Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate Regular2A M segment G1/G2 glycoprotein precursor and non-structural protein genes, complete cds.
ACC No: AF208498
Dated: 2001-05-05 | Length: 4769 | CRC: -1811253017
!!NA_SEQUENCE 1.0
ID AF208498 standard; RNA; VRL; 4769 BP.
XX
AC AF208498;
XX
SV AF208498.1
XX
DT 06-JUL-2000 (Rel. 64, Created)
DT 05-MAY-2001 (Rel. 67, Last updated, Version 2)
XX
DE Tomato spotted wilt virus isolate Regular2A M segment G1/G2 glycoprotein
DE precursor and non-structural protein genes, complete cds.
XX
KW .
XX
OS tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-4769
RX MEDLINE; 21071242.
RX PUBMED; 11204788.
RA Hoffmann K., Qiu W.P., Moyer J.W.;
RT "Overcoming host- and pathogen-mediated resistance in tomato and tobacco
RT maps to the M RNA of Tomato spotted wilt virus";
RL Mol. Plant Microbe Interact. 14(2):242-249(2001).
XX
RN [2]
RP 1-4769
RA Hoffmann K.A., Qiu W.P., Moyer J.W.;
RT ;
RL Submitted (26-NOV-1999) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, North Carolina State University, 2610 Gardner Hall,
RL Raleigh, NC 27695-7616, USA
XX
DR SPTREMBL; Q9IKB5; Q9IKB5.
DR SPTREMBL; Q9IKB6; Q9IKB6.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4769
FT /chromosome="M"
FT /country="USA: Hawaii"
FT /db_xref="taxon:11613"
FT /organism="tomato spotted wilt virus"
FT /isolate="Regular2A"
FT CDS 101. .1009
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IKB6"
FT /note="NSm"
FT /product="non-structural protein"
FT /protein_id="AAF80980.1"
FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA
FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKIYPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV
FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE
FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER
FT SVEEEEEGISDSVAQLSFDEI"
FT CDS complement(1278. .4685)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IKB5"
FT /product="G1/G2 glycoprotein precursor"
FT /protein_id="AAF80981.1"
FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP
FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKI
FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNDVIYSCVSDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNRGNLCIITHKCTKLCICNKSKA
FT SKEHSLECPILSKETDHGYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLIILSQM
FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPERDQCYCNVKEDKIIESIFGTNIIIEG
FT PNDCIENQNCAANPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSIGLYEA
FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL
FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI
FT YSGNIANLNDPVKMFGHPQLTRDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKKPSITSTSL
FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP
FT DKKKMTLYPEGNPDISVEVLVNNVIVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKIEDD
FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV"
XX
SQ Sequence 4769 BP; 1534 A; 849 C; 843 G; 1543 T; 0 other;
AF208498 Length: 4769 December 21, 2001 14:56 Type: N Check: 527 ..
1 agagcaatca gtgcatcaga aatataccta ttatacattt tgctaagaat
51 aaatcaatta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactc ttttcggtaa taaagggtct tctaagtctg ccagaaagga
151 tgaaggtcct ttagtttcac ttgctaaaca taatggtaat gttgaagtct
201 ctaagccatg gtcttcttct gatgaaaagc ttgctttgac taaagcaatg
251 gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt
351 ctgcaagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaacgg gaagcaaaac gcaaataagg tcatcaagat
451 ctatccaact tgggacagca gaaaacaata catgatgatt tccaggattg
501 tgatatgggt ctgccccact ataccaaacc ctacagggaa acttgtggtt
551 gccctggttg atcccaacat gccatctgaa aagcaagtca ttctgaaggg
601 tcaggggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt
651 ctattccgaa aatgaataac actccagaaa actgctgtca gctgcatttg
701 atgtgcagcc aagagtacaa gaagggggtt tcttttggta gtgtcatgta
751 ttcctggaca aaggagtttt gtgattcacc cagagctgat aaagataaaa
801 gttgcatggt catacctcta aacagagcta ttagagctag atctcaagca
851 ttcatcgagg cttgcaagct gataattcct aaagggaaca gtgagaagca
901 gattaaaaaa cagcttaaag aattaagctc taatcttgag agatcagttg
951 aagaagaaga ggaagggatt tctgatagtg ttgctcagtt atcttttgat
1001 gaaatatagt acttttaatg tcacttattt aagcttaaat ttctgttaat
1051 tttgcatttt aaatcaaaaa ccaaaacaaa aaacaaaaga aaaaacaaaa
1101 aatcaaaaac aaaaaaacaa aaacaaataa ggctgaaaag ccaaactttg
1151 gtccgaagac tctttttgtt gttttttgtt catttatata ttttttgttt
1201 gttttttgtt tattttatat atacataatc tgactaatgc agaagattga
1251 atcaaattta gcctgtgaca agcagactca gacaaggtga gagaaatcca
1301 taggtggcct tcgtcttgtc attgtatctt tcattaacat aggggctttg
1351 atctcagaat catcatcatc ctctatcttg gatctagatt tataagattc
1401 attcttgaca tatcctttac aaatggttgt tagaatagaa caaaaataaa
1451 tcacaaggaa aatgaatgca ataagcaata tcactctgat agtatcaaaa
1501 aatgagccaa aataacttgc aatgaaattg aatgggcttt taatataatc
1551 ccagaagccc catgctgaag aatcagaatt atattgttgt tcttcatgag
1601 catactcatc attttgatct attatgttct ctggttcttc tacaataaca
1651 ttattgacca gaacttccac agaaatgtcc ggattgcctt ctggatacaa
1701 cgtcattttc ttcttgtcag gattagcaga acaaaacatt gttatgttgt
1751 atttattaga tcctttttta acagccagct gataagtaga tagagagcaa
1801 gcatctatag aaattgcagt agaaaatgtc aaatctgaga aaaattctaa
1851 aatgcaagat aaaccttgac cgcatagaag acagccattg caatttaagc
1901 ttgttgaagt tatggaaggt ttcttaggag caactttaaa aagatcagat
1951 ggaagatcaa cgacaatttt gagtttccct aaactgaaag ctttttccaa
2001 gaaaaaacta gagaaatctt tgaaactaac gggaatatct gatatttgct
2051 ctaaaccaga tctaaatctg tatgtatcat atccgcatgt tttaatagtg
2101 attgattttt tccctattgc tgcacaatcc caagacatgt catctccttc
2151 tagagttttc ttagtaaaaa taggcactcc atcacgagtc aattgtgggt
2201 gaccaaacat tttcacagga tcattcaagt ttgcaatatt tccagaataa
2251 atatggctgt caggtccatg agctatcagt tcacctatag tgataccatc
2301 attgtgcaaa tctgcttgta tatcagcttg aaacaaggca ttttcataag
2351 gaacctcttc agtaatcctt gagcactgac ctcctaaaat acctgaaata
2401 caaacatctg ccactatagt tgattttagc actgaataaa ttctgtatga
2451 tttatccatg tcatagatat tccgacagaa tccgcatgta gcaccttcat
2501 taattgcaaa acaccaagct tcttcacatc cccaataaga agttggtgtt
2551 atacaaaaat cttggaaacc agttaaagct tgattttttc tgcaagtgtc
2601 acagtttcct gtacaagtgg aataaaaatc tgtgtgagtg ctttggatag
2651 gagctgttgt gtatttttct gaaacttcat aatgaattcc cacacttttg
2701 atataaatca cgaatttttt tgctgtttcc gaggtcttat catttaacat
2751 gaatatagtc cctccccctc ctaaaagaga ttgttctatc atgtatctat
2801 atttcccgtc tacgacagaa tcaaagatca atgattgtct aggcagaatg
2851 ttctctggta tgcttgtttc gtttttgttt agagaatctc ctgcaatcat
2901 tccagaaatt ttgtctgtac gattataaga atctattata ccattcctca
2951 atctcttagc ctcatacaga ccaatcgatg ttaaccctaa agagcttcct
3001 gtataatctg aaaacccatt atataaaggt ttgttccgaa ataaatctag
3051 gtactcgcaa cccagtctgc attttataag attatcaata gatgggtttg
3101 cagcacaatt ctggttctct atgcaatcat taggaccttc tataataatg
3151 ttagtgccga agatactttc tataatctta tcttctttca cattacagta
3201 acattgatct ctttctgggc atttttcaaa tttgcttgta accaaaaatg
3251 gacagcctgg aacataaaaa catccactca aacattgggt agtttgagcc
3301 atagacatgg gcatttgaga caaaatgatc aaacctatta agatttcagt
3351 cacaaatttc agcaaactaa agctcagttt agtgttcact attagatgga
3401 accattccat gctagtccac ttgtgtttgt tgtagccatg atctgtttct
3451 ttggacaata tgggacactc taaagaatgt tcttttgaag ctttgctttt
3501 gttgcagatg caaagtttag tacatttatg tgtgattatg cacaaattgc
3551 cacggttaga acatttaaat gggaaatatt tccataagca atttatgagc
3601 aacaaaatag ggtatgtgat caagcctata agatcatacc agagaaagag
3651 gggtttggtt gtcttgttta ctaaccaccg gatagggaaa tagatcaaca
3701 aagctatcaa tattaatctt atccaagaaa aattgatgca ggctgtttgt
3751 ttataaatgc tttttgaata tttgattatg caatctctaa ctcttttgtt
3801 tgtttttggt attttagctg atttgtcacc gcacaagaga ttgtgctcac
3851 catccaacat ttcttcagta aaagtgatgc ttgctgatcc agaaaaggat
3901 atgaccttgt gttccacatt ttcaccaggc ttttttatca aataacccat
3951 gatcttctcg gggctagtga tgctaacagt atagggattg gcaaagttcg
4001 atttagttat tttgcagtca ccagataact ttacagtttg taatgatact
4051 gtcccattag taggatacga gttataagtt ataggataat tatcttgtgt
4101 cagactttct gaaatgaaga attttgttcc aactgaaaaa tgccttttgt
4151 tgtcaagttt ggtaatggga ataaccggga ctttggaaaa tctctttggc
4201 agatttaaag aattgtcaca tttttctaaa ccttccgctg aatcagaaac
4251 acaggaatat atgacatcat tattttccac ttgataataa acattataag
4301 tggatatccc ttttatctca cattttaatg aagaagcatt caagcagttg
4351 ttagggagat ccgagacaga gattattttt tgcgtagtcg actcagcaaa
4401 aatagggatg gttgattctt cttctcgtat ctgacgggtt ccaggagtct
4451 gagattctag catcagatta gtcaaagtct ccaagatagc cttgcgttga
4501 atcgatgcag cagtgggtac ttcattctca gcagaatcat cataaacctc
4551 tggatggtct ccacgaatta tctctacttt ggcatctgtg gctctgaaga
4601 tcaagaatgc caacaagaca gaactcaggg caattgtgaa aagactcact
4651 tttaccacta gttctagtag ttttaaaatt ctcatcttaa acgtctgctc
4701 ggattataat ggttatatga ttaatttcaa gatgtctgga ttaaggtttt
4751 tgtttgcact gattgctct