Sequence of DPV Rotavirus A

Human rotavirus segment 7 strain IGV-S NSP3 gene, complete cds.

ACC No: AF190171

Dated: 2003-05-29 | Length: 1796 | CRC: -1228709860

                !!NA_SEQUENCE 1.0
ID   AF190171   standard; genomic RNA; VRL; 1796 BP.
XX
AC   AF190171;
XX
SV   AF190171.1
XX
DT   10-JUL-2000 (Rel. 64, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Human rotavirus segment 7 strain IGV-S NSP3 gene, complete cds.
XX
KW   .
XX
OS   Human rotavirus A
OC   Viruses; dsRNA viruses; Reoviridae; Rotavirus; Rotavirus A.
XX
RN   [1]
RP   1-1796
RX   MEDLINE; 20327991.
RX   PUBMED; 10867195.
RA   Kojima K., Taniguchi K., Kawagishi-Kobayashi M., Matsuno S., Urasawa S.;
RT   "Rearrangement generated in double genes, NSP1 and NSP3, of viable
RT   progenies from a human rotavirus strain";
RL   Virus Res. 67(2):163-171(2000).
XX
RN   [2]
RP   1-1796
RA   Kojima K.;
RT   ;
RL   Submitted (28-SEP-1999) to the EMBL/GenBank/DDBJ databases.
RL   Department of Hygiene, Sapporo Medical University School of Medicine,
RL   South-1, West-17, Chuo-ku, Sapporo, Hokkaido 060-8556, Japan
XX
DR   GOA; Q9ICB2.
DR   SPTREMBL; Q9ICB2; Q9ICB2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1796
FT                   /db_xref="taxon:10941"
FT                   /mol_type="genomic RNA"
FT                   /organism="Human rotavirus A"
FT                   /strain="IGV-S"
FT                   /segment="7"
FT   CDS             35. .967
FT                   /codon_start=1
FT                   /db_xref="GOA:Q9ICB2"
FT                   /db_xref="SPTREMBL:Q9ICB2"
FT                   /note="rearranged"
FT                   /product="NSP3"
FT                   /protein_id="AAF81407.1"
FT                   /translation="MESTQQMVSSIINTSFEAAVVAATSTLELMGIQYDYNEVFTRVKS
FT                   KFDYVMDDSGVKNNLLGKAITIDQALNGKFGSAIRNRNWMTDSKTVAKLDEDVNKLRMT
FT                   LSSKGIDQKMRVLNACFSVKRIPGKSSSIIKCTRLMKDKIERGEVEVDDSYVDEKMEID
FT                   TIDWKSRYDQLEKRFESLKQRVNEKYNTWVQKAKKVNENMYSLQNVISQQQNQIADLQQ
FT                   YCNKLEADLQGKFSSLVSSVEWYLRSMELPDDVKNDIEQQLNSIDLINPINAIDDIESL
FT                   IRNLIQDYDRTFLMLKGLLKQCNYEYAYE"
XX
SQ   Sequence 1796 BP; 696 A; 223 C; 336 G; 541 T; 0 other;

AF190171  Length: 1796  January 8, 2004 16:01  Type: N  Check: 8504  ..

       1  ggcttttaat gcttttcagt ggttgctgct caagatggag tctactcagc
      51  agatggtaag ctctattatt aacacttctt ttgaagctgc agttgttgct
     101  gccacttcga cattagaatt aatgggtatt caatatgatt acaatgaagt
     151  atttactaga gttaaaagta aatttgatta tgtgatggat gactctggtg
     201  ttaaaaacaa tcttttgggt aaagctataa ctattgatca ggcgttaaat
     251  ggaaagtttg gctcagctat tagaaataga aattggatga ctgattctaa
     301  aacggttgct aaattagatg aagacgtgaa taaacttaga atgacattat
     351  cttctaaagg aatcgaccaa aagatgagag tacttaatgc ttgttttagt
     401  gtaaaaagaa taccaggaaa atcatcatca ataattaaat gcactagact
     451  tatgaaggat aaaatagaac gtggagaagt tgaggttgat gattcatatg
     501  ttgatgagaa aatggaaatt gatactattg attggaaatc tcgttatgat
     551  cagttagaaa aaagatttga gtcactaaaa caaagagtta atgagaaata
     601  caatacttgg gtacaaaaag cgaagaaagt aaatgaaaat atgtactctc
     651  ttcagaatgt catttcacaa cagcaaaacc aaatagcaga tcttcaacaa
     701  tattgtaata aattggaagc tgatttgcaa ggcaaattta gttcattagt
     751  gtcatcagtt gagtggtatc taaggtctat ggaattacca gatgatgtaa
     801  agaatgatat tgaacagcag ttaaattcaa ttgatttaat taatcccatt
     851  aatgctatag atgatatcga atcgttgatt agaaatttaa ttcaagatta
     901  tgacagaaca tttttaatgt taaaaggact gttgaagcaa tgcaactatg
     951  aatatgcata tgagtagtca cataattaaa aatataaacc atctacacat
    1001  gaccttggat gactgattct aaaacggttg ctaaattaga tgaagacgtg
    1051  aataaactta gaatgacatt atcttctaaa ggaatcgacc aaaagatgag
    1101  agtacttaat gcttgtttta gtgtaaaaag aataccagga aaatcatcat
    1151  caataattaa atgcactaga cttatgaagg ataaaataga acgtggagaa
    1201  gttgaggttg atgattcata tgttgatgag aaaatggaaa ttgatactat
    1251  tgattggaaa tctcgttatg atcagttaga aaaaagattt gagtcactaa
    1301  aacaaagagt taatgagaaa tacaatactt gggtacaaaa agcgaagaaa
    1351  gtaaatgaaa atatgtactc tcttcagaat gtcatttcac aacagcaaaa
    1401  ccaaatagca gatcttcaac aatattgtaa taaattggaa gctgatttgc
    1451  aaggcaaatt tagttcatta gtgtcatcag ttgagtggta tctaaggtct
    1501  atggaattac cagatgatgt aaagaatgat attgaacagc agttaaattc
    1551  aattgattta attaatccca ttaatgctat agatgatatc gaatcgttga
    1601  ttagaaattt aattcaagat tatgacagaa catttttaat gttaaaagga
    1651  ctgttgaagc aatgcaacta tgaatatgca tatgagtagt cacataatta
    1701  aaaatataaa ccatctacac atgaccctct atgagcacaa tagttaaaag
    1751  ctaacactgt caaaaaccta aatggctata ggggcgttat gtgacc