Sequence of DPV Cardamom mosaic virus

Cardamom mosaic virus polyprotein gene, partial cds.

ACC No: AF189125

Dated: 2002-05-07 | Length: 1794 | CRC: 980201246

                !!NA_SEQUENCE 1.0
ID   AF189125   standard; RNA; VRL; 1794 BP.
XX
AC   AF189125;
XX
SV   AF189125.1
XX
DT   04-OCT-1999 (Rel. 61, Created)
DT   07-MAY-2002 (Rel. 71, Last updated, Version 3)
XX
DE   Cardamom mosaic virus polyprotein gene, partial cds.
XX
KW   .
XX
OS   cardamom mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus; Maclura mosaic virus.
XX
RN   [1]
RP   1-1794
RX   MEDLINE; 21440118.
RX   PUBMED; 11556406.
RA   Jacob T., Usha R.;
RT   "3'-Terminal sequence analysis of the RNA genome of the Indian isolate of
RT   cardamom mosaic virus: a new member of genus Macluravirus of potyviridae";
RL   Virus Genes 23(1):81-88(2001).
XX
RN   [2]
RP   1-1794
RA   Usha R., Jacob T.;
RT   ;
RL   Submitted (23-SEP-1999) to the EMBL/GenBank/DDBJ databases.
RL   Plant Biotechnology, Madurai Kamaraj University, School of Biotechnology,
RL   Madurai, Tamil Nadu 625021, India
XX
DR   SPTREMBL; Q9QD49; Q9QD49.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1794
FT                   /country="India: Coorg region"
FT                   /db_xref="taxon:104637"
FT                   /note="mosaic disease"
FT                   /organism="cardamom mosaic virus"
FT                   /isolate="Yeslur"
FT   CDS             <1. .1587
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9QD49"
FT                   /note="partial NIb and complete coat protein"
FT                   /product="polyprotein"
FT                   /protein_id="AAF01060.1"
FT                   /translation="GNNIGQPSTVVDNTLILMMSFYYAYIMKTQDFDCEHIHKRMKFVC
FT                   NGDDNKFSLAPSFVKEFGGEFTTEIKQLGLTYEFDDLTDDITENPYMSLTMVRTSSGIG
FT                   FSLHPSRVIAIVQWIKKGDIIQATQAAFAAMIEAYNDPWLFSILASLPGMVAHEYKDAL
FT                   NFARVNGIFGVVYFDPCQVHALHYGTPTVNEFEECESESCIDDDDFEAIEYCSQQFQMD
FT                   LVGTPTAPRQGNTTVPSTSSGTTGVTPPGGSGTRAAPLAPMTGQTSVVSPPRPVEEPDT
FT                   QLQESTLGGGDDDADIQWRIPPTPRRLSHFNNPRVKGKRIWNRKIINSIAKEQFTQSSQ
FT                   LATTLQFEKWAEDVRKSLGTPNEEDFQIYLTSWCLWCANNGTSSEVDVNQNMEIHSGGK
FT                   YSTIPIAIFVEPAVQNGGLRKIMRHLSDITSQILAKGGKMTAWGTKRGYTQLAMIPYAF
FT                   DFCVQTNGMPKTVREQLNQGKAAAIGSGYQRVMLLDGKVQRSKTSYERHVDTDIDEFEH
FT                   GSTSEPRATLY"
XX
SQ   Sequence 1794 BP; 544 A; 366 C; 418 G; 466 T; 0 other;

  AF189125  Length: 1794  May 21, 2002 09:06  Type: N  Check: 2094  ..

       1  gggaacaata ttgggcagcc aagtacagta gtcgacaaca ccttaatttt
      51  aatgatgtcc ttttattacg cttacatcat gaagacacaa gatttcgatt
     101  gtgagcacat acataaacgg atgaaattcg tctgtaatgg ggacgataac
     151  aaattctcac tggccccaag cttcgtcaag gagtttgggg gagagttcac
     201  aactgagatt aagcaacttg gtttgacgta tgaattcgat gatctcaccg
     251  acgatataac ggagaatcca tacatgagtt taacaatggt gcggacgtcg
     301  agtggcattg gtttttctct gcatccatct agagtcattg caattgttca
     351  gtggatcaaa aagggagata ttattcaagc aacgcaagca gcatttgcag
     401  caatgattga ggcatacaat gacccatggc tctttagtat tcttgcatct
     451  ttacctggta tggttgctca tgagtataaa gatgctttga actttgcgag
     501  ggtcaatggt atttttggag tcgtttactt tgatccatgt caagttcatg
     551  cactacacta tggtactcca acagtcaatg aatttgagga atgtgagagc
     601  gagagttgca ttgatgacga tgattttgag gctatcgaat attgttctca
     651  gcagtttcaa atggatttag taggcacgcc aacagcacca agacaaggca
     701  acacaacagt gccatcaact tcatctggca cgactggtgt caccccacct
     751  ggtggtagtg gaacacgcgc agcaccgctt gcaccaatga caggacagac
     801  aagtgttgtc agtccaccac gaccagtaga agaacctgac actcaattgc
     851  aagaatcaac acttggtggt ggcgatgatg acgcagacat tcaatggagg
     901  atacccccaa caccgagaag gctgagccac tttaacaacc cacgagtcaa
     951  aggaaagaga atctggaata ggaaaattat caacagcatt gcaaaagagc
    1001  aattcacaca atcatcacag ttggcaacca ccttgcaatt tgaaaagtgg
    1051  gctgaggatg ttcggaaaag tctcggtaca cccaatgaag aagattttca
    1101  aatttatctc acatcatggt gtttatggtg tgccaataat ggcacatcat
    1151  cagaggttga tgtcaaccag aacatggaga ttcattcagg tgggaagtac
    1201  tcgacaatac caattgccat ctttgttgag ccagcagtgc aaaatggcgg
    1251  gcttcggaaa atcatgagac acctcagcga cataacatca caaatactag
    1301  ccaaaggtgg aaaaatgaca gcatggggaa cgaagagggg ttacacgcaa
    1351  ctcgcaatga taccttatgc ttttgatttt tgtgttcaga caaatgggat
    1401  gcccaaaaca gttcgtgagc agctaaatca agggaaagct gctgcaattg
    1451  gttcaggcta ccaacgagtc atgcttctgg atgggaaggt gcaacgcagc
    1501  aagacgagtt atgaaaggca tgtcgacact gatattgacg aatttgaaca
    1551  cggctccacg agtgagccac gagcaactct atattgagca tatgttgatg
    1601  tcaatttagt gtgttttaaa gttcatttta ataaatgttt aataatccct
    1651  acctgctgca tctataggtt caatgggagt ttttgtgggt tttcttccaa
    1701  cgcctagcaa ccctcaatgt agcgtttaag gctgctctgg atgagcgcct
    1751  ggctgcacgc ttgtgcagtt tatcctatta ccatagaagg ttat