Sequence of DPV Soil-borne cereal mosaic virus
Soil-borne rye mosaic virus strain O RNA2 20K protein, 84K protein, and 18K protein genes, complete cds.
ACC No: AF146283
Dated: 1999-12-21 | Length: 3643 | CRC: -1490120043
!!NA_SEQUENCE 1.0
ID AF146283 standard; genomic RNA; VRL; 3643 BP.
XX
AC AF146283;
XX
SV AF146283.1
XX
DT 21-DEC-1999 (Rel. 62, Created)
DT 21-DEC-1999 (Rel. 62, Last updated, Version 1)
XX
DE Soil-borne rye mosaic virus strain O RNA2 20K protein, 84K protein, and
DE 18K protein genes, complete cds.
XX
KW .
XX
OS Soil-borne cereal mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-3643
RX MEDLINE; 20068741.
RX PUBMED; 10603167.
RA Koenig R., Pleij C.W.A., Huth W.;
RT "Molecular characterization of a new furovirus mainly infecting rye";
RL Arch. Virol. 144(11):2125-2140(1999).
XX
RN [2]
RP 1-3643
RA Koenig R.;
RT ;
RL Submitted (28-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Pflanzenvirologie, Biologische Bundesanstalt fuer Land-und
RL Forstwirtschaft, Messeweg 11, Braunschweig D38104, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .3643
FT /chromosome="RNA2"
FT /db_xref="taxon:100887"
FT /mol_type="genomic RNA"
FT /organism="Soil-borne cereal mosaic virus"
FT /strain="O"
FT CDS 309. .2573
FT /codon_start=1
FT /db_xref="GOA:Q9JAC9"
FT /db_xref="UniProt/TrEMBL:Q9JAC9"
FT /note="coat protein; ORF2; readthrough protein"
FT /transl_except=(pos:837. .839,aa:OTHER)
FT /product="84K protein"
FT /protein_id="AAF18342.1"
FT /translation="MAVKNGYTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILT
FT HLGIMLNGVSKLGERNFFSRQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKG
FT EGSQTRNAKRGTTPTTNQVEGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDS
FT FEAKFNLKWEGTSXRDGVSGKLRARIVEDFQNRLVLADDLGVFPRRNLSGEVIRDEPEI
FT IYAELEDKLLSFESSVYHPKAVTMETEVSVLPKLQMDLETGNAEEDIETTVVTEVLIDE
FT ESSYFWLYLVFLLLSILISCFIALSRWFICFLGNRGGRGGPLFRKIATALWSARLWLLS
FT KAARRYGNLGIVRKRYTRAGMRRYLRDYNFQFDEWESVVDCAPSEALIVADQRMFVRAV
FT NKIVDLKGDFDAIEIVKKTFLNYGVRNYKVERWLNRHTIRSALGVLSDVTRREVLTLTD
FT GMLSLENATLDEVLGCDVESQRNSMYFKDIVALQFAFHLIGTPEFSDFVMAYKGTLYPC
FT YVEATKRHTSILEQFHVNEDQKRRNEKALEWLLMLGQGAFVFSAAVTAGVTIFKIHKWI
FT KSRMLLRALQMLPSVGGGGNEGGGRFSEEALNRFAASQTLEERIEALHTDFDTAADNME
FT SFSPEDMQAEIRHVIQAHVDGTYHAADLPFLGDMSDAVVPAMADSVVDLGNVSSDVGSA
FT DTSVSSVTSKVRRRAIASNTRIYPSVGNVRYSDIKSPRVSGKSGISSMKMKITSRPMLA
FT S"
FT CDS 309. .839
FT /codon_start=1
FT /db_xref="GOA:Q9Q9Q0"
FT /db_xref="UniProt/TrEMBL:Q9Q9Q0"
FT /note="coat protein; ORF1"
FT /product="20K protein"
FT /protein_id="AAF18341.1"
FT /translation="MAVKNGYTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILT
FT HLGIMLNGVSKLGERNFFSRQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKG
FT EGSQTRNAKRGTTPTTNQVEGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDS
FT FEAKFNLKWEGTS"
FT CDS 2643. .3140
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q9Q9P9"
FT /note="cysteine-rich protein; ORF3"
FT /product="18K protein"
FT /protein_id="AAF18343.1"
FT /translation="MSACAFHSCDKCVDGPKNVVCVSKYRHSVYKVLGLSVVKCRLPAD
FT CGVNCGMPAAFVLEDGHPRLTLDGYCGEKHKGYVISGAWRHAQLRTLNDELDKLEKRGE
FT FLKTQIRVLSETANANTAPVYAPKKINRMKAEVQDVNVKIQDRSTALAGVMDAVALNLS
FT PK"
XX
SQ Sequence 3643 BP; 982 A; 633 C; 952 G; 1076 T; 0 other;
AF146283 Length: 3643 June 22, 2004 14:38 Type: N Check: 3181 ..
1 agtgttaact cttcttgtga tatttacctt tcttaccagg ataagaaata
51 aaatattttc tgggttatca ttatcttgaa acttagcaga gactaacatc
101 tcgctgctct aggcatgcaa ctttgcaata aatcctaggt agtcagctgt
151 tagcgtgtga cgttgaagga tagtggtatt tcggttcgct ggataagctc
201 acgagactta aaggtgaggt cgataagtcc ttacaaaagg ctgcggataa
251 ggttactgct gaaagtactg aatcgtcgca atcgaaagtg gttgtgcagt
301 tacctcagat ggctgtcaag aacggttata cgggttacaa caaggaattg
351 aatttgatgg cttctattca tcctttcatt aggctgggta ctttgataag
401 tcagatagaa ggatggcaag caacacgagc tagcatactt actcatttag
451 gtataatgct caacggcgtt agtaagttag gtgagcgaaa tttcttctcc
501 agacagaaaa gatttgggac acacactcag gatggtgacg agatattttg
551 cgaccttgga ggtgaggcag ttatgcagat catcaccaga ctcacagtat
601 cactacaatc cgcaaagggt gagggttccc agaccagaaa tgctaagaga
651 gggacgacac cgactaccaa ccaagttgag ggtgaggagc aaggtcaaac
701 tgatcagacg ttagccatct cgaatgcgct ggctgaattt atgactttca
751 tccacactaa agatttcacg acgaatgagt gttacacgca agactctttt
801 gaagccaaat ttaatttgaa gtgggaaggt acgagttgac gggacggcgt
851 ctcgggaaag ttgagggcac gcattgtcga agatttccag aataggctgg
901 ttttggccga cgatttgggt gtttttccga gacgcaatct tagcggtgag
951 gtgataaggg acgagcctga aataatatat gcagaactag aggacaagct
1001 cttgagcttt gagagttctg tatatcatcc taaagctgtg actatggaga
1051 ccgaagtgtc tgtattgccg aaattgcaaa tggatcttga aacaggtaac
1101 gctgaagaag acattgagac aactgtagtt actgaggtac tcatcgatga
1151 ggagagcagt tacttttggt tatacctcgt atttctctta ttgtctatcc
1201 ttatatcgtg tttcattgcg ctgtcgcgat ggtttatatg ttttctcggt
1251 aatagaggag ggcgcggtgg ccctctcttt cgaaaaatcg ccactgcatt
1301 gtggagcgca cgactatggc tgttaagtaa ggcggccaga cgttacggta
1351 atcttggaat cgtacgaaag agatatacac gtgctggcat gcgcaggtac
1401 ttgcgtgatt ataatttcca atttgatgaa tgggaaagcg tggttgactg
1451 tgctccgagt gaagctctaa tcgtcgcaga tcagagaatg tttgtgaggg
1501 ctgtgaacaa gattgtggat ttaaagggtg attttgatgc tattgaaatt
1551 gtcaagaaga ctttcctgaa ttacggagtc cgcaattaca aggtggaaag
1601 atggttgaac aggcatacaa tacgctctgc actcggtgtg ctgagcgatg
1651 ttacgaggag agaagtactt acattaactg atggtatgct atcattggag
1701 aacgctacgc ttgatgaggt actggggtgt gatgttgaga gtcaacgaaa
1751 tagcatgtac tttaaggaca ttgttgcctt gcagtttgct tttcatctta
1801 ttggtacacc agaattctcc gactttgtga tggcttacaa aggtactttg
1851 tatccttgtt atgtggaagc aactaagaga catacttcga tattggagca
1901 gtttcatgtt aacgaagatc agaagagaag aaatgagaag gcgttggaat
1951 ggttgcttat gctggggcaa ggtgctttcg ttttttctgc cgctgtaaca
2001 gctggcgtta cgatcttcaa gattcataaa tggataaaaa gtcgtatgct
2051 cttaagggct ctgcagatgc taccgtctgt tgggggtggt ggtaacgaag
2101 gtggcggtag attttctgag gaagctctaa acagatttgc ggcaagtcaa
2151 actcttgagg aacgtattga ggctctgcat actgatttcg acacggctgc
2201 tgataacatg gaaagttttt caccagaaga catgcaggct gagattagac
2251 atgttattca ggctcacgtc gatggaactt atcacgcagc agatcttcct
2301 tttctgggcg acatgtctga tgctgttgtt cctgctatgg cagattctgt
2351 tgtcgatttg ggtaatgtta gtagtgatgt gggtagtgcg gatacgtctg
2401 tctcaagtgt gactagtaag gttagacgtc gtgctattgc tagcaacaca
2451 aggatttacc cgagtgttgg taatgttagg tatagtgata ttaagtcacc
2501 gagggttagt ggaaaaagtg gaattagtag tatgaaaatg aaaatcacta
2551 gtaggcctat gttggcgtcc tagtgtgttg tttttaaaaa tacttgttca
2601 cactattacc gctagtcttt ctcggttttt cttcctaaca ttatgtcggc
2651 ttgcgctttt cactcttgtg acaagtgtgt tgatggaccc aagaacgttg
2701 tatgtgttag taaataccgt catagtgttt ataaggtttt gggcctctct
2751 gttgttaagt gtcgtctgcc tgcagattgt ggtgttaatt gtggtatgcc
2801 tgcagctttt gttctcgaag atgggcatcc tagactaact cttgatggtt
2851 actgtggtga gaaacacaaa ggttacgtga tttctggtgc ttggcgacat
2901 gcgcaacttc gtactttaaa tgatgaactt gataagttgg agaagagggg
2951 ggagtttttg aaaactcaga taagagtgct cagtgaaact gctaacgcta
3001 acactgctcc tgtatatgct cccaagaaaa ttaatcgtat gaaggcggaa
3051 gttcaggatg ttaatgtaaa aatccaggac cgtagtactg ctcttgcagg
3101 tgtcatggat gctgtcgcgt tgaatttatc accgaaatag ttcgccgcgg
3151 aagtgtggag ccatatgatg agtacgttga cgttatattt gtataatggg
3201 tatatgtgtg tactggaaaa ggtaaccagg ataaagaacc ctagcgaaaa
3251 tgtcctacca aaacattatt gtggttttgt tgtgtggttt attttgctta
3301 tattgctatg ttgcatgtgt gtgttaaaaa tagtctaaca tgtcgggcag
3351 agacatgtcg ttgccgtcac gatagacgga gccgctggga ttgcggatta
3401 taaatcgaac aagcctattt gtacgggtcg agtacaaacg tggccatcac
3451 gatagatggt tctgtttttc gaacagatgt aaatcggagg cgtcgtgcag
3501 tacggtaaac tgcacatcta tcctctagtt tctattgatg taattgaaaa
3551 aagatcaata ttttacgatg atgaggagcg actggtggtc gcggtagctt
3601 tgacacagct actaagaggg gttcaaatcc ccccccgaac cgg