Sequence of DPV Drosophila X virus
Drosophila x virus segment B putative RNA-dependent RNA polymerase VP1 (Vp1) gene, complete cds.
ACC No: AF196645
Dated: 2002-06-25 | Length: 3243 | CRC: -829209375
!!NA_SEQUENCE 1.0
ID AF196645 standard; RNA; VRL; 3243 BP.
XX
AC AF196645;
XX
SV AF196645.2
XX
DT 12-OCT-2001 (Rel. 69, Created)
DT 25-JUN-2002 (Rel. 72, Last updated, Version 3)
XX
DE Drosophila x virus segment B putative RNA-dependent RNA polymerase VP1
DE (Vp1) gene, complete cds.
XX
KW .
XX
OS Drosophila x virus
OC Viruses; dsRNA viruses; Birnaviridae; Entomobirnavirus.
XX
RN [1]
RP 1-3243
RX MEDLINE; 22066034.
RX PUBMED; 12069523.
RA Shwed P.S., Dobos P., Cameron L.A., Vakharia V.N., Duncan R.;
RT "Birnavirus VP1 Proteins Form a Distinct Subgroup of RNA-Dependent RNA
RT Polymerases Lacking a GDD Motif";
RL Virology 296(2):241-250(2002).
XX
RN [2]
RP 1-3243
RA Shwed P.S., Cameron L., Dobos P.;
RT ;
RL Submitted (19-OCT-1999) to the EMBL/GenBank/DDBJ databases.
RL Microbiology, University of Guelph, Ontario N1G 2W1, Canada
XX
RN [3]
RC Sequence update by submitter
RP 1-3243
RA Shwed P.S., Cameron L., Dobos P.;
RT ;
RL Submitted (18-JAN-2002) to the EMBL/GenBank/DDBJ databases.
RL Microbiology, University of Guelph, Ontario N1G 2W1, Canada
XX
DR FLYBASE; FBgn0015843; X-virus.
DR FLYBASE; FBgn0046684; X-virus\Vp1.
DR SPTREMBL; Q91CD5; Q91CD5.
XX
CC On Jan 22, 2002 this sequence version replaced gi:16032970.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3243
FT /chromosome="segment B"
FT /db_xref="taxon:48981"
FT /organism="Drosophila x virus"
FT CDS 105. .3098
FT /codon_start=1
FT /db_xref="FLYBASE:FBgn0046684"
FT /db_xref="SPTREMBL:Q91CD5"
FT /gene="Vp1"
FT /product="putative RNA-dependent RNA polymerase VP1"
FT /protein_id="AAL13168.2"
FT /translation="MSDIFNQQGLKSKFSNIVKNEGQGDSDIREVFNELARPQAEVGRD
FT IEYSELSQALNDNSVKVFRPQPYDELVNIPFIEAASPRMMALYGELLDSKDVSLPVGSG
FT LHIPTYKPGHEVTPPLLTLPNSLSYEYMHYIANSANDTWDKQIYETLKELLVAQATNRF
FT STGSLLGQVKRVAAGQDVAYGRKGHHKNKSFKEMGITPYRVMEWLDEYMPISDDEPEIT
FT LSNTLDWLVYTPEEAELMGVPDSLPDITQSSAAGLPWLGKKKGEVAVSALITANMLIKD
FT VSQLLKENLFTGSNNPLDPKKEGVAEVTTKNPRRAADQFSRQVLDRIIKEYSYTMMGLL
FT FPKGERYAIADHLTKTRNIWSASYVTHLIGSTISDQPAKRMLNVLTSTSRTPSLAKFSP
FT TQGGMEALINIILNATDIVELVYADNAYIYYPNEDIWYSIDLTKGEANCTRDVAMTTAM
FT YLLTRGWTSKQGTPIYNYTWAYLALYGIPYMTVDSISVLKNFQIKNPGQGSGNPWTFLN
FT NHVLTTILMNKWSEIGKPQPSPDVIEKLASMTGIDFKVELVVTNFREKLIAASRHSIPT
FT SNRVEPRTIVEMDMLGWDVTHTEFGFTPVLSKERLFKSIACPQPPSSTFQTSVAKQVHK
FT YIQNVALLYVGAWAYPCIAQTIEGYALNHWNTINIMIRNKEYDLDKAIGKAVEASPFSE
FT VISLLSLDRPMHEQNYAQVLYQQKTIEKKEAKPKVSNPLYKRDKETYHEYTTRMARMRI
FT NDDMVGPQWEPIINLVTKLYPREATGENQKSRESMTRVKIRGLLENMERQLESNGRSMD
FT VWYNAYLTGKKPSGVDKKLATLLVLLAPKRTKKLPSGVYQKLLGYPPIDKSPVPSLTSD
FT EAYLYDTNSLEYNRIAYVSKLNEDDITVYANKYMVYSSTLLSNLLPDKVDWPELRSMNV
FT EGASDPYQVKGYKKKELKPRFGEEILDDEPTGKKSSSEKRRLQRKGQKAKLQRQAATGT
FT TFVRKPLN"
FT misc_feature 1410. .1415
FT /note="Region: conserved viral RdRp motif IV"
FT /gene="Vp1"
FT misc_feature 1629. .1673
FT /note="Region: conserved viral RdRp motif V"
FT /gene="Vp1"
FT misc_feature 1761. .1805
FT /note="Region: conserved viral RdRp motif VI"
FT /gene="Vp1"
FT misc_feature 1908. .1940
FT /note="Region: conserved viral RdRp motif VII"
FT /gene="Vp1"
XX
SQ Sequence 3243 BP; 1089 A; 705 C; 743 G; 706 T; 0 other;
AF196645 Length: 3243 September 18, 2002 10:51 Type: N Check: 5714 ..
1 ggaaaataat tggcggccga taaggccgac cgatttcggg cagaggtgca
51 atcacacgga gaggggtgtc agcaccaatt aataagataa caaatataac
101 aatcatgagt gacattttca atcaacaggg actgaaatcc aaattttcga
151 acattgtcaa gaatgaagga caaggtgact cggacatcag agaggtattc
201 aatgaattag caagacctca agccgaagtt ggccgagaca tagaatattc
251 agaacttagt caggcattaa atgacaatag cgttaaagtc tttagaccgc
301 agccgtatga tgaattggtt aatattccct ttatagaggc cgcatctcct
351 agaatgatgg ccctgtacgg ggaactgttg gattccaaag acgtttcact
401 gcctgttggc tctggcctgc acataccaac ctataagcca ggccatgagg
451 tcaccccacc cctcctcact ttacctaact cgctttccta tgagtacatg
501 cattacatag ctaactcagc taatgacacg tgggacaagc agatttatga
551 gacccttaaa gaactacttg tagctcaagc tacaaatagg ttctctactg
601 gttccctact tggtcaagtg aagagggttg cggccggcca agatgtggca
651 tatggaagaa aaggtcacca taagaataag agctttaaag aaatggggat
701 aactccatat cgtgtgatgg agtggcttga tgagtacatg ccaatcagtg
751 atgacgagcc tgagataacc ttatcaaaca cccttgactg gcttgtatac
801 acgccagaag aggctgaatt gatgggggtc ccagactcgt taccagacat
851 cacacaatcc tcagcagcgg gtctcccctg gctgggtaag aagaagggcg
901 aagttgccgt atctgctctg attacggcga atatgctgat aaaagacgtg
951 tcacaacttc tgaaagaaaa cctctttact ggatccaaca atccattgga
1001 tcccaagaag gaaggtgtag cagaagttac gacaaagaac ccaaggaggg
1051 cagcagacca attctcccga caggtactcg atagaatcat taaagagtac
1101 tcttacacaa tgatgggtct acttttcccg aaaggagagc ggtatgccat
1151 agctgaccat ttaaccaaga ctaggaatat ttggagcgcc agttatgtca
1201 cacacctaat cgggtcaaca atatcagacc agccagcaaa acgcatgcta
1251 aacgtcctta catcaacatc aaggacgcca tccctagcta agttttctcc
1301 aactcaggga gggatggagg ctcttattaa tattatcctc aacgcaacag
1351 atatagtgga actagtatac gctgataacg catacatata ctatccgaac
1401 gaagatatat ggtatagcat agacctaaca aaaggcgagg ctaactgtac
1451 acgcgatgtg gcaatgacaa cagccatgta cctattaaca agaggttgga
1501 catcgaaaca gggtacacct atatacaatt acacatgggc atacttagcc
1551 ttgtatggta taccatatat gaccgtggac tcaattagtg tattaaagaa
1601 cttccagata aagaatcctg gacagggcag tggcaatccg tggaccttct
1651 tgaacaatca tgtattaacc acgatactga tgaacaagtg gtctgagata
1701 ggtaagccac aaccctcccc ggatgttatc gagaagttgg catcaatgac
1751 aggaattgat ttcaaggttg aactagtagt gacaaacttc cgagagaaac
1801 taatagcagc ttcaaggcat tcgatcccta caagtaacag ggttgaaccc
1851 agaacaattg tagagatgga catgctgggc tgggacgtaa ctcacacgga
1901 gtttggcttc acaccggtac tgtcaaaaga acgactattc aaatcaatag
1951 cctgcccaca accaccaagt agcacctttc aaacgagcgt ggcaaaacag
2001 gtacacaagt acattcagaa tgtagctctg ttgtacgtgg gtgcctgggc
2051 ttatccatgc atagcacaga ccatagaggg gtatgctcta aatcattgga
2101 acactataaa tataatgatc cgaaacaaag agtatgatct tgacaaggct
2151 ataggaaaag ccgtagaggc tagcccattt agcgaagtta tcagcctgtt
2201 aagcttggat agaccgatgc atgagcaaaa ttacgcacag gtcttatacc
2251 aacagaagac catcgaaaag aaagaggcaa aaccaaaggt tagcaacccg
2301 ctatacaaac gggataaaga gacctaccac gaatacacaa cgcgtatggc
2351 gagaatgagg atcaatgacg acatggttgg tcctcagtgg gaaccaataa
2401 taaacctggt taccaaactc tatccgcggg aggctacagg agagaaccaa
2451 aagtctaggg aatcaatgac aagggttaag atacgaggat tattggaaaa
2501 catggaaaga cagttagaaa gcaatggcag atcaatggat gtatggtaca
2551 atgcatacct aacaggaaag aaaccaagtg gagtcgacaa aaagttggca
2601 acattactag tcctgttagc accaaaaaga actaagaaac tgccttcagg
2651 agtttatcaa aaactacttg ggtacccgcc catagataaa tctcccgttc
2701 catctcttac atctgatgag gcgtatcttt acgacacgaa ttccctagaa
2751 tacaaccgga tagcatacgt aagcaaattg aatgaagatg acatcacagt
2801 ttatgccaat aagtacatgg tgtacagcag caccctgttg tcaaaccttc
2851 tgccagacaa agtagattgg ccagaactga gatcaatgaa cgtcgagggc
2901 gcatcggatc cttatcaagt gaagggctac aaaaagaagg agttgaagcc
2951 acggtttggt gaggagatac tagacgatga gccaactggc aagaagtcat
3001 catcagaaaa gagaaggcta cagaggaaag gccaaaaagc caagttgcag
3051 agacaagctg caacaggcac aacatttgtt agaaaaccat taaattaacc
3101 ccgggagggg ggggactaaa tcttggtaag gaatagacca tccgccactg
3151 gcttaagaac caggtccctt agccgttaga ctaaaagcaa gtcacctgct
3201 ctcatcaggc aggagatccc aaatgtaaat tgggacggct ccc