Sequence of DPV Barley yellow dwarf virus-PAS
Barley yellow dwarf virus-PAS PAV-129, complete genome.
ACC No: AF218798
Dated: 2003-04-22 | Length: 5695 | CRC: 354428138
!!NA_SEQUENCE 1.0
ID AF218798 standard; RNA; VRL; 5695 BP.
XX
AC AF218798;
XX
SV AF218798.2
XX
DT 19-JAN-2000 (Rel. 62, Created)
DT 22-APR-2003 (Rel. 75, Last updated, Version 2)
XX
DE Barley yellow dwarf virus-PAS PAV-129, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus-PAS
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5695
RA Beckett R.J., Miller W.A.;
RT "Sequences of novel luteovirus and polerovirus isolates";
RL Unpublished.
XX
RN [2]
RP 1-5695
RA Beckett R.J., Miller W.A.;
RT ;
RL Submitted (23-DEC-1999) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Iowa State University, 474 Bessey Hall, Ames, IA 50011,
RL USA
XX
RN [3]
RC Sequence updated to remove 2 terminal N's
RP 1-5695
RA Beckett R.J., Miller W.A.;
RT ;
RL Submitted (21-APR-2003) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Iowa State University, 474 Bessey Hall, Ames, IA 50011,
RL USA
XX
DR GOA; Q9J1A7; Q9J1A7.
DR GOA; Q9J1A8; Q9J1A8.
DR GOA; Q9J1A9; Q9J1A9.
DR SPTREMBL; Q9J1A4; Q9J1A4.
DR SPTREMBL; Q9J1A5; Q9J1A5.
DR SPTREMBL; Q9J1A6; Q9J1A6.
DR SPTREMBL; Q9J1A7; Q9J1A7.
DR SPTREMBL; Q9J1A8; Q9J1A8.
DR SPTREMBL; Q9J1A9; Q9J1A9.
XX
CC On Apr 21, 2003 this sequence version replaced gi:6715477.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5695
FT /db_xref="taxon:228581"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Barley yellow dwarf virus-PAS"
FT /serotype="PAV-129"
FT CDS join(139. .1155,1155. .2744)
FT /codon_start=1
FT /db_xref="GOA:Q9J1A8"
FT /db_xref="SPTREMBL:Q9J1A8"
FT /note="low-abundance product derived from -1 ribosomal
FT frameshift"
FT /product="RNA-dependent RNA polymerase P1-P2 fusion
FT protein"
FT /protein_id="AAF26429.1"
FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEFALKEDEIEEARSLMRLLTAQKAKTGVVEAWTD
FT FFVKSRGGVYAPLSCEPSKAELEAKADKLERLLEDMHKFEVQAAKKYIKEKGRGFINCW
FT NDLRSRLKLVKEVNEEAKDNIKAASKIGVEFSAPTNIQDLYAFTKVEKVETGLMKEVTK
FT MVHGEETKHMEPITEDMRSIKDTAEDREAASKWITEVVKLKNSTLSADELSLATIARYV
FT ENIGEKYKLDIASKTYLKQCAMMSVPIPTQKDIKMKMVIQSPAARAARERVAVLDSQGF
FT LEGLCAASGFESPFSLLRLPEIKVTDGARLRKVSSNIRYLTQTHLGLVYKAPNASLHNA
FT LVAVERRVFTVGKGDKAIYPPHPEHDIFTETMDYFAESIIDKVGYCKTYPAQQLALSYS
FT AGKRSQYFKAIESLKKEPYQQKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT
FT RLKFNEKKIMHAIDSVFRSPTVLSGYDNFTQGRIIASKWQKFASPVAIGVDASRFDQHV
FT SEQALKWEHGIYNGIFGDTELATALEHQLVNNIKMFVEDKMLSFQVRGHRMSGDINTSM
FT GNKLIMCGMMHAYFKMLGVEAELCNNGDDCVIITERANEKLFDGMYDHFLKYGFNMVTE
FT APVYELGELEFCQSKPVRIDGKYRMVRRPDCIGKDSCTLLSMLNEADVKSYMSAVAQCG
FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFKETPITSDNR
FT MSYWESFGVDPKIQQLVERYFDDLTVSAQLQSVKVTSPHLQSILLSIPENNSQNEY"
FT CDS 139. .1161
FT /codon_start=1
FT /db_xref="GOA:Q9J1A9"
FT /db_xref="SPTREMBL:Q9J1A9"
FT /note="ORF1"
FT /product="RNA-dependent RNA polymerase P1"
FT /protein_id="AAF26424.1"
FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEFALKEDEIEEARSLMRLLTAQKAKTGVVEAWTD
FT FFVKSRGGVYAPLSCEPSKAELEAKADKLERLLEDMHKFEVQAAKKYIKEKGRGFINCW
FT NDLRSRLKLVKEVNEEAKDNIKAASKIGVEFSAPTNIQDLYAFTKVEKVETGLMKEVTK
FT MVHGEETKHMEPITEDMRSIKDTAEDREAASKWITEVVKLKNSTLSADELSLATIARYV
FT ENIGEKYKLDIASKTYLKQCAMMSVPIPTQKDIKMKMVIQSPAARAARERVAVLDSQGF
FT "
FT CDS 2858. .4810
FT /codon_start=1
FT /db_xref="GOA:Q9J1A7"
FT /db_xref="SPTREMBL:Q9J1A7"
FT /note="translated from subgenomic RNA1 as a fusion protein
FT via read-through of the coat protein (P3) stop codon; may
FT play a role in systemic movement"
FT /transl_except=(pos:3458. .3460,aa:OTHER)
FT /product="aphid transmission protein P5"
FT /protein_id="AAF26427.1"
FT /translation="MNSVGRRGPRRANQNGPRRRSRRTIRPVVVVQPNRAGPRRRNGRR
FT SGRRGPNSIPGSTGRTEVFIFSVDNLKANSSGTIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVKFQSHASAATSGAIFVELDTACKQSALGSYINSFTISKTASKSFRAEAINGKEF
FT QESTIDQFWLLYKANGTTTDTAGQFIITINVSMLTPKXVDSSTPEPKPAPEPTPAPQPT
FT PTPQPTPEPTPAPVPKRFFEYVGTPTGVISTRENSDSISVSKLGGQSMQYIENEKCESK
FT VIDSFWSTNNNVSAQAAFVFPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS
FT SGDNWGIGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDGVISFHVDATGT
FT DACFYLAAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTFDESDVEAERIARHSETPAR
FT HNHILLSESYEEPLPTIIDQGLCDVKTPEQEIVKVDEEDRQTVSTEPDIALQEYEAATA
FT EIPDAEEDVLPSKEQLSVKPVDSSGTPLPKSKEPEVLGTYQGMNIYPEDVPPVARQKLR
FT EAAKAPSTMLYDKAPKGSKSILSRFVEGNRSKATPAAPTVSTTSNMTREQLREYTRIRN
FT SLGVTAAKEYKAQFQ"
FT CDS 2858. .3460
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9J1A6"
FT /note="ORF3; translated from subgenomic RNA1; occasional
FT read-through of stop codon produces P3-P5 fusion protein"
FT /product="coat protein P3"
FT /protein_id="AAF26425.1"
FT /translation="MNSVGRRGPRRANQNGPRRRSRRTIRPVVVVQPNRAGPRRRNGRR
FT SGRRGPNSIPGSTGRTEVFIFSVDNLKANSSGTIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVKFQSHASAATSGAIFVELDTACKQSALGSYINSFTISKTASKSFRAEAINGKEF
FT QESTIDQFWLLYKANGTTTDTAGQFIITINVSMLTPK"
FT CDS 2901. .3362
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9J1A5"
FT /note="ORF4; translated via leaky scanning on subgenomic
FT RNA1"
FT /product="movement protein P4"
FT /protein_id="AAF26426.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAQEEEGQILYLDQQA
FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSFSHTRPPL
FT RRALSLLNSTPRASNQPWVATLIPSPSAKLPPSPSEPRRLMGRNSKNQR"
FT CDS 4940. .5059
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9J1A4"
FT /note="ORF6; highly variable sequence among BYDV isolates"
FT /product="P6 protein"
FT /protein_id="AAF26428.1"
FT /translation="MDDLHVIAVCMLAMTTFTAVGVVLGCCIGCIEALCGSKR"
XX
SQ Sequence 5695 BP; 1667 A; 1402 C; 1360 G; 1266 T; 0 other;
AF218798 Length: 5695 May 13, 2003 09:04 Type: N Check: 1098 ..
1 tgaaggttga ccacctacac aaaaagactt tgtgcttgaa gtctacaacc
51 cacctgtttt gtattcagga agttgtctgc aacaacggtc aacagtacgt
101 ctgacaccgt actgccccct cccccccccc ccgccaacat gcttcttttt
151 gaacttttga tcggcgctag cgtcaaagct gtaaaagact tcatcagcca
201 ctgctactcc agactaaaaa gcatatatta tgctttcaaa agatggttga
251 tggagatctc tgggcaattt aaggcccacg acgcttttgt caacatgtgc
301 ttcgggcaca ttgctgacat cgaagacttc gaggcggaac tcgctgaaga
351 gttcgccttg aaggaggatg aaatcgagga ggcgagaagc ctcatgcgtc
401 tgctcaccgc ccaaaaagca aaaactgggg tggtggaggc ttggaccgac
451 ttctttgtga agtcgagagg cggggtttat gccccgcttt cctgcgagcc
501 ttccaaagca gagcttgagg ccaaagccga caagctcgaa agactacttg
551 aggacatgca caaatttgag gtgcaagcgg caaaaaaata cataaaagaa
601 aagggccgcg ggttcatcaa ctgctggaac gaccttcgtt ccagactcaa
651 gttagtcaag gaggtaaatg aagaggccaa agacaacatc aaggccgcct
701 ccaagatcgg cgtggaattc tccgcaccca ccaacatcca ggacctctac
751 gccttcacca aggttgaaaa ggtcgagact ggcctcatga aggaggtcac
801 caaaatggtg cacggagaag aaaccaagca catggagccg ataactgaag
851 acatgcgctc catcaaggac accgcggaag accgagaggc cgcctccaag
901 tggataacgg aggtggttaa attgaaaaat tcaaccctgt ctgccgacga
951 gctgtccctg gccaccatcg cccgatatgt ggaaaacatc ggggaaaaat
1001 acaagctcga cattgcctcc aaaacatatc tcaagcaatg cgcaatgatg
1051 tctgttccaa ttcctactca aaaagacatc aaaatgaaga tggtgatcca
1101 gagccctgca gcacgagctg cgcgtgagcg cgtagctgtg cttgattctc
1151 agggttttta gaggggctct gtgccgcctc cggttttgaa agtccctttt
1201 ctctattaag actgccggag attaaggtca cagacggagc ccgtttacgt
1251 aaggttagta gtaatattag gtacctaacc caaacccacc tcggcttggt
1301 atacaaagcc ccaaatgcct ccctgcacaa tgccttggtt gcagtggaga
1351 gaagagtgtt tacagtagga aagggggaca aagctatata ccccccccac
1401 ccggaacatg acattttcac tgagactatg gactacttcg cagagtccat
1451 aattgacaag gtgggatact gtaaaacata ccctgcacag caattagctc
1501 ttagttatag tgcagggaag cggtcacaat acttcaaagc catagagtct
1551 ctcaagaagg aaccttatca acaaaaggac tctaatgtgc aggcattcct
1601 caagaaggag aagcattgga tgaccaaagc catcgccccg cgcctaatct
1651 gcccccgctc taagcggtac aatatcatcc ttggaactcg tttaaaattc
1701 aacgagaaga agatcatgca tgctatcgat agtgtgttta gatcccccac
1751 tgtgctttct ggctatgaca acttcactca aggaagaatc atagccagca
1801 agtggcaaaa gtttgcatca cccgttgcta tcggtgttga tgctagccgc
1851 ttcgaccaac acgtgtctga gcaggcgctt aagtgggaac acgggatata
1901 caatggcata tttggcgaca ctgaattggc cactgctctc gaacatcaac
1951 ttgtaaataa tatcaaaatg ttcgttgagg acaagatgct ttcatttcaa
2001 gtgagaggcc acagaatgtc cggggatata aacaccagca tgggaaacaa
2051 actgataatg tgtggcatga tgcacgcata ctttaaaatg ctgggtgttg
2101 aagctgaact gtgcaacaat ggggacgact gtgtcatcat cactgagaga
2151 gccaatgaga agctctttga tggcatgtac gaccacttcc taaagtacgg
2201 cttcaacatg gtgacggaag ccccagttta cgaactcggg gagcttgaat
2251 tttgtcaatc aaaacccgtc agaatagatg gcaaatacag gatggtgagg
2301 agaccagact gtattgggaa agatagctgc acacttctga gcatgttgaa
2351 tgaagctgac gtcaagagtt atatgtcagc tgtggctcag tgtgggctcg
2401 ttctgaacgc gggtgtaccc attctggaaa gcttctaccg ctgtttgtac
2451 agaagctctg ggtacaagaa agtaagtgag gaatacatca aaaacgtcat
2501 atcatatgga acagatgaac gccttcaagg tagacgtacc ttcaaggaga
2551 cacctatcac aagcgacaat cgaatgtcgt actgggaatc attcggagtt
2601 gaccctaaga tacaacaact cgtcgagcgg tacttcgacg atcttacggt
2651 aagtgcccaa ctccaaagtg tgaaggtgac atctccacat ctgcaatcaa
2701 tcctcctctc cattccggag aacaactcgc aaaacgaata ttaattacca
2751 aatcttagcc gggtttggga tagggtttat agtaagtatt ccctgtacat
2801 tagctctcac gtactttatt tacaataaag tttcagacac cactagagag
2851 gtggtgaatg aattcagtag gccgtagagg acctagacga gcaaatcaaa
2901 atggcccaag aaggcggagc cgtagaacaa ttcggccagt ggttgtggtc
2951 caacccaatc gagcaggacc cagacgacga aatggtcgac gctcaggaag
3001 aagagggcca aattctatac ctggatcaac aggcaggact gaggtattca
3051 tattctcagt cgacaacctt aaagccaact cttccgggac aatcaaattc
3101 ggccccagtt tatcgcaatg cccagcgctt tcagacggaa tacttaagtc
3151 ctaccaccgt tacaagatca caagtatccg tgttaagttt cagtcacacg
3201 cgtccgccgc tacgtcgggc gctatctttg ttgaactcga caccgcgtgc
3251 aagcaatcag ccttgggtag ctacattaat tccttcacca tcagcaaaac
3301 tgcctccaag tccttcagag ccgaggcgat taatgggaag gaattccaag
3351 aatcaacgat agaccaattc tggctactct acaaggcaaa tgggaccact
3401 actgacaccg ctggacagtt catcataacg ataaacgtca gtatgttaac
3451 tcccaaatag gtagactcct caacaccgga accgaaacca gcaccagagc
3501 caacaccagc cccacaaccc actccaaccc cacagcccac accagaacca
3551 actcctgcac ctgtccccaa gagattcttt gaatacgtcg gaactccaac
3601 cggcgtgatt tcaacgcgag aaaactctga cagtatttct gtcagcaagc
3651 ttggtggaca atccatgcag tacatcgaga atgagaaatg tgaatcaaag
3701 gttattgatt ccttctggag caccaacaac aacgtttctg cccaggcagc
3751 attcgttttt ccagtgccag aagggtcata cagtgttaac atttcgtgtg
3801 aaggctttca atccgttgac cacatcggtg gtaacgagga tggctactgg
3851 attgggctca tcgcttactc caattcatca ggagacaact ggggaatcgg
3901 taattacaaa gggtgcagtt tcaaaaattt cttggcaaca aacacttgga
3951 gacctggcca caaagatctc aagttgaatg actgccagtt cacagatgga
4001 caaatagttg aaagggatgg cgtgatatct tttcatgtag atgcaacagg
4051 tactgacgcc tgtttctacc ttgcagcccc caagacaatg aaaactgaca
4101 aatacaacta tgttgtttcc tatggagggt acacgaacaa acggatggag
4151 ttcggtacca tatctgtgac atttgatgaa tccgatgttg aggcagaacg
4201 cattgccagg cattcagaga ccccggctcg tcacaaccat atactcctat
4251 ctgagagtta cgaagagcca ttacccacca taatcgacca aggcttgtgt
4301 gatgtgaaaa ctcccgagca agaaattgtg aaggtggatg aagaggacag
4351 acagactgtt tccactgaac ctgatatagc attgcaggaa tatgaagctg
4401 ccacagctga aatacctgat gctgaagagg acgttttgcc ctccaaggaa
4451 caactgtctg tcaaacccgt ggactcatcc ggaacaccac ttccaaaatc
4501 taaggaacct gaagtacttg gaacgtatca gggtatgaat atatacccag
4551 aggatgtgcc accggtggct cgtcaaaagc tgcgcgaggc agcaaaagcc
4601 ccttccacca tgctttacga caaggccccc aaggggagca aatcaattct
4651 gtcgcgattt gtggaaggca ataggtccaa ggcaacccct gctgctccta
4701 cagtgtcaac tacttccaat atgacaagag agcagttgcg agagtacact
4751 cgtattagaa atagtttagg tgttaccgca gcaaaagagt acaaagcgca
4801 atttcagtga agattaacac cactaacaca agccgaatcc tgggaaacag
4851 gcagaactta ggttcgtaag ctcgggtaat tggaaggtgg gctgtcaacc
4901 caccaccatc ttaccgccgc attgccttgt gtttggccga tggacgatct
4951 ccatgtcatc gctgtttgta tgcttgccat gaccactttc acagcagtgg
5001 gagttgtgct tggttgctgc attggttgta tagaagccct ctgtggcagt
5051 aaacgctaaa catgtatctc ggtctgtgcg agatgcaact caaaaacaag
5101 tagggagctt gggctcagtg agaggattaa cgaccctcag taaaggctgg
5151 tcctggtgga catgaataac ccgctatagg acgaagtgga agccaaccac
5201 tgatcaaata tggcagcttg cttatgagct gtacactgcc ccagaggata
5251 ctgggtaaac aaatctatcc acccaactcg atgaaatgag agtggaggtg
5301 gcggggtggg tgaccccgtg atgtacaccc gagcgtcagg attgaagacg
5351 tcataaaact caacgagatg agcaacactc gttaaaagtt ccccggctga
5401 tacacccagt cggcccgacc cgtaggcata ccctcgatac gaaacgaggg
5451 ttcctaggag ccaccacctg tgatgcaagg tggggtaaga gtcttagcaa
5501 gctctgtacc tgggaatgga cataaaccat agcaatccta cggcatccgg
5551 ggcgcgagct ttccgcacta ggtgaagcgt gccactggcc tgttgcaagc
5601 aatctagctc tgcttgcaac agtatccctt agaagcaatt cttcgggggg
5651 actggattct aactgccggc actcgaaaga gaagcccggc atccc