Sequence of DPV Rotavirus B

Human rotavirus B strain CAL-1 segment 11 putative nonstructural protein NSP5 gene, complete cds.

ACC No: AF206724

Dated: 2001-09-17 | Length: 573 | CRC: -1843149794

                !!NA_SEQUENCE 1.0
ID   AF206724   standard; RNA; VRL; 573 BP.
XX
AC   AF206724;
XX
SV   AF206724.1
XX
DT   02-JUN-2000 (Rel. 63, Created)
DT   17-SEP-2001 (Rel. 69, Last updated, Version 2)
XX
DE   Human rotavirus B strain CAL-1 segment 11 putative nonstructural protein
DE   NSP5 gene, complete cds.
XX
KW   .
XX
OS   Human rotavirus B strain CAL-1
OC   Viruses; dsRNA viruses; Reoviridae; Rotavirus; Group B rotaviruses;
OC   Human rotavirus B.
XX
RN   [1]
RP   1-573
RX   MEDLINE; 21080727.
RX   PUBMED; 11213100.
RA   Sen A., Kobayashi N., Das S., Krishnan T., Bhattacharya S.K., Naik T.N.;
RT   "The evolution of human group B rotaviruses";
RL   Lancet 357(9251):198-199(2001).
XX
RN   [2]
RP   1-573
RA   Sen A., Das S., Krishnan T., Kobayashi N., Naik T.N.;
RT   "Partial sequence of cDNA of the gene segment 11 (NSP5) of the human group
RT   B rotavirus strain CAL-1";
RL   Unpublished.
XX
RN   [3]
RP   1-573
RA   Sen A., Das S., Krishnan T., Kobayashi N., Naik T.N.;
RT   ;
RL   Submitted (19-NOV-1999) to the EMBL/GenBank/DDBJ databases.
RL   Division of Virology, National Institute of Cholera and Enteric Diseases,
RL   C.I.T. Road, Scheme XM, Beliaghata, Calcutta, West Bengal 700 010, India
XX
DR   SPTREMBL; Q9J3M1; Q9J3M1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .573
FT                   /chromosome="11"
FT                   /db_xref="taxon:121794"
FT                   /note="isolated from stool samples of adult patient
FT                   suffering from diarrhea"
FT                   /organism="Human rotavirus B strain CAL-1"
FT                   /strain="CAL-1"
FT   CDS             15. .527
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9J3M1"
FT                   /note="NS26"
FT                   /product="putative nonstructural protein NSP5"
FT                   /protein_id="AAF72869.1"
FT                   /translation="MAEASEFNFTTKRKQRIMSDRRSKDDTKQKKIEEKSDVDLVDSAS
FT                   VYSQESARSNYSDAYDKLKREPIVEESNDAKYRNFEFSEDEEVYRPSSKASDKSYREMK
FT                   RKYDGTSTSDSILEKLSELNLEIEKIKQMNQPVTIDAAFNMILRNVDNLTIRQKQALVN
FT                   AIINSMN"
XX
SQ   Sequence 573 BP; 225 A; 96 C; 109 G; 143 T; 0 other;

AF206724  Length: 573  December 21, 2001 14:56  Type: N  Check: 9339  ..

       1  ctcactaccc agagatggca gaagcgtctg agttcaactt taccacaaaa
      51  agaaagcaga gaataatgag tgatcgaaga tcaaaagatg acacaaaaca
     101  aaaaaagatt gaagaaaaat ctgatgttga cttggttgat tcagcctcag
     151  tttattcaca agaatctgcc agaagtaact atagtgatgc ttacgataag
     201  ttaaaacgtg aaccaatagt tgaagaatca aatgacgcga agtataggaa
     251  ttttgaattt tctgaagatg aagaagttta tagaccatca agtaaagcgt
     301  cagacaaatc atatagagaa atgaaacgta aatatgatgg tactagcacg
     351  tcagattcca ttttagaaaa attgtcagag ttaaatctcg agattgagaa
     401  gataaaacaa atgaaccaac cagtcacaat cgatgcagca ttcaacatga
     451  ttcttcgaaa cgttgacaat ctaactataa ggcagaaaca ggcattagta
     501  aacgcaatta ttaattctat gaactagact gtgatctcca cctgtcgtct
     551  actggggtca acctcttgag tta