTWTKTNKEEGTPYNMSYSCVLLNVIPTVPRGYSGTVEIS
FT LIDSGLSPLENVIPDQTQMMELGNGPHVMCFFMHYGVPLNDEGRVIKLSFKIEAEMASK
FT KMSVMNVYSYWTQKQGHLSVYTEPQRSTCSKLLLGYDKSLKLKTRDDVRRFVSRSLATN
FT NLEQRVPQMLPNNINILKENVPLFKKESVLDLTEQEREKQKKLETLRSVNETQRRKSAQ
FT EMQKRNDDLIKANVQKQKAKQFEIDENRKNHYDASGMKFGSVGSD"
XX
SQ Sequence 7026 BP; 2028 A; 1174 C; 1860 G; 1964 T; 0 other;
AF146278 Length: 7026 December 21, 2001 14:53 Type: N Check: 4447 ..
1 ggtatttctt atcacttaac gtcgttagac aacacaagtg ttaacgaaat
51 acagatcttg tcaaacaaag gcacgcttcg gcgataaatc ctttgtttac
101 aagacacaat gccgattgat agcagttcaa tattgggtat tatcagtgag
151 gaagatgttg tgcgggcggc tattagcact agtgctacga aattcggttc
201 gcaattgcat ggtacagtgt gtgatcatgt gaaggagaca tatcttgacg
251 cggttgaaag acagaaaata aaaaagaaaa ttgacgttcg tagggaccta
301 tcacaagagc agctgcagtt gctgaacgat ttatatcccg aacgacacat
351 cgtttccagc aattgcgaac gcggtacgca cagctttgca gcggcctctc
401 ggaagattga aacagacttg ttgttaagtc gaataccaaa aaaggcctgg
451 gtttacgata ttggtggtaa ttgggcgaca catgtgaagc ggaatgatgg
501 taggaaggta cactgttgct gtccgacgtt ggacattcgt gacgccggtc
551 gtaagacgac tcgctgggct tctattgaga agtaccaaga cgagaaggaa
601 acgattcctg ttgaaatcgg tgaaaagctc aagaggatac aggcggacga
651 gaatagcatc tacgctaatc ttaaagctgg tagatgccaa ccagaggatc
701 tgaatgggaa gtggtattgt ggtaataaat tcgaagagtg cgtgtttacg
751 gctgaaagag cctatgccat ggctatacac agtatttatg acattgatct
801 aatggacttg gccaacgctt tagaagaaaa acgtataagg ataatgagtg
851 gcacgttcct gttttcagtg gatctactgc ttgggaaaaa gcaggggaga
901 cttccaacga tggacggttt ctttgaggtg gaaggtgatt atgtgaagta
951 tggttttcat aatgacacca atccgggtta caagcacaaa ctgagtcagt
1001 tgatgaagta tcttacgaag acctttgtta ctgctaaagg gggttcgata
1051 tattatcttg aactgacaga gttgcgaggt gacgtgatgt tttttactat
1101 gacggacgct acggaggcta ggatgaatgg tgtggttcag gatgagtctt
1151 tcaagtgcat acctatagag gacaacggaa atgtggtgtt tcctttgttt
1201 gaagtggaca agcgtagtga tacgctttgc ttctcggaga ttttactgcc
1251 ccgtgatttt gtgcagaggg cggttgagta taccggtcgt ttgaaaggga
1301 atcaactcac tgcggaaaac gtaaacacat atctgacatc gaccaataat
1351 accattatta ttggcggttc ttcaaagaaa aatgtgaaca aggttgattc
1401 actgctgata gcacagataa ctacgacgtt ggtggtttgg actgaactga
1451 tgcatgcaag gcagaagcga gtaatggagt tgctgaggtt gcagatgaag
1501 gacgatgtgg attttaagtc tttggcacat gctgcatttc tgaaagtgtt
1551 cggtaaggtg agtttctacc aaaaggcgtt gaggagtttc gcgaattgga
1601 tttcatattg tcatggctct gacgctatac attttcgccc tgtgccactg
1651 tatgttgaaa taaccgacag agtgaagttg tggaaaactt atgcaccgaa
1701 tcaaggattc gttttggata tggaggattt ggacgaaaag ataaaactgc
1751 atgagataac cgaaagggaa aaatacgatg ttagtagaca cattgtatct
1801 actaaacttg gtgagttggc tactggagat tacggtgcat ccgaaaaagt
1851 ttgtgatatg acgtgcactg atagccggag aaaaactgat tttggtgatc
1901 tgttggaagg agaggtggcc acaaacttca ttgactcttg gtgcgagaaa
1951 gacgatcatt ttaacttttc ttatgatggt gctgaatcaa agtacgcgtg
2001 gtgtgcaaag ttgctgagaa tggtgttgga cactttgatc cctcccatgg
2051 aatttgcgcc cgtttatgtg gatgataagg acgtgtcgat tcgcattgca
2101 tcgagaattg agaagagtga agaaaatgac gctgaggtta ctactgatgg
2151 tacctctgga tttgttggca ctgagaggag aaagtttgac gctgctgtgg
2201 atttcctgat ggttgctgga aacaaaacca cggataaact gaaagctcag
2251 agaacagagg tcgttgctgt ggctaacgcg gtagtcgcgc agaataagct
2301 gtacacggaa tctgaggtgt ctaatgcagt gaagctttgg gctgatgttg
2351 atgacgaatt tctagaagaa gaagagacag ctgctcccgt ggcggacatt
2401 actgatctcg cttctgtaaa tgaagagaat tttgagaatt tgcaactggg
2451 tagttcgtct aattctacgt cagccgttgt ggcaagagag aatctgtctg
2501 tgggtaacga catgggcacc gcagctgtga ctagcgatgg ttgttcgact
2551 gagggtgaac ttagggaaaa atcttgggca tctttggcag aggaagaaag
2601 cgattcgtct tactatttaa caaccgcgat tatttcgggt aaagtgcaga
2651 aaaatgcact accaaaagct ccagattttt cgaagtatgc gacgtttcaa
2701 gcgaaggcga aacaggaggc tttgtggtac ttgcaatgca agatcgtttc
2751 tgatcgtacg accctgcgga gcatcataga cgatcatttg agaggtatgt
2801 ttcacaatga tacttgtgag ttgcctaagg attcagcttt tttggactac
2851 acgactgata acggtggcgc ttggatgtac gggaaaccgt ccagatttgg
2901 gcacagttac ggtgtgggtt tttcattgaa ttcgaagcag gaaattacca
2951 agtgtgagtt agtgaaactg atgtggaact atgatggcaa ggggcagata
3001 agtcaaaaac cggtgaacac gaaagctttt tcgtatctgt tgctgagtga
3051 cttgacattc atgatgaacg aattgctcat tttctgcaat ttgcagaagg
3101 ttatcaggaa gaaagaacgg acgaaacatg cccttattac tttacgggat
3151 ggtgttccag gttgcggcaa atctacttgg attgttgaga acgcaaaccc
3201 catgaaagat atggtattgt ccatgtgcaa ggaggcgact gaagatttga
3251 aagaaaaatt tgcgaagagg ttgaaatgta cggaaacggc gttgaggcgg
3301 gtgcgaactg tggattcttt tctgatgcat gattatgata aattcagggc
3351 agcgacggtt catttcgacg aagctctgat ggcgcatgca ggaatggttt
3401 acttctgtgc ggatattttg ggtgcaaaac gagtgctgtg ccaaggagac
3451 tcacaacaga ttccttttat aaatcgtgtt gaatctatca ctctgaaata
3501 cgcaaaattg cagattgatg atacggagta tgtgagattg acctatcggt
3551 cgcctattga tgttgcacac tatctcacga agaagtctta ttatagtgga
3601 ggtagggtgc ttacgaagaa cacaactttg aggtctatga acactgttgg
3651 ccctcgcggt gcgaagccta tgacatctgt acattgtgtt ccataccaac
3701 gtgatactca atatctgacg tttactcaat cggagaaatc tgacctttat
3751 aaggcactac gaaacagggg gccggtaaat gtgaataccg tgcacgagac
3801 acagggtaag acgttcgatg atgtaatcgt ggtgaggctg aagacgacgg
3851 aaaatgagat ttatcccggg ggaaggaagg ctcaaccata tgagattgtg
3901 gctactacga ggcacagacg ttcgttggtg tactatactg cgattgagga
3951 taggctgttt tctgatatca atgacatgag ggatgtaatg gaagacaaat
4001 tgatgaagaa ccttagctct gagttggtga aatgacggtt tgggtcgaag
4051 tatgagtcca tattgatttg tgatagggaa gtgagggtac ccgatgtggg
4101 aaattctgtt attttgcagg atttttacga cagggttcta cctggaaatt
4151 ctacaatgga ttcacacttc gacgggtatg aagtggcaac gacagacatt
4201 actatagagg ttgaaaattg taaggttcac cctcataaga atgtgaaagt
4251 ttggcaagat aaacggggtc tggttcccgt tttgcgtact gcaatgccgc
4301 caaaaaggca gaatggcatg gtggaagcac ttttggcgtt gaagaaaagg
4351 aacatggctg caccgaaact acaagaagct gtgaatgaat tcgaggtcat
4401 agatcggact attagtcgcg ctagatcaat tttcttaaat gaagacatga
4451 ttgacgaatc gttggtctca acgcgtgagt caaatatgcg atggtgggaa
4501 agacagtcac atacagctag gcagcaattg aaaagcgagt acagggtgtt
4551 gcatgagttg gacttgtgca gatattctta ctggattaaa ggggatgaaa
4601 aaccgaagaa cgatttgaca ccacaacgcg aatatggcgc tttgcagaca
4651 gttgtttatc ctgataagat tgttaatgcg ctgttcggac ctgttatgaa
4701 ggagataaat gagcgtataa gaatggcttt gaaacctcac gtggtttaca
4751 actcaaggat gaatgccgaa gagttgaatc ggactgttga atttctggat
4801 ccggaagatg agtatgacgc attcgaaata gacttttcaa aatttgacaa
4851 atcgaaaacg tcgttgcaca tacgagctgt aatagagttg tataagctgt
4901 ttggtttgga tgatatgttg gccttacttt gggagaaatc tcaatgtcag
4951 accactgtta ttgacaaaac aaacggcatt actgcttatt tgttgtacca
5001 gcagaaatct ggtaattgcg acacttatgg ttctaacacg tggtcggccg
5051 ctttggcgtt gttggagtct atgccattgg agaaagctaa atttatgatt
5101 tttggcggag atgactctct gattttattt cctaaacaac tctgcattga
5151 ggatccgtgt agacgtttgg cgtctctgtg gaacttcgat tgtaagttgt
5201 ttaactttag gcataatatg ttttgtggta agtttttatt gaagatcgga
5251 aacaagttta aattcgctcc agatccgatg aagttgttga cgaagttggg
5301 acgtaaggat attgcagatg gtaaattgct ctctgagatt tttgtttcta
5351 tgggagataa ttactgctct taccgggact atcgtatttt ggagcaactt
5401 gcggtggctg tgcaagaaag gtacaggacg aatgaagacc ctaccgcgat
5451 gttgatcact ttgaagaagt atatttttga ttttaagctg ttggctagtt
5501 tgtttaatta tagtggtggg tttgaagtgt gtaaagtggg gaggaacttt
5551 gagtggtgac tcgctgttct cgttgttttt cttttgtgta ttctattgtg
5601 ttaaacgttg tgctacagcc atgggttcaa aggatgtgaa gggtgactct
5651 tttgaaagtg tgtataacaa gattttggac ttacaaactg agggagctgt
5701 tggtgctgat agtcttaaga ccaatcgtca gaggagtttt aatatcgaga
5751 acaaatacgt agagaaagct ctggttcaac aagatattac gacaaagatg
5801 agagacgcat ggaccacttg gactaagact aataaggagg aaggaacgcc
5851 ctataatatg tcttatagct gcgtactgct gaacgtcatt ccaaccgtac
5901 cgcggggtta ttctggcaca gttgagattt cgttaattga ttcgggcctg
5951 tcaccgcttg aaaatgttat tccggatcag acgcagatga tggaacttgg
6001 gaatggaccg catgtgatgt gttttttcat gcactacggt gtaccgctca
6051 acgatgaagg cagggtgatt aagctgtcat ttaaaattga agcagaaatg
6101 gcttcaaaga agatgagtgt tatgaatgtt tactcctatt ggacgcaaaa
6151 acaaggacac ttatctgttt atactgaacc acagcgatcg acatgttcga
6201 aacttttact tggttacgac aaatcactga aattgaagac tagggatgac
6251 gtgcggcgtt ttgtttcacg atcactagca accaacaatc ttgagcaaag
6301 ggttcctcag atgcttccca acaacattaa cattcttaaa gagaacgtac
6351 ctcttttcaa aaaagagagc gtgctggatt tgacggaaca agagagagag
6401 aagcagaaaa agcttgaaac cttgagaagt gttaatgaga cgcagagacg
6451 taagagtgca caggaaatgc agaagagaaa tgatgatttg attaaggcga
6501 acgtgcaaaa gcaaaaggcc aaacaatttg aaattgatga gaatcggaaa
6551 aatcactatg atgcttcggg tatgaagttt ggttcagttg gaagtgactg
6601 agtccgtttt tcttttatgt atttgtatat gtattgtggt tttgttgtgt
6651 ggtttatttt tcgcttatat tgctatattg catgtgtgcg ttgaaaatag
6701 tctaacatgt cgggctgaga catgtcgttg ccgtcacgat agacggagcc
6751 gctgggattg cggattataa atcgaacaag cctatttgta cgggttgagt
6801 acaaacgtgg ccatcacgat agatggttct gtttttcgaa cagatgtaaa
6851 tcgaagacgt cgtgcagtac ggtaaactgc acatctatcc tctagtttct
6901 attgatgtaa ttgaaaaaag atcaatattt tacgatgatg aggagcgact
6951 ggtggtcgcg gtagctaaga cacagctact aagaggggtt caaatccccc
7001 cccgaaccgg agggttatcc ggccca