Sequence of DPV Carnation mottle virus
Carnation mottle virus, complete genome.
ACC No: AF192772
Dated: 2005-04-15 | Length: 4003 | CRC: 1993886897
!!NA_SEQUENCE 1.0
ID AF192772 standard; genomic RNA; VRL; 4003 BP.
XX
AC AF192772;
XX
SV AF192772.1
XX
DT 14-DEC-1999 (Rel. 62, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Carnation mottle virus, complete genome.
XX
KW .
XX
OS Carnation mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4003
RA Zhang A.P., Yue Y., Ye R., Zhu H.Q., Xu L., Yu S.Q.;
RT "Infectivity of full-length cDNA of carnation mottle virus";
RL Chin. Sci. Bull. 0:0-0(1999).
XX
RN [2]
RP 1-4003
RA Zhang A.P., Yue Y., Ye R., Zhu H.Q., Xu L., Yu S.Q.;
RT ;
RL Submitted (07-OCT-1999) to the EMBL/GenBank/DDBJ databases.
RL Microbiology, Fudan University, 220 Handan Road, Shanghai 200433, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .4003
FT /country="China:Shanghai"
FT /db_xref="taxon:11986"
FT /mol_type="genomic RNA"
FT /organism="Carnation mottle virus"
FT /strain="shanghai"
FT /specific_host="Dinnthus caryophyllus"
FT CDS 70. .2361
FT /codon_start=1
FT /db_xref="GOA:Q9J5U7"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q9J5U7"
FT /note="reads through stop codon"
FT /transl_except=(pos:805. .807,aa:OTHER)
FT /product="polymerase-associated protein"
FT /protein_id="AAF15525.1"
FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR
FT GARRIVSSGGRCLIVQSPYGNPNQGLIRGEDEEIDNVEESTPEELTQLIEVKAEVDGKE
FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA
FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYARKIAMASILNRKGWCWRLMVNPLDR
FT ARWWEMWCVVNGFDSNKPVTFPKXGGLFYLNGVETKIRRGGHPSVIEVDGQCPPRERKL
FT YVQNAITTGYEYRVHNHSYANLRRGLLERVFYVERNKELVSCPQPEPGSFKEMGYLRRR
FT FHRVCGNHTRISANDLVDCYQGRKRTIYENAAASLLDRAIERKDGDLKTFIKAEKFNVN
FT LKSDPAPRVIQPRSPRYNVELGRYLKKYEHHAYKALDKIWGGPTVMKGYTTEEVAQHIW
FT SAWNQFQTPVAIGFDMSRFDQHVSVAALEFEHSCYLACFEGDAHLANLLKMQLVNHGVG
FT FASNGMLRYTKEGCRMIGDMNTALGNCLLACLITKHLMKIRSRLINNGDDCVLICERTD
FT IDYVVSNLTTGWSRFGFNCIAEEPVYEMEKIRFCQMAPVFDGAGWLMVRDPLVSMSKDS
FT HSLVHWNNETNAKQWLKSVGMCGLRIAGGVPIVQEFYQKYVETAGNVKENKNITEKSSS
FT GFFMMADRAKRGYSAVSEMCRFSFYQAFGITPDQQIALEGEIRSLTIDTNVGPQCEAAD
FT SLWILNRKYQ"
FT CDS 70. .807
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q9Q6X8"
FT /product="polymerase-associated protein"
FT /protein_id="AAF15524.1"
FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR
FT GARRIVSSGGRCLIVQSPYGNPNQGLIRGEDEEIDNVEESTPEELTQLIEVKAEVDGKE
FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA
FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYARKIAMASILNRKGWCWRLMVNPLDR
FT ARWWEMWCVVNGFDSNKPVTFPK"
FT CDS 70. .2679
FT /codon_start=1
FT /db_xref="GOA:Q9J5U6"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q9J5U6"
FT /note="reads through stop codon"
FT /transl_except=(pos:805. .807,aa:OTHER)
FT /transl_except=(pos:2359. .2361,aa:OTHER)
FT /product="polymerase-associated protein"
FT /protein_id="AAF15527.1"
FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR
FT GARRIVSSGGRCLIVQSPYGNPNQGLIRGEDEEIDNVEESTPEELTQLIEVKAEVDGKE
FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA
FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYARKIAMASILNRKGWCWRLMVNPLDR
FT ARWWEMWCVVNGFDSNKPVTFPKXGGLFYLNGVETKIRRGGHPSVIEVDGQCPPRERKL
FT YVQNAITTGYEYRVHNHSYANLRRGLLERVFYVERNKELVSCPQPEPGSFKEMGYLRRR
FT FHRVCGNHTRISANDLVDCYQGRKRTIYENAAASLLDRAIERKDGDLKTFIKAEKFNVN
FT LKSDPAPRVIQPRSPRYNVELGRYLKKYEHHAYKALDKIWGGPTVMKGYTTEEVAQHIW
FT SAWNQFQTPVAIGFDMSRFDQHVSVAALEFEHSCYLACFEGDAHLANLLKMQLVNHGVG
FT FASNGMLRYTKEGCRMIGDMNTALGNCLLACLITKHLMKIRSRLINNGDDCVLICERTD
FT IDYVVSNLTTGWSRFGFNCIAEEPVYEMEKIRFCQMAPVFDGAGWLMVRDPLVSMSKDS
FT HSLVHWNNETNAKQWLKSVGMCGLRIAGGVPIVQEFYQKYVETAGNVKENKNITEKSSS
FT GFFMMADRAKRGYSAVSEMCRFSFYQAFGITPDQQIALEGEIRSLTIDTNVGPQCEAAD
FT SLWILNRKYQXLRSKCSLGIEENKRHVDRWPRMPSANLHPIVLTGVIGLMLLIRLRCTF
FT TSTFSLPPLVTLNQIIALSFCGLLLNSISRAERACYYNYSVDSSKQQHISISTPNGK"
FT CDS 2669. .3715
FT /codon_start=1
FT /db_xref="GOA:Q9Q6X7"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:Q9Q6X7"
FT /note="coat protein"
FT /gene="cp"
FT /product="p38"
FT /protein_id="AAF15526.1"
FT /translation="MENKGEKIAMNPTVQTLAQKGDKLAVKLVTRGWASLSTNQKRRAE
FT MLAGYTPAILAFTPRRPRMTNSPPRTSRNSPGQAGKSMTMSKTELLCTVKGTTGVIPSF
FT EDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTP
FT PTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSASDDAKLVDFGRLVLSTYGFD
FT KADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK
FT WCIIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAICELVTQMEGQMLKITKTSAEQP
FT LKVVVYRM"
XX
SQ Sequence 4003 BP; 1134 A; 862 C; 1091 G; 916 T; 0 other;
AF192772 Length: 4003 April 19, 2005 08:54 Type: N Check: 7388 ..
1 gggtaagctg gcgggcaaac ctacactcta tcttacttac attatatatc
51 ctaaccatct gctttcacta tgggattacc cagtctacta gtggaaggcg
101 ttattgggtg cactctagtt ggtggtttag tggctgtggg tagcgcagcg
151 ctggccgtca gggcgaccat cggagtagtg gaattcaata gggagtgtgt
201 gcgtggggcg aggaggatcg tatctagcgg tggaaggtgc ttaatagtcc
251 aatcccctta tggtaatcct aaccaaggat tgataagagg tgaggatgaa
301 gaaattgata atgtggaaga gtcgactccg gaggagctaa ctcagttgat
351 cgaggttaag gcggaagtgg atgggaagga ggtggttgtc tccaagaagc
401 gtgtggtgaa caggcacttg agacaacgat tcgttcgctc cattgccatc
451 gaagccaaaa atcactttgg tggtgacatc agtcccagca aggctaacta
501 cctttctgtt tccaagtttt tgacggggaa atgcaaggag aggcatgttg
551 tgcccgctca cactagagat tgtgtgagcg ctgccatggt actggtgttc
601 acccctgacg tccacgagat caggatgatg gcagggttgg catctgatgc
651 agcgtacgcg aggaaaatcg caatggcaag catactgaac aggaaagggt
701 ggtgttggag gctaatggta aatccattgg atagggcaag atggtgggaa
751 atgtggtgcg tcgtaaacgg gtttgactcc aacaaacccg tcacctttcc
801 caaatagggg ggcctgttct acctcaatgg tgtggagacg aaaattcgtc
851 gtggaggcca cccatcagtg attgaggtag acgggcaatg tcctccaaga
901 gagagaaaac tctacgtaca gaatgccata accactggtt atgaatacag
951 ggtccacaac cattcgtacg caaacctcag acgagggctc cttgagagag
1001 tcttctatgt tgagcgcaac aaggagctag tcagctgtcc gcaacctgaa
1051 cccggcagct ttaaagagat gggatacctg cgacgcaggt tccatagagt
1101 gtgtggcaat catacccgga tctctgccaa tgatttggta gattgttatc
1151 agggcaggaa gcgcacaatt tatgagaatg cagcagcgtc cctacttgat
1201 agagctatcg agaggaagga tggcgatctc aagaccttta taaaggcgga
1251 gaaattcaac gtaaatctga aaagtgatcc tgctcctcgg gtcatacagc
1301 ccaggagccc tcgctacaat gtggagttgg gccggtactt aaagaagtat
1351 gaacaccatg cttacaaagc cctggacaag atctgggggg ggccaacggt
1401 catgaaagga tacactacag aggaggtagc acagcacatt tggagcgcat
1451 ggaatcaatt ccagacacct gtagccatcg gatttgacat gtcaagattt
1501 gatcagcacg tgtctgtagc cgcgctcgag ttcgaacatt catgctattt
1551 ggcctgtttt gaaggggacg ctcacctcgc caatttgctt aagatgcaac
1601 tggtgaatca tggcgtaggt tttgcgagca atggaatgtt gcgatacacc
1651 aaggaagggt gcagaatgat cggagacatg aacactgcct tgggcaactg
1701 tttgttagcg tgtcttatca ccaaacactt aatgaaaatc agaagcagac
1751 tgatcaacaa tggggatgac tgcgtgctta tttgcgaaag aacagacatc
1801 gactacgtcg tgagcaatct aacgacggga tggagtcgat ttggattcaa
1851 ttgcatagca gaagaaccag tgtacgaaat ggaaaagatc agattctgcc
1901 agatggcacc ggtgtttgat ggagcaggct ggctgatggt cagggaccca
1951 ttggtgagca tgagtaaaga ttctcactcc ttggtacact ggaacaacga
2001 aacaaacgca aaacaatggc taaaatcagt aggaatgtgc ggactgcgga
2051 ttgccggggg ggttccgatt gtgcaagagt tctaccaaaa atacgttgaa
2101 acagccggaa atgtgaaaga gaacaaaaat atcacagaga aaagtagttc
2151 tgggttcttt atgatggcgg atcgcgctaa gcggggctat tctgcagtgt
2201 ctgagatgtg ccgattcagt ttttaccagg cattcggtat tacaccagac
2251 cagcagatcg cgttggaggg ggagattaga tctctcacca tcgacaccaa
2301 tgtggggccc cagtgtgaag cggcagattc actatggata ttgaaccgga
2351 agtaccagta gttgagaagc aaatgctcgc tgggaataga ggaaaacaaa
2401 agacacgtag atcggtggcc aaggatgcca tccgcaaacc tgcatccgat
2451 agtactaacg ggggtaattg ggttaatgtt gctgataaga ttgaggtgca
2501 cattcacttc aacttttagt ttgcccccgt tggtaacctt aaatcagata
2551 atagcgttgt cattttgtgg tcttctatta aacagcatct ctcgggcaga
2601 aagagcttgc tattacaact actctgttga cagttctaaa caacaacaca
2651 tttcgataag tacaccaaat ggaaaataaa ggagaaaaga tcgcgatgaa
2701 tcccactgtg caaacattgg cgcagaaggg ggataagtta gccgtgaagt
2751 tggtgacaag agggtgggcc tctctgagta cgaaccagaa gaggagagct
2801 gaaatgcttg ctggatacac tccagcgatc ctagccttca caccccgacg
2851 accacggatg acaaactctc ctccaagaac cagtaggaat tcaccaggac
2901 aagctggaaa gtccatgacg atgagtaaga ccgaactgct atgcaccgtc
2951 aaaggtacca caggtgttat cccaagcttt gaagactggg tcgtttcccc
3001 ccgaaacgta gccgttttcc cccaactctc gctgctggcg accaacttca
3051 ataagtaccg catcactgcg cttactgtga agtactcacc agcgtgtagc
3101 ttcgagacca atgggagggt ggctctggga ttcaacgatg acgcttcgga
3151 cacaccacca accaccaagg ttggatttta cgatctgggc aaacatgtgg
3201 aaactgctgc acagacagct aaagatctag tgataccagt agacggcaaa
3251 acccggttca tcagggactc ggctagtgat gatgccaaac tagtcgattt
3301 tggacgatta gtcttgtcaa catacgggtt tgacaaggca gatactgtgg
3351 tgggcgagtt gtttatacag tacacgattg tgctgagtga cccaaccaag
3401 acggccaaaa tttcacaggc aagcaacgat aaggtgtcgg atggaccaac
3451 gtatgtggtc ccttcggtta acggcaacga gctgcaacta agagtggtag
3501 ccgcagggaa atggtgcatt atagtgcggg gcacggttga aggtggcttc
3551 accaaaccca cacttattgg accaggaatc agcggtgatg tggactatga
3601 aagtgccaga cctatcgcca tttgcgagtt ggtgacacaa atggagggcc
3651 agatgttgaa aatcaccaag acctcagcag aacaaccact caaagtggtt
3701 gtttatagga tgtgaatgca gaagaaaagt ttgatagaca cacacggcgg
3751 gacgtgttgc tagagctgcc actctgcccg agatggatcg atattaacca
3801 tctttggcaa cagcgtgtgt gatcaaccaa acctagtaac tgcgtagcat
3851 ccgactgtaa cctgttctct gctgaatgcg agggtggcct cgtgatccca
3901 aaccataaaa gaaaccaact tgttggtgga agggctagga agtaggatca
3951 accactgttt attaattagg ggtaagagta ttcactgtac tctttccccg
4001 ccc