Sequence of DPV Soil-borne cereal mosaic virus
Soil-borne rye mosaic virus strain O RNA1 148K protein, 207K protein, and 37K protein genes, complete cds.
ACC No: AF146280
Dated: 2000-12-06 | Length: 6985 | CRC: -1757383003
!!NA_SEQUENCE 1.0
ID AF146280 standard; genomic RNA; VRL; 6985 BP.
XX
AC AF146280;
XX
SV AF146280.2
XX
DT 21-DEC-1999 (Rel. 62, Created)
DT 06-DEC-2000 (Rel. 66, Last updated, Version 2)
XX
DE Soil-borne rye mosaic virus strain O RNA1 148K protein, 207K protein, and
DE 37K protein genes, complete cds.
XX
KW .
XX
OS Soil-borne cereal mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-6985
RX MEDLINE; 20068741.
RX PUBMED; 10603167.
RA Koenig R., Pleij C.W., Huth W.;
RT "Molecular characterization of a new furovirus mainly infecting rye";
RL Arch. Virol. 144(11):2125-2140(1999).
XX
RN [2]
RP 1-6985
RA Koenig R.;
RT ;
RL Submitted (28-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Pflanzenvirologie, Biologische Bundesanstalt fuer Land-und
RL Forstwirtschaft, Messeweg 11, Braunschweig D38104, Germany
XX
RN [3]
RC Sequence update by submitter
RP 1-6985
RA Koenig R.;
RT ;
RL Submitted (05-DEC-2000) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Pflanzenvirologie, Biologische Bundesanstalt fuer Land-und
RL Forstwirtschaft, Messeweg 11, Braunschweig D38104, Germany
XX
CC On Dec 5, 2000 this sequence version replaced gi:6580866.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6985
FT /chromosome="RNA1"
FT /db_xref="taxon:100887"
FT /mol_type="genomic RNA"
FT /organism="Soil-borne cereal mosaic virus"
FT /strain="O"
FT CDS 85. .5535
FT /codon_start=1
FT /db_xref="GOA:Q9JAD2"
FT /db_xref="UniProt/TrEMBL:Q9JAD2"
FT /note="putative replicase; ORF2; readthrough protein"
FT /transl_except=(pos:4009. .4011,aa:OTHER)
FT /product="207K protein"
FT /protein_id="AAF18333.2"
FT /translation="MPIDSSSILGIISEEDVVRAAISTSATKFGSQLHGTVCDHVKETY
FT LDAVERQKIKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL
FT LLSRIPKKSWVYDIGGNWATHVKRNDGRKVHCCCPTLDIRDAGRKTTRWASIEKYQDEK
FT ETIPAEVGEKLKRIQEDENSIYANLKAGRCQPEDLNGKWYCGNKFEECVFTADRAYAMA
FT IHSIYDIDLMDLANALEEKRIRIMSGTFLLSVDLLLGKKQGRLPTMDGFFEVEGDYVKY
FT GFHNDTNPGYKHKLSQLMKYLTKTFVTAKGGSIYYLELTELRGDVMFFTMTDATEARMN
FT GVVQDESFKCIPIEDNGNVVFPLFEVDKRSDTLRFSEILLPRDFVQRAVEYTGRLKGNQ
FT LTAENVNTYLTSTNNTIIIGGSSKENVNKVDSLLIAQTTTTLVVWTELMHARQKRVMEL
FT LRLQMKEDVDFKSLAHAAFLKVFGKVSFYQKALRSFANWISYCHGSDAIHFRPVPLYVE
FT ITDRVKLWKTYAPNQGFVLDMEDLDEKIKLHEITEREKYDVSRHIVSTKLGELATGDYG
FT TSEKACDVVCTDNRRKTDFGDLLEGEVATNFIDSWCEKDDHFNFSYDGAESKYVWCAKL
FT LRMVWDTLIPPMEFAPVYVDDKDASIRIASRIEKSEKNDAEVTTDSTSGFVGAERKEFD
FT AAMDFLTVVGSKNTDKLNAQRTEVVAVANAVVAQNKLYTESEVSNAVKLWADVDDEFLE
FT EEETTAPISDVTGLASVNEEIFENLQLGSSSNSTPSVVARENLSVGNDMGPSAMTSDDC
FT STEGELREKSWASLAEEESDSSYYLKTAIISGKVQKSALPKAPDFSKFATFQAKAKQEA
FT LWYLQCKIVSDRTTLRSIIDDHLRGMFHNDTCELPKDSAFLDYTTDNGGAWMYGKPSKF
FT GHSYGVGFSLNSKQEITKCELVKLMWNYDGKGQISQKPVNTKVFPYLLLSELTFMMNEL
FT LIFCNLQKVIRKKERTKHTLITLRDGVPGCGKSTWIVENANPMKDMVLSMCKEATEDLK
FT EKFSKRLKCTESALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYFCADILGAK
FT KVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKKSYYSGGR
FT VLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRDTQYLTFTQSEKADLYKALRNRGPVNV
FT NTVHETQGKTFDNVIVVRLKTTENEIYPGGRKAQPYEIVATTRHRRSLVYYTAIEDRLF
FT SDINDMRDVMEDKLMKNLSSELVKXRFGSKYESILICDREVRVPDVGNSVILQDFYDRV
FT LPGNSTVDSHFDGYEVATTDITIEVENCKVHPHKNVRVWQDKRGLVPVLRTAMPPKRQN
FT GMVEALLALKKRNMAAPKLQEAVNEFEVIDRTISRARSIFLNEDMIDESLVSTRESNMR
FT WWERQSHTARQQLKSEYRVLHELDLCRYSYCIKGDEKPKNDLTPQREYGALQTVVYPDK
FT IVNALFGPVMKEINERIRMALKPHVVYSSRMNAEELNRTVEFLDPEDEYDAFEIDFSKF
FT DKSKTSLHIRAVIELYKLFGLDDMLALLWEKSQCQTTVIDKVNGITAYLLYQQKSGNCD
FT TYGSNTWSAALALLESMPLEKAKFMIFGGDDSPILFPKQLCIEDPCRRLASLWNFDCKL
FT FNFRHNMFCGKFLLKIGNKFKFAPDPMKLLTKLGRKDIADGKLLSEIFVSMGDNYGSYR
FT DYRILEQLAVAVQERYRTNEDPTAMLITLKKYIFDFKLLASLFNYSGEFEVCKVGRNFE
FT W"
FT CDS 85. .4011
FT /codon_start=1
FT /db_xref="GOA:Q9Q9Q6"
FT /db_xref="UniProt/TrEMBL:Q9Q9Q6"
FT /note="putative replicase; ORF1"
FT /product="148K protein"
FT /protein_id="AAF18332.2"
FT /translation="MPIDSSSILGIISEEDVVRAAISTSATKFGSQLHGTVCDHVKETY
FT LDAVERQKIKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL
FT LLSRIPKKSWVYDIGGNWATHVKRNDGRKVHCCCPTLDIRDAGRKTTRWASIEKYQDEK
FT ETIPAEVGEKLKRIQEDENSIYANLKAGRCQPEDLNGKWYCGNKFEECVFTADRAYAMA
FT IHSIYDIDLMDLANALEEKRIRIMSGTFLLSVDLLLGKKQGRLPTMDGFFEVEGDYVKY
FT GFHNDTNPGYKHKLSQLMKYLTKTFVTAKGGSIYYLELTELRGDVMFFTMTDATEARMN
FT GVVQDESFKCIPIEDNGNVVFPLFEVDKRSDTLRFSEILLPRDFVQRAVEYTGRLKGNQ
FT LTAENVNTYLTSTNNTIIIGGSSKENVNKVDSLLIAQTTTTLVVWTELMHARQKRVMEL
FT LRLQMKEDVDFKSLAHAAFLKVFGKVSFYQKALRSFANWISYCHGSDAIHFRPVPLYVE
FT ITDRVKLWKTYAPNQGFVLDMEDLDEKIKLHEITEREKYDVSRHIVSTKLGELATGDYG
FT TSEKACDVVCTDNRRKTDFGDLLEGEVATNFIDSWCEKDDHFNFSYDGAESKYVWCAKL
FT LRMVWDTLIPPMEFAPVYVDDKDASIRIASRIEKSEKNDAEVTTDSTSGFVGAERKEFD
FT AAMDFLTVVGSKNTDKLNAQRTEVVAVANAVVAQNKLYTESEVSNAVKLWADVDDEFLE
FT EEETTAPISDVTGLASVNEEIFENLQLGSSSNSTPSVVARENLSVGNDMGPSAMTSDDC
FT STEGELREKSWASLAEEESDSSYYLKTAIISGKVQKSALPKAPDFSKFATFQAKAKQEA
FT LWYLQCKIVSDRTTLRSIIDDHLRGMFHNDTCELPKDSAFLDYTTDNGGAWMYGKPSKF
FT GHSYGVGFSLNSKQEITKCELVKLMWNYDGKGQISQKPVNTKVFPYLLLSELTFMMNEL
FT LIFCNLQKVIRKKERTKHTLITLRDGVPGCGKSTWIVENANPMKDMVLSMCKEATEDLK
FT EKFSKRLKCTESALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYFCADILGAK
FT KVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKKSYYSGGR
FT VLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRDTQYLTFTQSEKADLYKALRNRGPVNV
FT NTVHETQGKTFDNVIVVRLKTTENEIYPGGRKAQPYEIVATTRHRRSLVYYTAIEDRLF
FT SDINDMRDVMEDKLMKNLSSELVK"
FT CDS 5597. .6577
FT /codon_start=1
FT /db_xref="GOA:Q9Q9Q5"
FT /db_xref="UniProt/TrEMBL:Q9Q9Q5"
FT /note="putative movement protein; ORF3"
FT /product="37K protein"
FT /protein_id="AAF18334.1"
FT /translation="MGSKDVKGDSFESVYNKILDLQTEGDVGADSLKTNRQRSFNIENK
FT YVEKALIQQDIATKMRDGWTTWTKTNKEEGTPYNMSYSCVLLNVIPTVPRGYSGTVEIS
FT LIDSGLSPLENVIPDQTQMMELGNGPHVMCLFMHYGIPLNDEGRVIKLSFKIGAEMASK
FT KMSVMNAYSYWTQKQGHLSVYTEPQRSTCSKLLLGYDKSLKLKTRGDVRRFVSRSLATN
FT NLEQSVPKMLPNSINILKENVPLFKKESVLDLTEQEREKQKRLDTLRNVNEAQRRKSAQ
FT ETQKRNDDLIKANVQKQKAKQFEIDENRKNHYDASGMKFGSVGSD"
XX
SQ Sequence 6985 BP; 2010 A; 1162 C; 1852 G; 1961 T; 0 other;
AF146280 Length: 6985 June 22, 2004 14:38 Type: N Check: 8748 ..
1 ttagacaaca caagtgttta cgaaatacag ttcttgtcaa acaaaggcac
51 gcttcggcga taaatccttt gtttacaaga cacaatgccg attgatagca
101 gttcaatatt gggtattatc agtgaggaag atgttgtacg ggctgcaatt
151 agcactagtg ctacgaaatt cggttcgcaa ttgcatggta cagtgtgtga
201 tcatgtgaag gagacatatc ttgatgcggt tgaaagacag aaaataaaaa
251 agaagattga cgttcgtagg gacctgtcac aagagcagct gcagttgttg
301 aacgatttat atcccgaacg acacatcgtt tccagcaatt gcgaacgcgg
351 tactcatagc tttgcagcgg cctctcggaa gatcgaaaca gacttgttgt
401 taagtcgaat accaaaaaaa tcgtgggttt acgatattgg tggtaattgg
451 gcgacacatg tgaagcggaa tgatggtagg aaagttcact gttgctgtcc
501 gaccttggac attcgtgacg ccggtcggaa gacgactcgc tgggcttcta
551 ttgagaagta ccaagacgag aaggaaacta ttcctgctga agtcggtgag
601 aagctcaaga ggatacagga ggacgagaat agcatctatg ctaatcttaa
651 agctggtaga tgtcaaccag aggatctgaa tgggaagtgg tattgtggta
701 ataagtttga agagtgcgtg tttacggctg atagagccta tgccatggct
751 atacacagta tttatgacat tgatctaatg gacttggcca acgctttaga
801 agaaaaacgt ataagaataa tgagtggcac gttcctgctt tctgtggatc
851 tactgctggg gaaaaagcag gggagacttc caacgatgga tggtttcttc
901 gaggtggaag gtgattatgt gaaatatggt tttcataatg acaccaatcc
951 tggttacaag cacaaactga gtcagttgat gaagtatctt acgaaaacct
1001 ttgttactgc taaagggggt tcgatatatt atcttgaact gacagagttg
1051 cgaggtgacg tgatgttttt tactatgacg gacgcgacgg aggctaggat
1101 gaacggtgtg gttcaggacg agtctttcaa gtgcatacct atagaggaca
1151 acgggaatgt ggtgtttcct ttgtttgaag tggacaagcg tagcgatacg
1201 cttcgcttct cggagatttt gctgccccgt gattttgtgc aaagggcggt
1251 tgagtatacc ggccgtttga aagggaatca actcactgct gaaaacgtaa
1301 acacatatct gacatcgacc aataatacca ttattattgg cggttcgtca
1351 aaggaaaatg tgaacaaggt tgattcactg ctgatagcac agacaaccac
1401 gacattggtg gtctggactg aactgatgca cgcaaggcag aagcgagtta
1451 tggagttgct gaggttgcag atgaaggagg atgtggattt taagtctttg
1501 gcacatgctg cttttctgaa agtgttcggt aaggtaagtt tctaccaaaa
1551 ggcgttgagg agttttgcga attggatttc atactgtcat ggctctgatg
1601 ctatacattt tcgccctgtg ccactgtatg ttgaaataac cgacagagtg
1651 aagttgtgga aaacttatgc accgaatcag ggtttcgttt tggacatgga
1701 agatttggac gagaagataa aactgcatga gataaccgag agggaaaaat
1751 acgatgttag tagacacatt gtatctacta aacttggcga attggctact
1801 ggagattacg gtacatccga aaaagcttgt gatgtggtgt gcactgataa
1851 ccggagaaaa actgattttg gtgatctgtt ggagggagag gtggccacga
1901 acttcattga ctcttggtgc gagaaagatg atcattttaa cttttcttat
1951 gatggtgctg aatcaaagta cgtgtggtgt gcaaagttgc tgagaatggt
2001 gtgggatact ttgatccctc ccatggaatt tgcacccgtt tatgtggacg
2051 acaaggacgc gtcgattcgc attgcatcaa gaattgagaa gagtgagaaa
2101 aatgacgctg aggttactac tgatagtacc tctgggtttg tcggtgctga
2151 gaggaaagag tttgacgctg ctatggattt tctgacggtt gttgggagca
2201 aaaacacgga taaactgaac gctcagagaa cagaggtcgt tgctgtggct
2251 aacgcggtag tcgcgcagaa taagctgtac acggaatctg aggtgtctaa
2301 tgcagtgaag ctttgggctg atgttgatga cgaatttcta gaagaagaag
2351 agacaactgc tcccatatcg gacgttactg gtctcgcttc tgtaaatgaa
2401 gagatttttg agaatttgca attgggcagc tcgtctaatt ctacgccatc
2451 cgtcgtggca agagagaatc tgtctgtggg gaacgacatg ggtccctcgg
2501 ctatgaccag cgatgattgt tcgactgagg gtgaacttag ggaaaaatct
2551 tgggcatctt tggcagagga agagagcgat tcgtcttact atctaaaaac
2601 tgcgattatt tcgggtaaag tgcagaaaag tgcactacca aaagctccag
2651 acttttcgaa gtttgcgacg tttcaagcga aggcgaaaca ggaggctttg
2701 tggtacttac aatgcaagat cgtttctgat cgtacgacat tgcggagcat
2751 catagacgat catttgagag gtatgtttca caatgatact tgtgagttgc
2801 ctaaggattc agcttttttg gactacacga ctgataacgg tggtgcttgg
2851 atgtacggga aaccatctaa atttgggcac agttacggtg tgggtttttc
2901 attgaattcg aagcaggaga ttaccaagtg tgagttggtg aaactgatgt
2951 ggaactatga tggcaagggg cagataagtc aaaaacctgt gaacacaaaa
3001 gtttttccgt atctgttgct gagtgaattg acattcatga tgaacgaatt
3051 gctcattttc tgcaatttgc agaaagttat taggaagaag gaacggacga
3101 aacacaccct tattacttta cgggatggtg tcccgggttg cggcaaatct
3151 acttggattg ttgagaacgc aaaccccatg aaagatatgg tattgtctat
3201 gtgcaaggag gcgactgaag atttgaaaga aaaattttcg aagaggttga
3251 aatgcacgga atcggcgttg aggagggtgc gaactgtgga ttcttttctg
3301 atgcatgatt atgataaatt cagggcagca acagttcact ttgacgaagc
3351 tctgatggcg catgcaggaa tggtttactt ttgtgcggat attttgggtg
3401 caaaaaaggt gctgtgccaa ggagactcac aacagattcc ttttataaat
3451 cgtgttgaat ctatcacgct gaaatacgca aaattgcaga ttgatgatac
3501 ggagtatgtg agattgactt atcggtcacc tattgatgtt gcacactatc
3551 tcacgaagaa gtcttattat agtggaggta gggtgcttac gaagaacaca
3601 actttgaggt ctatgaacac tgttggccct cgcgatgcga agcctatgac
3651 atctgtacat tgtgttccct accagcgtga tactcaatat ctgacgttca
3701 ctcaatcgga gaaagctgac ctttataagg cactacgaaa cagggggccg
3751 gtaaatgtga ataccgtgca cgagacacag ggtaagacgt ttgacaatgt
3801 aatcgtggtg aggctgaaga cgacggaaaa tgagatttat cccggaggaa
3851 ggaaggctca accatatgag attgtggcta ctacgaggca cagacgttca
3901 ttggtgtact atactgcgat cgaagatagg ctgttttctg atatcaatga
3951 tatgagggat gtgatggaag acaaattgat gaagaacctt agctctgagt
4001 tggtgaaatg acggtttggg tcgaagtatg aatccatatt gatttgtgat
4051 agggaagtga gggtacccga tgtgggaaat tctgttattt tgcaggattt
4101 ttacgacagg gttctacctg gaaattctac agtggattca cacttcgacg
4151 ggtatgaagt ggcgacgaca gacattacta tagaggttga aaattgtaag
4201 gttcaccctc ataagaatgt gagagtttgg caagataaac ggggtctggt
4251 tcccgttttg cgtactgcaa tgccaccgaa aaggcagaat ggcatggtgg
4301 aagcactttt agcattgaag aaaagaaaca tggctgcacc gaaactacaa
4351 gaagctgtga atgaattcga ggtgatagat cggactatta gtcgcgctag
4401 atcaattttc ttgaatgaag acatgattga cgaatcgttg gtatcgacgc
4451 gtgagtcaaa tatgcgatgg tgggaaagac agtcacatac agctaggcag
4501 caattgaaaa gcgagtatag ggtactgcat gagttggact tgtgcagata
4551 ttcttactgt attaaaggcg atgaaaaacc aaagaatgat ctgacgcctc
4601 aacgcgaata tggtgctttg cagacagttg tttatcctga taagatcgtt
4651 aatgcgctgt tcggacctgt tatgaaggag ataaatgagc gtataaggat
4701 ggctttgaaa cctcatgtgg tttacagttc gaggatgaat gccgaggagt
4751 tgaatcggac tgtcgaattt ctggatccgg aagatgagta tgacgcattc
4801 gaaatagatt tttcaaaatt tgacaaatcg aaaacgtcat tgcacatacg
4851 agctgtaatt gagttgtata agctgtttgg tttggatgat atgttggcct
4901 tactttggga gaaatctcaa tgtcagacca ctgttattga caaagtaaac
4951 ggcattactg cttatttgtt gtaccagcag aaatctggca attgcgacac
5001 ttatggttct aacacgtggt cggccgcttt ggcgttgttg gagtctatgc
5051 cattggagaa agctaaattt atgatttttg gtggggatga ctctccgatt
5101 ttgtttccta aacaactctg cattgaggat ccgtgtagac gtttggcgtc
5151 tctgtggaac ttcgattgta agttgtttaa cttcaggcat aatatgtttt
5201 gtggtaagtt tttgttgaag atcgggaaca agtttaaatt cgctccagat
5251 ccgatgaagt tgttgacgaa gttgggacgc aaggatattg cagatggtaa
5301 attgctctct gagatttttg tttctatggg agacaattat ggctcttacc
5351 gggactatcg tattttggag caacttgcgg tggctgtgca agaaaggtac
5401 aggacgaatg aggaccctac cgcgatgttg atcactttga agaagtatat
5451 ttttgatttt aagttgttgg ctagtttgtt taattatagt ggtgagtttg
5501 aagtgtgtaa agtggggagg aactttgagt ggtgactcgc tgttctcgtt
5551 gtttttcttt tgtgtattct attgtgttaa acgttgtgct acagccatgg
5601 gttcaaagga tgtgaagggt gactctttcg aaagtgtgta taacaagatt
5651 ttggacttac aaactgaggg agatgttggt gcagacagtc ttaagaccaa
5701 tcgtcagagg agttttaata tcgagaacaa atatgttgaa aaggctctga
5751 ttcaacagga tattgcaaca aagatgagag acggatggac cacttggact
5801 aagactaata aggaggaagg aacgccttat aatatgtctt atagctgcgt
5851 actgctgaac gtcattccaa ctgtaccgcg aggttattct ggcacagttg
5901 agatttcgtt aattgattcg ggcctgtcac cgcttgaaaa tgttattccg
5951 gatcagactc agatgatgga acttgggaac ggaccgcatg tgatgtgtct
6001 tttcatgcac tatggtatac cgctcaacga tgaaggcaga gtgattaagt
6051 tgtcgtttaa aattggagca gaaatggctt caaagaagat gagtgttatg
6101 aatgcttact cctattggac gcaaaaacaa ggccatttat ctgtttacac
6151 tgaaccacag cgatcgacat gttcgaaact tttacttggt tacgacaaat
6201 cactgaaatt gaagactagg ggtgacgtgc ggcgttttgt ttcacggtca
6251 ctagcaacca ataatcttga gcaaagcgtt cctaagatgc ttcccaacag
6301 cattaatatt cttaaagaga acgtacctct tttcaaaaaa gagagcgtgc
6351 tggatttgac ggaacaggag agggagaagc agaaaaggct tgataccttg
6401 agaaatgtta atgaggcaca gagacgtaag agtgcacagg agacgcagaa
6451 gagaaatgat gatttgatta aggcgaatgt gcaaaagcaa aaggccaaac
6501 aatttgaaat tgatgaaaac cggaaaaatc actatgatgc ttctggtatg
6551 aagtttggtt cagttggaag tgactgagtc tggttttatt ttatatattt
6601 atatatgtat tgtggttttg ttgtgtggtt tattttcgct tatattgcta
6651 tattgcatgt gtgcgttgaa aatagcctaa cttgtcgggc agagacaagt
6701 cgttgccgtc acgatagacg gagccgctgg gattgcggat tataaatcga
6751 acaagcctat ttgtacgggt cgagtacaaa cgtggccatc acgatagatg
6801 gttctgtttt tcgaacagat gtaaatcgaa gacgtcgtgc agtacggtaa
6851 actgcacatc tatcctctag tttctattga tgtaattgaa aaaagatcaa
6901 tattttacga tgatgaggag cgactggtgg tcgcggtagc tatgacacag
6951 ctactaagag gggttcaaat ccccccccga accgg