Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate D M segment G1/G2 glycoprotein precursor and non-structural protein genes, complete cds.
ACC No: AF208497
Dated: 2001-05-05 | Length: 4829 | CRC: -484500486
!!NA_SEQUENCE 1.0
ID AF208497 standard; RNA; VRL; 4829 BP.
XX
AC AF208497;
XX
SV AF208497.1
XX
DT 06-JUL-2000 (Rel. 64, Created)
DT 05-MAY-2001 (Rel. 67, Last updated, Version 2)
XX
DE Tomato spotted wilt virus isolate D M segment G1/G2 glycoprotein precursor
DE and non-structural protein genes, complete cds.
XX
KW .
XX
OS tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-4829
RX MEDLINE; 21071242.
RX PUBMED; 11204788.
RA Hoffmann K., Qiu W.P., Moyer J.W.;
RT "Overcoming host- and pathogen-mediated resistance in tomato and tobacco
RT maps to the M RNA of Tomato spotted wilt virus";
RL Mol. Plant Microbe Interact. 14(2):242-249(2001).
XX
RN [2]
RP 1-4829
RA Hoffmann K.A., Qiu W.P., Moyer J.W.;
RT ;
RL Submitted (26-NOV-1999) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, North Carolina State University, 2610 Gardner Hall,
RL Raleigh, NC 27695-7616, USA
XX
DR SPTREMBL; Q9IKB7; Q9IKB7.
DR SPTREMBL; Q9IKB8; Q9IKB8.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4829
FT /chromosome="M"
FT /db_xref="taxon:11613"
FT /organism="tomato spotted wilt virus"
FT /isolate="D"
FT CDS 101. .1009
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IKB8"
FT /note="NSm"
FT /product="non-structural protein"
FT /protein_id="AAF80978.1"
FT /translation="MLTLFGNKRPSKSAGKDEGPLVSLAKHNGNVEVSKQWSSSDEKLA
FT LTKAMDASKGKILLNTKGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV
FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE
FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER
FT SVEEEEEGISDSVAQLSFDEI"
FT CDS complement(1338. .4745)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IKB7"
FT /product="G1/G2 glycoprotein precursor"
FT /protein_id="AAF80979.1"
FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLTFRATDAKVEIIRGDHP
FT EIYDDSAENEVPTAASIQREAILETLTNLVLESRTPGTRQIREEKLTIPISTEPATQKT
FT ISVLDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSSVSDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTNFFIPESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVIAFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDLMGLITYPVLLLINCLWKYFPFKCSNCGNLCIVTRECTKVCICNKSKA
FT SKEHSSECPILSKEADHDYNKHKWTSMEWFHLIVNTKLSLSLLKFVTEILIGLVILSQI
FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG
FT PNDCIENQNCIARPSIDNLIKCRLGCEYLDLFQNKPLYNGFSDYTESSLGLTSVGLYEA
FT KRLRNGIIDSYNRTDKISGMIAGDSLDKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHHEVSEEYTTAPIQSTHTDFYPTCIGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDIDKSYRIYSVL
FT KSTIVADVCISGILGGQCSRITEEVPYENTLFQADIQSDLHNDGITIGELIAHGPDSHI
FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAATGKKSVTIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKSFSLGELKIVVDLPSDLFKVVPKKPSITSTSL
FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP
FT DKKKMTLYPEGNPDIPVEVLVNNVIIEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRVVLLIAFIFLVIYFCSILTSICKGYVKHKSYKSRSKIEDD
FT DEPEIKAPMLMKDTMTRRRPPMDFSHLV"
XX
SQ Sequence 4829 BP; 1545 A; 867 C; 852 G; 1565 T; 0 other;
AF208497 Length: 4829 December 21, 2001 14:56 Type: N Check: 8931 ..
1 agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat
51 caatcaacta cattacacaa gctcctctac cttgggctgt tgaactcaaa
101 atgttgactc ttttcggtaa caagaggcct tctaagtctg ccggaaagga
151 tgaaggtcct ttagtttcac ttgctaaaca taatggcaat gttgaagtct
201 caaaacaatg gtcttcttct gatgaaaagc ttgctttaac caaagccatg
251 gatgcatcca aaggaaagat actgttgaac actaagggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt
351 ctgctagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaacgg aaagcaaaat gctaataagg ttatcaagat
451 ctgtccaact tgggacagca gaaaacaata catgatgatt tccaggattg
501 tgatatgggt ctgccccact ataccaaacc ctacagggaa acttgtggtt
551 gctttagttg atcccaacat gccatctgaa aagcaagtca tcctgaaggg
601 tcaagggaca ataactgatc ctatctgctt tgttttttat ctgaactggt
651 ctattccaaa gatgaacaac accccagaaa actgttgtca gctgcatttg
701 atgtgcagcc aagaatacaa gaaaggggtt tcttttggta gtgtcatgta
751 ttcttggaca aaagagtttt gtgattcacc cagagctgat aaagacaaaa
801 gttgtatggt tatacctcta aacagggcca ttagagctag gtctcaagca
851 ttcattgaag cctgcaagct gataattcct aaaggaaaca gtgagaagca
901 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg
951 aagaagaaga ggaagggatt tctgacagtg ttgctcagtt atcctttgat
1001 gaaatatagt ttttttaaaa acacttattt aagcttaaat ttctgtctat
1051 tttgcatttc gaatccaaaa aaccgaaaca aaaaacaaaa aacaaaaaaa
1101 gaaaaaacaa acaaaaaaaa tcaaaccaaa aaacaaaaac aaaataaggc
1151 tgaaaagcca aactttggtc cgaagactct ttttgttgtt ttttgtttat
1201 ttgtattttt tgtttgttgt ttttgtttat ttcatatttg ctttttatta
1251 gtcaatgatt gattctaaag atttttatat atataaaatc ctgttaatat
1301 agaagattga atcaaattta atctgtgaca agcatcctca gacaaggtga
1351 gagaaatcca taggtggcct tcgtcttgtc attgtatctt tcattaacat
1401 aggggctttg atctcaggtt catcatcatc ctctatcttg gatctagatt
1451 tataagattt atgctttaca tatcctttac aaatggatgt cagaatagaa
1501 cagaaataaa tcacaaggaa aatgaatgca ataagcagta ccactctgat
1551 agtatcaaaa aatgagccaa agtaacttgc aatgaaattg aatggacttt
1601 taatataatc ccagaagccc catgcagaag aatcagaatt atattgttgt
1651 tcttcatgag catactcatc attctgatct attatattct ctggttcttc
1701 tataataaca ttattaacca aaacttccac aggtatatct ggattgcctt
1751 ctggatacag tgtcatcttc ttcttgtccg ggttggctga acaaaacatt
1801 gttatattgt atttattaga tcctttttta acagccagct gataagtaga
1851 taaagagcaa gcgtctatag aaattgcagt agaaaatgtc aaatctgaga
1901 aaaattctaa aatgcaagat aaaccttggc cgcatagaag acagccgttg
1951 caatttaagc ttgttgaagt tatagaaggt tttttaggaa caactttaaa
2001 aagatcagat ggaagatcaa ctacgatttt cagttcccct aaactaaaag
2051 atttttccag gaaaaaacta gagaaatctt tgaaactaac aggaatatct
2101 gatatttgct ctaaaccaga tctaaacctg tatgtgtcat atccacatgt
2151 tttaatagtg actgattttt tccctgttgc tgcacaatcc caagacatgt
2201 catctccttc tagagttttc ttagtaaaaa taggcactcc atcatgggtc
2251 aattgcggat gaccaaacat tttcacagga tcattcaagt ttgcaatatt
2301 tccagagtaa atatggctgt caggtccatg agctattagt tcacctatag
2351 tgataccatc attatgcaaa tctgactgta tatcagcttg aaacaatgta
2401 ttttcataag gaacttcttc agtaatcctt gagcattgtc ctcccaaaat
2451 accagaaata caaacatctg ctactatagt tgatttgagc actgaataaa
2501 ttctatatga tttgtcgata tcataaatat ttcgacagaa tccgcatgta
2551 gcaccctcat taattgcaaa acaccaagct tcttcacatc cccagtaaga
2601 agttggtgtt atacaaaaat cttggaaacc tgttaaagct tgatttttcc
2651 tgcaagtgtc gcagtttcct atacaagtgg gataaaaatc cgtatgggtg
2701 ctttggatgg gagctgttgt atattcttct gacacttcat gatgaattcc
2751 cacacttttg atataaatca caaatttttt ggctgtttct gaggtcttgt
2801 catttagcat gaatatagtt cctcctcctc ccaaaagaga ttgttctatc
2851 atatatctat atttcccgtc tacaacagaa tcaaagatta atgattgcct
2901 gggcaggatg ttctctggta tgcttgtttc atttttgtct aaagagtctc
2951 ctgcaatcat tccagaaatt ttgtctgtac gattatagga atctattata
3001 ccatttctca atctcttagc ctcatacaga ccaactgatg ttaaccctaa
3051 agagctttct gtataatctg aaaacccatt gtacaaaggt ttgttctgaa
3101 ataaatctag gtattcgcaa cctaatctgc attttataag attatcaata
3151 gatgggcgtg caatgcaatt ctggttctct atgcaatcat taggaccttc
3201 tataacaata ttagtgccaa agatactttc tatgatcttg tcttctttta
3251 cattgcagta acattgatct ttttcagggc atttttcaaa tttgcttgta
3301 accaaaaatg gacagcctgg aacataaaag catccactca aacattgggt
3351 tgtttgagcc atagacatgg gaatctgaga caaaatgact aaacctatca
3401 aaatttcggt cacaaatttt agcaaactca agctcagctt agtgttcact
3451 attagatgga accattccat gctagtccac ttatgtttgt tgtagtcatg
3501 atctgcctct ttggacaata tgggacactc tgaagaatgc tcttttgaag
3551 ctttgctttt gttgcaaatg cagactttag tacactcacg tgtgactatg
3601 cacaaattgc cgcagttaga acatttaaat gggaaatatt tccataagca
3651 atttatgagc aataagacag ggtatgtgat caagcccata agatcatacc
3701 agagaaagag aggtttagtc gtcttgttca ctaaccatcg gatagggaaa
3751 tagatcaaca aagctatcaa tatcaatctt atccaagaaa aattgatgca
3801 ggctgtttgc ttgtaaatac tttttgaata tttgattatg caatctctga
3851 ctcttttgtt tgtttttggt attttagctg atttgtcacc gcacaagaga
3901 ttgtgttcac catccaacat ttcctcggta aaagtgatac ttgctgatcc
3951 agaaaaagct ataaccttgt gttccacatt ttcaccaggt ttttttatca
4001 aataacccat gatcttctca gggctagtga tgctcacagt atagggattt
4051 gcaaagtttg atttagttat tttgcagtca ccagataact ttacagtttg
4101 taatgatact gttccattag tggggtatga gttgtaagtt ataggataat
4151 tatcttgtgt caggctctct ggaatgaaga aatttgttcc tactgaaaaa
4201 tgtcttttgt tgtcaagttt ggtaatagga ataactggga ctttggagaa
4251 tctctttggc aaatttaaag aattatcaca tttttctaaa ccttctgctg
4301 aatcagaaac actggaatat atgacaccat tgttttcaac ttgataataa
4351 acattataag tagatatccc ttttatctca catttcaatg aggaagcatt
4401 caagcagttg ttgggaagat ccaaaacaga gattgttttt tgcgttgctg
4451 gctcagtgga aatagggatg gttaattttt cttctcgtat ctgacgggtt
4501 ccaggagtcc gagattctag caccagatta gttaaagtct ccaagatagc
4551 ttcgcgttga atcgatgcag cagtgggtac ctcattctca gcagaatcat
4601 cataaatctc aggatgatct ccacgaatta tttctacttt agcatctgtg
4651 gctctgaagg tcaagaatgc caacaaaaca gaactcaggg caattgtgaa
4701 aagactcact tttaccacta gttctagtag ttttagaatt ctcatcttag
4751 atgtctaccc agattacaat ggttgtgtga ttaatttcaa gatgtctgga
4801 ttaaggtttt tgtttgcact gattgctct