Sequence of DPV Soil-borne cereal mosaic virus
Soil-borne rye mosaic virus strain C RNA2 20K protein, 84K protein, and 18K protein genes, complete cds.
ACC No: AF146281
Dated: 1999-12-21 | Length: 3623 | CRC: 1289882107
!!NA_SEQUENCE 1.0
ID AF146281 standard; genomic RNA; VRL; 3623 BP.
XX
AC AF146281;
XX
SV AF146281.1
XX
DT 21-DEC-1999 (Rel. 62, Created)
DT 21-DEC-1999 (Rel. 62, Last updated, Version 1)
XX
DE Soil-borne rye mosaic virus strain C RNA2 20K protein, 84K protein, and
DE 18K protein genes, complete cds.
XX
KW .
XX
OS Soil-borne cereal mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-3623
RX MEDLINE; 20068741.
RX PUBMED; 10603167.
RA Koenig R., Pleij C.W.A., Huth W.;
RT "Molecular characterization of a new furovirus mainly infecting rye";
RL Arch. Virol. 144(11):2125-2140(1999).
XX
RN [2]
RP 1-3623
RA Koenig R.;
RT ;
RL Submitted (28-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Pflanzenvirologie, Biologische Bundesanstalt fuer Land-und
RL Forstwirtschaft, Messeweg 11, Braunschweig D38104, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .3623
FT /chromosome="RNA2"
FT /db_xref="taxon:100887"
FT /mol_type="genomic RNA"
FT /organism="Soil-borne cereal mosaic virus"
FT /strain="C"
FT CDS 305. .2569
FT /codon_start=1
FT /db_xref="GOA:Q9JAD1"
FT /db_xref="UniProt/TrEMBL:Q9JAD1"
FT /note="coat protein; ORF2; readthrough protein"
FT /transl_except=(pos:833. .835,aa:OTHER)
FT /product="84K protein"
FT /protein_id="AAF18336.1"
FT /translation="MAVKNGYTGYNKELNLMASIHPFIRLSTLISQIEGWQATRASILT
FT HLGVMLNGVSKLGERNFFSRQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKG
FT EGSQTRNAKRGTTPTTNQVEGEEQGQTDQTLAISNALAEFMTFIHTKDFTMNECYTQDS
FT FEAKFNLKWEGTSXRDGVSGKLRARIVEDFQNRLVLADDLGVFPRRNLSGEVIRDEPEI
FT IYAELEDKLLSFESSVYHPKAVTMETEVSVLPKLQTDLETGNAEEDIETTVVTEVLIDE
FT ESSYFWLYFVFLLLSIFISCFIVLSRWFICFLGNRGGRGGPFFRKVATALWNARLWLLS
FT KAARRYGNLGIVRKRYTRAGMRRYLRDYNFQFDEWESVVDCAPSEALIVADQRLFVRAV
FT NKIVDLKGDFDAIEIVKKTFLNYGVRNYKVERWLDRHTIRSALGVLSDVTRDEVLTLVD
FT GMLSLENATLDEVLGCDVEGQRNGRYFKDIVALQFAFHLIGTPEFSDFVMAYKGTLYPC
FT YVEATKRHTSMLEQFHANEDQKRKNEKALEWLLMLGQGAFVFSAAVTAGVTIFKIHKWI
FT KSRMLLRALQMLPSVGGGGNEGGGRFSEEALNRFAVSQTPEERIEALHTDFDTATDNME
FT SFSPEDIQTEIKHVIQAHVDGTYHAADLPFLGDMSDAVVPAMADSVVDLSNVSNDVGSA
FT DTSVSSVTSKVRRRAVASNTRIYPSVGNVRYSDIKSPRVSGKSGISSMKMRITSRPMLA
FT S"
FT CDS 305. .835
FT /codon_start=1
FT /db_xref="GOA:Q9Q9Q4"
FT /db_xref="UniProt/TrEMBL:Q9Q9Q4"
FT /note="coat protein; ORF1"
FT /product="20K protein"
FT /protein_id="AAF18335.1"
FT /translation="MAVKNGYTGYNKELNLMASIHPFIRLSTLISQIEGWQATRASILT
FT HLGVMLNGVSKLGERNFFSRQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKG
FT EGSQTRNAKRGTTPTTNQVEGEEQGQTDQTLAISNALAEFMTFIHTKDFTMNECYTQDS
FT FEAKFNLKWEGTS"
FT CDS 2639. .3136
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q9Q9Q3"
FT /note="cysteine-rich protein; ORF3"
FT /product="18K protein"
FT /protein_id="AAF18337.1"
FT /translation="MSAYAFHSCDKCVDGPKNVVCVSKYRHSVYKVLGLSVVKCRLPAD
FT CGVNCGMPAAFVLEDGHPRLTLDGYCGEKHKGYVISGAWRHAQLRTLNDELDKLEKRGE
FT FLKTQIRVLSETANANTAPVYAPKKINRMKAEVQDVNVKIQDRSTALAGVMDAVALNLS
FT PK"
XX
SQ Sequence 3623 BP; 977 A; 614 C; 946 G; 1086 T; 0 other;
AF146281 Length: 3623 June 22, 2004 14:38 Type: N Check: 9345 ..
1 agtgttaact cttcttgtga tattaccttt cttaccagga taagaaataa
51 aatattttct gggttatcac tatcttgaaa cttaacagag actatcatct
101 cgctgctcta ggcctgcaat gcaataaatc ctaggtagtc agctgttagc
151 gtgtgacgtt gacggataga ggtattttgg ttcgctggat aagctaacga
201 gacttaaagg taaggtcgat agatccttac aaaaagctgc ggataaggtc
251 actgctgaaa gtactgattc gttgcaatcg aaagtggttg tgcagttacc
301 tcagatggct gtaaagaacg gatatacggg ttacaacaag gaattgaatt
351 tgatggcttc tattcatcct ttcattaggc tgagtacttt gataagtcag
401 attgaaggat ggcaagcaac acgagctagc atacttaccc atttaggtgt
451 aatgctcaat ggcgttagta agttaggtga gcgaaatttc ttctctagac
501 aaaaaagatt tgggacgcac actcaggacg gtgacgagat attctgtgac
551 cttggaggtg aggcagttat gcagatcatt accagactca cggtatcact
601 acaatccgcg aagggtgaag gttcccagac aagaaatgct aagagaggga
651 cgacaccgac taccaaccaa gttgagggtg aggaacaagg tcagactgat
701 cagacgttag ccatctcgaa tgcgctggct gaatttatga ctttcatcca
751 cactaaagat tttacgatga atgagtgtta cacgcaagac tcttttgaag
801 ccaaatttaa tttgaagtgg gaaggtacga gttgacggga cggcgtctcg
851 ggaaagttga gggcacgcat tgtcgaagat ttccagaata ggctggtttt
901 ggccgacgat ttgggtgttt ttccgagacg caatcttagc ggtgaggtga
951 taagagacga gcctgaaata atatatgcag aactagagga caagctcttg
1001 agctttgaga gttctgtata tcatcctaaa gctgtgacta tggagactga
1051 agtgtctgta ttaccgaaat tgcaaacgga tcttgaaaca ggtaacgctg
1101 aagaggacat tgagacaact gtagttactg aggtactcat tgatgaggaa
1151 agcagttact tctggttata cttcgtgttt ctcttgttat ctattttcat
1201 atcttgtttc attgtgttgt cgcgatggtt tatatgtttt cttggtaata
1251 gaggagggcg tggtggccct ttctttcgga aggtcgccac tgcattgtgg
1301 aacgcgcgac tatggctatt aagtaaggcg gccagacgtt acggcaatct
1351 tggaattgtg cgaaagagat atacacgtgc tggcatgcgc aggtacttgc
1401 gtgattataa tttccaattt gatgaatggg aaagcgtggt tgactgtgct
1451 ccgagtgaag ctctgatcgt tgcagatcag agattgtttg tgagagctgt
1501 gaacaagatt gtggatttaa agggtgattt tgatgctatt gaaattgtca
1551 agaagacttt cctgaattac ggagttcgta attacaaagt ggaaagatgg
1601 ttggacaggc atacaatacg ctcggcactt ggtgtactga gcgatgttac
1651 gagggacgaa gtacttacat tagttgatgg tatgctatca ttggagaacg
1701 ctacacttga tgaggtactg ggttgtgatg ttgagggtca acgaaatggc
1751 aggtacttta aggacattgt tgccttgcag tttgcttttc atcttattgg
1801 tacgcccgaa ttttccgact ttgtgatggc ttacaaaggt actttgtatc
1851 cctgttacgt ggaagcaact aagagacata cttcgatgtt ggaacagttc
1901 cacgctaacg aagatcagaa aagaaagaac gagaaggctt tagagtggtt
1951 gcttatgctg gggcaaggag ctttcgtttt ttccgctgct gtaacagctg
2001 gtgttacgat cttcaagatt cataaatgga taaaaagtcg tatgctctta
2051 agggctttgc agatgctacc gtctgttggt ggcggtggta atgaaggtgg
2101 tggaagattt tctgaggagg ctcttaacag atttgcagta agtcaaactc
2151 ctgaggaacg cattgaggcg ctgcatactg atttcgacac ggctactgat
2201 aacatggaga gtttttcacc ggaagacata cagactgaga ttaaacatgt
2251 tattcaagcc cacgttgatg gaacttatca cgcagcggac cttccttttc
2301 tgggcgacat gtctgacgct gttgttcctg ctatggcaga ttctgttgtc
2351 gatttgagta atgttagcaa tgatgtggga agtgcggata cgtctgtctc
2401 aagtgtgacc agtaaggtta gacgtcgtgc cgttgctagt aacacaagga
2451 tttacccgag tgttggtaat gttaggtata gtgatattaa gtcaccgagg
2501 gttagtggta aaagtggaat tagtagtatg aaaatgagaa tcactagtag
2551 gcctatgttg gcgtcctagt gtgttgtttt ttaaaatact tgttcacacc
2601 gctactgctg gtctttctcg gtttttcttc ctaacattat gtcggcttac
2651 gcttttcact cttgcgataa gtgtgttgat ggacccaaga acgttgtatg
2701 tgttagtaaa taccgtcata gtgtttataa ggttttgggt ctttctgttg
2751 ttaagtgtcg tcttcctgca gattgtggtg ttaattgtgg tatgcctgca
2801 gcttttgttc tcgaagatgg gcatcctagg ctaactcttg atggttactg
2851 tggtgagaaa cacaaaggtt atgtgatttc tggtgcttgg cgacatgcgc
2901 aacttcgtac tttaaacgat gaacttgaca agttggagaa gaggggggag
2951 tttttgaaaa ctcagataag agtgctcagt gaaactgcta atgctaacac
3001 tgctcctgtg tatgctccca agaagattaa tcgtatgaag gcggaggttc
3051 aggatgttaa tgtgaaaatt caggaccgta gtactgctct tgcaggagtc
3101 atggatgctg tcgcattgaa tttatcgccg aaatagttct ccacggaagt
3151 gtgaagccat atgatgagta cgttaacact gtatttacaa ctggtatgtg
3201 tatactggaa taggtaacca ggataaagaa acctagcgaa aatgtcctac
3251 caaaacatta cgtattgtgg ttttgttgtg tggtttattt tgcttatatt
3301 gttatgttgt atgtgtgtgt tgaaaatagt ctaacttgtc gggcagagac
3351 aagtcgtttc cgtcacgata gacggagccg ctggggttgc ggattataaa
3401 tcgaacaagc ctatttgtac gggtcgagta caaacgtggc catcacgata
3451 gatggttctg tttttcgaac agatgtaaat cgaaggcgtc gtgcagtacg
3501 gtaaactgca catctatcct ctagtttcta ttgatgtaat tgaaaaaaga
3551 tcaatatttt acgatgatga ggagcgactg gtggtcgcgg tagctatgac
3601 acagctacta agaggggttc aaa