Sequence of DPV Rotavirus B
Human rotavirus B strain CAL-1 segment 8 putative nonstructural protein NSP2 gene, complete cds.
ACC No: AF205850
Dated: 2001-09-17 | Length: 979 | CRC: -604258988
!!NA_SEQUENCE 1.0
ID AF205850 standard; RNA; VRL; 979 BP.
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AC AF205850;
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SV AF205850.1
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DT 02-JUN-2000 (Rel. 63, Created)
DT 17-SEP-2001 (Rel. 69, Last updated, Version 3)
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DE Human rotavirus B strain CAL-1 segment 8 putative nonstructural protein
DE NSP2 gene, complete cds.
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KW .
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OS Human rotavirus B strain CAL-1
OC Viruses; dsRNA viruses; Reoviridae; Rotavirus; Group B rotaviruses;
OC Human rotavirus B.
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RN [1]
RP 1-979
RX MEDLINE; 21080727.
RX PUBMED; 11213100.
RA Sen A., Kobayashi N., Das S., Krishnan T., Bhattacharya S.K., Naik T.N.;
RT "The evolution of human group B rotaviruses";
RL Lancet 357(9251):198-199(2001).
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RN [2]
RP 1-979
RA Sen A., Das S., Krishnan T., Naik T.N.;
RT "Partial sequence of gene segment 8 of the human group B rotavirus strain
RT CAL-1 encoding an extended protein in comparision to the cognate gene
RT product of the ADRV strain";
RL Unpublished.
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RN [3]
RP 1-979
RA Sen A., Das S., Krishnan T., Naik T.N.;
RT ;
RL Submitted (17-NOV-1999) to the EMBL/GenBank/DDBJ databases.
RL Division of Virology, National Institute of Cholera and Enteric Diseases,
RL C.I.T. Road, Scheme XM, Beliaghata, Calcutta, West Bengal 700 010, India
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DR SPTREMBL; Q9J3T3; Q9J3T3.
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FH Key Location/Qualifiers
FH
FT source 1. .979
FT /country="India: Calcutta"
FT /db_xref="taxon:121794"
FT /note="isolated in 1998 from the stools of an adult patient
FT suffering from diarrhea segment: 8"
FT /organism="Human rotavirus B strain CAL-1"
FT /strain="CAL-1"
FT CDS 36. .941
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9J3T3"
FT /product="putative nonstructural protein NSP2"
FT /protein_id="AAF72868.1"
FT /translation="MTQSVSLSDFIVKTEDGYMPSDRECVALDRYLSKEQKELRETFKD
FT GKNDRSALRIKMFLSPSPSRRFTQHGVVPMREIKTNTDIPSTLWTLVTDWLLNLLQDEE
FT NQEMFEDFISSKFPDVLASADKLARFAQRLEDRKDVLHKNFSKAMNAFGACFWAIKPTF
FT ATEGKCNVVRATDDSMILEFQPVPEYFRCGRSKATFYKLYPLSDEQPVNGMLALKAVAG
FT NQFFMYHGHGHIRTVPYHELADAIKSYARKDKETLESISKSPLAAQCGSKFLDMLDGIR
FT SKQKIEDVILKAKIFEKKRS"
FT variation 761
FT /note="encodes a longer protein than that encoded by the
FT ADRV virus strain"
FT /replace=""
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SQ Sequence 979 BP; 325 A; 175 C; 199 G; 280 T; 0 other;
AF205850 Length: 979 December 21, 2001 14:56 Type: N Check: 364 ..
1 gtgtgtcgtg agagggctcc atcaccctgg tcaccatgac gcaatcagtt
51 tctctttctg atttcatcgt taagactgaa gatggatata tgccatcaga
101 cagagaatgt gttgcattgg atagatattt atccaaagag cagaaggaac
151 taagagaaac ttttaaggat ggaaaaaatg atagatcagc tttaagaatt
201 aaaatgttct tatctccttc accttccaga cgattcactc aacatggagt
251 tgttccaatg agagaaataa aaacaaatac ggatatacca agtacactat
301 ggactcttgt gactgattgg ttactaaatt tacttcaaga tgaagaaaat
351 caggaaatgt ttgaagattt tattagttcc aaatttccgg atgttttagc
401 ttcggcagac aagctagccc gtttcgccca gcgattggag gatagaaaag
451 atgtgttgca caagaatttt tctaaagcca tgaatgcctt tggcgcctgt
501 ttttgggcga tcaaaccgac ttttgccact gagggaaaat gtaatgttgt
551 aagagccact gatgattcaa tgatactaga gtttcagcca gtaccagaat
601 attttcgttg tggaagatca aaagctacat tttataaatt atacccactc
651 tcagacgaac aacccgtcaa tggcatgctc gctctaaaag cagttgctgg
701 aaatcagttt tttatgtacc atggacatgg gcacatcaga acagttccat
751 atcatgaact tgctgatgcc atcaaatcat acgctcgtaa agataaagaa
801 acgctcgaga gcatttctaa atcaccactt gcagctcaat gtggtagtaa
851 atttctcgat atgctcgatg gaattagatc aaaacaaaaa attgaagatg
901 tgattttgaa agcaaaaatt tttgaaaaga aaagaagctg aacgtgttaa
951 atccgctgaa atgggttaac ggctatttt