Sequence of DPV Tobacco vein clearing virus
Tobacco vein-clearing virus, complete genome.
ACC No: AF190123
Dated: 2005-04-15 | Length: 7767 | CRC: 1346013891
!!NA_SEQUENCE 1.0
ID AF190123 standard; genomic DNA; VRL; 7767 BP.
XX
AC AF190123;
XX
SV AF190123.1
XX
DT 15-NOV-1999 (Rel. 61, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Tobacco vein-clearing virus, complete genome.
XX
KW .
XX
OS Tobacco vein-clearing virus
OC Viruses; Retroid viruses; Caulimoviridae.
XX
RN [1]
RP 1-7767
RX MEDLINE; 20274003.
RX PUBMED; 10811941.
RA Lockhart B.E., Menke J., Dahal G., Olszewski N.E.;
RT "Characterization and genomic analysis of tobacco vein clearing virus, a
RT plant pararetrovirus that is transmitted vertically and related to
RT sequences integrated in the host genome";
RL J. Gen. Virol. 81(Pt 6):1579-1585(2000).
XX
RN [2]
RP 1-7767
RA Lockhart B.E., Menke J., Dahal G., Olszewski N.;
RT ;
RL Submitted (25-SEP-1999) to the EMBL/GenBank/DDBJ databases.
RL Plant Biology, University of Minnesota, 220 Biological Sciences Center, St.
RL Paul, MN 55108, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7767
FT /db_xref="taxon:107324"
FT /mol_type="genomic DNA"
FT /organism="Tobacco vein-clearing virus"
FT /specific_host="Nicotiana edwardsonii"
FT CDS 416. .2155
FT /codon_start=1
FT /db_xref="GOA:Q9QD06"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001988"
FT /db_xref="UniProt/TrEMBL:Q9QD06"
FT /note="ORF 1"
FT /product="putative coat protein"
FT /protein_id="AAF08287.1"
FT /translation="MNKEEFAIDEKTYENQDGLKIKIIFSNLGRRYKKIGDQIYLMIEK
FT ETARLEDSLTAMTRIIKENEEIDKKREIEIIRNQANKEIQQLEETKNTKIIALEKELNM
FT LKLLYENKQREKDKEIELTDEINKFKQKLQPEENLRIEEIDNNIDDQKSELSEISETYT
FT EILENIEKTKNLEINTGDVNMDEKPSTSGIKNPKELNPSYYTVSYEQSDRNNTLWNSRL
FT NKKWTPKPIHEQYNFLDLDCVEDINKTIQLWIGYISKQLIDNKIGITETPGYIERTLIG
FT TVKLWLHNLTKESIDTLRSNKKFNGDMATTSMEILYKYEIAIRNEFSSMTTETEEQHKE
FT KQINRNLMTKLAICNMCYIDEYTCAFREYYYKGTYNTEEGREIRKLYFTKLPEPFSSKI
FT IKDWNEAGLTDTLGARIKFLQQWFVQLCEKYKEEIKMEKILIKNLKCCKNKTAPQFGCT
FT DKYNKKWKTKKYKKHRSKYKYKKPRKRYYVKNYQAKKPFRPKKKLTECTCYNCGKLGHI
FT AKDCKAPKNPKKKQITEIIIDDEEYMQMEYIDYELDSEDSIYEISDSDDEIDSEITEEE
FT DEI"
FT CDS 2155. .3414
FT /codon_start=1
FT /db_xref="GOA:Q9QD05"
FT /db_xref="InterPro:IPR002626"
FT /db_xref="UniProt/TrEMBL:Q9QD05"
FT /note="ORF 2"
FT /product="putative cell-to-cell movement protein"
FT /protein_id="AAF08288.1"
FT /translation="MTEKEIKVVAREEYQNEESSEQKIIFDNNIFEQIKGKELDLSVEK
FT IFEVPTIKNWFKRQKEEYYVVSQKEHIIDCKYTGGKAKIPIINKRIINKEIQDIKAKNP
FT IKYVHLGGTEILIKACFREGIDTPIEIYLADDRIIQPIEKSIISAIKGNLIYQKFKFII
FT SANYSVALNDRNIDKSLVLYWKMSGIELAPGSKVFTARCKNLYVLTTKHKIAAKNKINK
FT IKIENPFERIVTVIDNNEYSYKEIDMEEDLEIVKERLSTSSIPKQLTHETPTSSRISTS
FT KREYIIPKNLARNTIEEIKPYHYYITGIMEQRKYQILINTGQEENYIIRELVAESEIIT
FT TEQLCPELPKELIINEEITEKEIIIGGIPLIIQFKIYQGNENITLGIKWLERLKPYNLE
FT DKQLTITYKNKKVIIKRTEE"
FT CDS 3411. .5318
FT /codon_start=1
FT /db_xref="GOA:Q9QD04"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR000588"
FT /db_xref="UniProt/TrEMBL:Q9QD04"
FT /note="ORF 3; contains aspartic protease, reverse
FT transcriptase and RNAse H"
FT /product="polyprotein"
FT /protein_id="AAF08289.1"
FT /translation="MKIYILAKIIVEGYYNRYYTPMIDTGAEANICKYNCLPTDKWEKL
FT KTPMVVTGFNNEGSMINYKARNVKIQIWDKILTIEEIYNFEFTTKDMLLGMPFLEKLYP
FT HIITKTHWWFTTPCKNKVGAKRVNNKQRKTTEWIRGSEKITQKLENINKNTTTQLEIII
FT FTIDKVKIIQKKLEKLYNDNPLQGWEKHKTKVKIELIEENSIITQKPLKYNFNDLTEFK
FT IHIKDLLDNKYIQESNSKHTSPAFIVNKHSEQKRGKSRMVIDYRNLNAKTKTYNYPIPN
FT KILKIRQIQGYNYFSKFDCKSGFYHLKLEDESKKLTAFTVPQGFYEWNVLPFGYKNAPG
FT RYQHFMDNYFNQLENCIVYIDDILLYSRTQDEHIKLLEKFAHIIENSGISLSKTKAEIM
FT KNQIEFLGIQIDKNGIKMQTHIVQKIINLDENIDTKKKLQSFLGIVNQVREYIPKLAEN
FT LKPLQKKLKKDVEYSFDEKDKEQIKKIKILCKKLPKLYFPDENKKFTYIVETDSSNYSY
FT GGVLKYRYNKEKIEHHCRYYSGSYTEPQEKWEINRKELFALYKCLLAFEPYIVYTRFIV
FT RTDNTQVKWWITRKVQDSVTTKEIRRLVLNILNFTFTIEIINTNKNVVADYLSRQSYPN
FT "
FT CDS 5275. .6528
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q9QD03"
FT /note="ORF 4"
FT /product="putative transactivator factor"
FT /protein_id="AAF08290.1"
FT /translation="MLLQIIYQDKATQTDPDNTMENLLLAMTTLCKKVESMDEEIQIMR
FT KTASSQQHDSKNAELRQSEVSKIPELEGDVEKHLKTHNGLLNTVAGSSTTSSSSARKKE
FT DIKPRYTNINMNNLFSKPFVQRNTQDTQKEIFLPPQVNTYKESLNQTKKTYNHITRTYI
FT DNIHKIQNFLNKNPRSQSTQNPNEDYITHHLTGYNKLIALPNTSAKLVATCYNYGLLDT
FT VYTQTGQEIANIPELYKAFMQYKRITKGTLFYVRFYSATAEILYEEIKPIIQVIKIGLT
FT REMIIPEKIEEQEEIEKVNIPEFYANKRIIGISTILNELANNYLNQNAIWSYYSREQTM
FT IYSNCRDIREADMEELRQWVLSLLKPEQPTTTRAIRRNFISPDLLTRYCKLISHKYPDH
FT LCSKCKGEDNIVPDVQLE"
XX
SQ Sequence 7767 BP; 3729 A; 959 C; 1150 G; 1929 T; 0 other;
AF190123 Length: 7767 April 19, 2005 08:52 Type: N Check: 977 ..
1 tggtatcaga gccagtacac aaaaagaaac acatcaagtt aataaagaag
51 accaaataag aaacagtgta agaaaaacaa acaagaaact aagaaagtta
101 tactctgaat ataaaaaatt acacataaca aagatagata ataataggtt
151 agaacaacta atagatatca tatctaatac agaatataaa tatatccagt
201 atttgaaaaa acagtatgaa caaggaagaa tataaacaac aactttttga
251 aaaaattaca gaaaaaagac aagaattacg acatagacaa gataggctta
301 agaataatat atttgctgga acttgccaga aatctttact agttcaaaga
351 aaaattatat taaatttaca aatacaaata caacagtttg aatatatact
401 ccaacataac ctataatgaa taaagaagaa tttgcgatag atgaaaagac
451 atatgaaaac caagatggat tgaaaataaa gataatattt tcaaatctag
501 gtagaagata taaaaaaata ggagaccaaa tatacctaat gatagaaaaa
551 gaaacagcaa gattagaaga tagcctgaca gccatgacaa gaataattaa
601 ggaaaatgaa gaaattgata aaaagaggga aattgaaatt atcagaaatc
651 aagcaaataa ggaaatacaa caattggaag aaaccaagaa tacaaaaatt
701 atagcattag aaaaagaatt aaatatgtta aaattactat atgaaaataa
751 acaaagagag aaagataaag aaatagaatt aacggatgag ataaataaat
801 tcaaacaaaa attacaacca gaagaaaacc tcagaattga agaaatagat
851 aataatatag atgaccaaaa gtcagagcta agcgaaataa gtgaaacata
901 tacagaaatt ttagaaaata tagaaaaaac aaaaaattta gaaataaata
951 caggggatgt aaatatggat gaaaaaccta gcacatcagg tataaagaat
1001 ccaaaagaat taaacccaag ttattataca gttagttatg aacaatctga
1051 tagaaataat acactatgga atagtagact aaataaaaaa tggacaccaa
1101 aaccaataca tgagcaatat aactttttag atttagattg tgtagaggat
1151 ataaataaaa caatccaact atggatagga tatatatcta aacaattaat
1201 agataataaa ataggaataa cagaaacacc aggatatata gaaaggacac
1251 ttatagggac agtaaaatta tggttacata atttaacaaa agaaagtata
1301 gatactttaa gaagtaataa aaaatttaat ggtgacatgg caacaacgag
1351 tatggaaata ttatacaaat atgaaatagc cataagaaac gaatttagta
1401 gtatgactac agaaacagaa gaacaacata aggaaaaaca aataaataga
1451 aacctaatga caaaattagc aatatgtaat atgtgctata tagatgaata
1501 tacttgtgca tttagagaat attattataa aggaacatat aatacagaag
1551 aaggcagaga aataagaaaa ttatatttca caaaattacc agaacctttt
1601 agttcaaaaa taataaagga ttggaatgaa gcaggattaa cagatacttt
1651 aggagctagg ataaaatttt tacaacaatg gtttgtacaa ttatgtgaga
1701 aatataaaga agaaataaaa atggaaaaaa tattaataaa aaacttaaaa
1751 tgttgtaaaa ataaaacagc accacaattt ggatgtacag ataaatataa
1801 caaaaaatgg aaaacaaaga aatataaaaa acataggtca aagtataaat
1851 ataaaaaacc aagaaaaaga tattatgtaa aaaattatca ggctaaaaaa
1901 ccatttagac caaaaaagaa actaacagaa tgtacttgtt ataactgtgg
1951 aaaattagga catatagcta aagactgcaa agcacctaaa aacccaaaga
2001 aaaaacaaat aactgaaatt ataattgatg atgaagaata tatgcagatg
2051 gaatatatag attatgaact agatagtgaa gacagtatat atgaaatatc
2101 agattcagat gatgagatag atagtgaaat aactgaagaa gaagatgaaa
2151 tctaatgact gaaaaagaaa taaaagtagt agcacgagaa gaatatcaaa
2201 atgaagaatc ctcagaacaa aaaattatat ttgataataa tatatttgaa
2251 caaataaaag gaaaagaatt agaccttagt gtcgaaaaaa tatttgaagt
2301 acctacgata aaaaattggt tcaaaagaca aaaagaagaa tactacgtag
2351 ttagccaaaa agaacatata attgattgca aatatacagg aggtaaggcc
2401 aaaataccaa taataaacaa aagaataata aataaagaaa tacaagatat
2451 aaaggcaaaa aacccaatta agtatgtaca cttaggagga actgaaatat
2501 taataaaagc atgttttaga gaaggaatag atacccctat agaaatatat
2551 ctagcagatg atagaataat ccaacctata gaaaaaagca taataagtgc
2601 aataaaagga aatcttatat atcaaaagtt taaatttata ataagcgcca
2651 actattcagt agcactaaat gatagaaata tagataaatc attagtatta
2701 tactggaaga tgtcaggaat agagttagca cccggaagta aagtatttac
2751 agccagatgt aagaacctat acgtattaac aacaaaacat aaaatagcag
2801 cgaaaaataa aattaataaa atcaaaatag aaaacccgtt tgaaagaata
2851 gttacagtta ttgacaataa tgaatatagc tataaagaaa ttgacatgga
2901 agaagattta gaaatagtaa aagaaagatt aagtacatca agtataccaa
2951 aacaattaac tcatgaaaca ccaacatcat caagaataag tacatcgaaa
3001 agagaatata taatcccaaa aaatttagcc agaaacacaa tagaagaaat
3051 aaagccatat cattattata taactggaat tatggaacaa cgaaaatatc
3101 aaatattaat aaacacagga caggaagaaa attatatcat aagagaatta
3151 gtagcagaaa gtgaaataat aactactgaa caactatgcc ctgaattacc
3201 taaagaatta ataataaatg aagaaataac agaaaaagaa ataattattg
3251 gaggaatacc tctaataata caatttaaaa tatatcaagg aaacgaaaat
3301 attacactag gaataaaatg gttagaaaga ttaaaaccat ataatttaga
3351 agataagcaa ttaactataa catataagaa taaaaaagta ataataaaaa
3401 gaacagaaga atgaaaatat acatacttgc aaaaatcata gtagaaggat
3451 attataatag atactataca ccaatgatag atacaggagc agaagctaat
3501 atatgtaaat ataattgttt accaacagat aaatgggaaa aattaaaaac
3551 acctatggta gtaacaggat ttaataatga aggtagtatg attaactaca
3601 aagctagaaa cgtaaaaata caaatatggg ataaaatatt aactatagaa
3651 gaaatatata actttgagtt taccacaaaa gatatgttat taggaatgcc
3701 attcttagaa aagttatacc cacatataat aacaaaaaca cactggtggt
3751 ttaccacacc atgtaaaaat aaagtaggag ctaaaagagt aaataataaa
3801 caacgaaaaa ctacagaatg gatacgaggc agtgaaaaga tcacacaaaa
3851 attagaaaat ataaataaaa acacaactac ccaattagaa attatcatat
3901 ttacaataga taaagtaaag ataatccaga aaaaattaga aaaattatat
3951 aatgataacc ctctacaagg atgggagaaa cataaaacaa aagtaaaaat
4001 agaactaatt gaagagaata gtataataac acaaaaacct ctaaaatata
4051 actttaatga tttaacagaa tttaaaatac atataaaaga tttattggat
4101 aataaatata tacaagaaag taatagcaaa catacaagtc cagcatttat
4151 agtaaataaa catagtgaac aaaaaagagg aaaaagcagg atggtcatag
4201 actatagaaa tttaaatgca aaaactaaaa catataatta tccaataccc
4251 aataaaatat taaagataag acaaatacaa ggatataatt actttagtaa
4301 atttgactgt aagtcaggat tttatcattt gaaactagag gatgaatcta
4351 aaaaattaac agcttttaca gtaccacaag gattttatga atggaatgtt
4401 ttaccatttg gatataaaaa tgcaccagga agataccaac attttatgga
4451 caactatttt aatcaactag aaaattgtat agtatatata gatgatatac
4501 tactatattc aagaacacaa gatgaacata taaaattatt agaaaaattc
4551 gcacatatta tagaaaactc tggtataagc ttaagcaaaa ccaaagcaga
4601 aattatgaaa aatcagatag aatttttagg aatacaaata gataaaaatg
4651 gaataaaaat gcaaactcat atagtacaaa aaataatcaa tcttgatgaa
4701 aacattgata caaaaaagaa attacaatca tttctaggaa tagtaaacca
4751 agtaagggaa tatataccta aattagcaga aaacttaaaa cctttacaga
4801 aaaaactaaa aaaggatgta gaatatagtt ttgatgaaaa agataaggaa
4851 caaataaaga aaattaagat attgtgtaaa aaattaccaa aattatactt
4901 tccagatgaa aacaaaaaat ttacctatat tgtagaaaca gattcaagta
4951 attatagcta tggaggagtt cttaagtata gatataataa agaaaaaata
5001 gaacatcatt gcagatacta ttcaggatct tatacagaac cacaagaaaa
5051 atgggaaata aatagaaaag aattatttgc attatataaa tgtctattag
5101 catttgaacc atatatagtt tacaccagat ttattgtaag aacagacaat
5151 acacaagtaa aatggtggat aactagaaaa gtacaagatt cagtcacaac
5201 aaaagaaata cggagactgg tattaaatat attaaacttt acatttacaa
5251 ttgaaataat taatactaac aagaatgttg ttgcagatta tttatcaaga
5301 caaagctacc caaactgatc cagataatac aatggaaaat ctactcttgg
5351 ccatgactac actttgtaaa aaagtggaaa gtatggatga agagatacaa
5401 ataatgagaa aaacagctag cagtcagcag catgactcaa aaaatgcgga
5451 gctaagacaa tcggaagtct ctaaaattcc agagctagaa ggtgacgttg
5501 agaaacacct aaaaactcat aacggtttgt taaatacagt tgcaggaagc
5551 agcacaacta gcagttcatc tgcaaggaaa aaggaagata ttaaacctag
5601 atacactaat ataaatatga acaatttatt ttcaaaacca ttcgtacaga
5651 gaaataccca agatacccag aaagaaatat tcttaccacc acaggtaaat
5701 acctacaaag aaagtttaaa ccaaaccaaa aagacatata accatataac
5751 ccgtacctat atagacaata tacataaaat acagaatttt ttaaataaaa
5801 atccaagatc ccaatctacc caaaatccaa acgaagacta tattacccac
5851 catctaacag gatacaataa attgatagct ttaccaaata caagtgcaaa
5901 attagtagcc acctgctaca actacggact actagatact gtatatacac
5951 agacaggaca agagatagcc aatatacctg agttatacaa ggcattcatg
6001 caatataaga ggataactaa agggacatta ttctacgtac gattctattc
6051 ggctacagca gagatactat atgaagagat aaagcctatc atacaagtta
6101 tcaaaattgg actcacaagg gaaatgatca taccagaaaa gatagaagaa
6151 caagaagaga tagaaaaagt aaatattcca gaattctatg ctaacaaaag
6201 gataattgga atatctacta tactaaatga actagcaaac aactatctaa
6251 atcagaatgc aatttggagc tattattcaa gggaacagac aatgatatat
6301 tcaaattgca gagatataag agaagcagat atggaagaac taagacagtg
6351 ggtcttaagt cttctaaaac cagaacaacc tacaaccaca agagctataa
6401 ggaggaattt catctcccca gatctgttaa caagatactg caagctaatt
6451 agtcacaaat atccagacca cctatgctca aaatgcaaag gagaagataa
6501 cattgttcca gacgtacaac tggaataatt cagatagaag aaaacgacaa
6551 aacaacaaga tatgacagaa agatctactt ttatagattc ctttttcttt
6601 tgtaaagaaa tgttattttg ttttttataa aagtcgtaaa gaatagttta
6651 ctttattaaa gtaagagtca ttcatgaaca gtaaaggtcg ttcatgaata
6701 gtaagagtcg tttgtaaata gtaagagtcg tttgtaaata gtaagagtcg
6751 tttgtaaata gtaagagtcg ttagtaagag tcgtttgtga atagtaagag
6801 tcaatttttg tattataaat agcagttcaa atgtgaataa aaaacaggct
6851 gcagttttca agcatccaac aattcctctc tcttctctct aatatatttt
6901 gcagatataa gcatacgaaa gctatggaac aacaaggaga tagcagaaat
6951 ctacaaaaac aggtatatca ttttccaact atgaacagct aaattactat
7001 attcctgata atttctatgt aaattataat tgttcatcat actatagtac
7051 tgttataaaa atcatcttga gaaagtttgc catgataata tgctaatagt
7101 aggtaaaccc agactatgcc atcctaatgt tgaaaccggt aggcagagaa
7151 gccgtttagg ggagtaaacg aagttgaagg cgctgttagg gtaattgatc
7201 gaagcagaaa atcatggtag tgaccagaaa agatgactaa aataacttat
7251 tataatatga tgaataagta taatagacat agagattaga aggaatatgt
7301 ttagcaaatc atatgaaaaa tgaatactta cttattagat gatgatacta
7351 gttataagtt actcatacta tatatcctaa aaaatatcga aaatgataca
7401 agaagaataa tctatgaaaa actagttact tttgaaatgt tagaaataat
7451 aaatcaaaat tggacagaat taattatacc agatgatata aatatagact
7501 tatatgagtt agacttatat tcagaataat aatgaatcat atataccaac
7551 aatattggca acaaactact gaaagcataa ctttactagg aaatttagta
7601 aaaacaaata tagaagagta tcaaagaacc caagatatac aatatataga
7651 atacatattg gaaagcttga aagaaatact tagattaatt ccgctacaaa
7701 aagaatatta tgaaaaagca tttaatttaa ataattaaat gacaaaagat
7751 aagaccaccc cccaatt