Sequence of DPV Leek yellow stripe virus

Leek yellow stripe potyvirus coat protein gene, partial cds.

ACC No: AF228415

Dated: 2001-10-24 | Length: 870 | CRC: 178033722

                !!NA_SEQUENCE 1.0
ID   AF228415   standard; DNA; VRL; 870 BP.
XX
AC   AF228415;
XX
SV   AF228415.1
XX
DT   11-JAN-2001 (Rel. 66, Created)
DT   24-OCT-2001 (Rel. 69, Last updated, Version 2)
XX
DE   Leek yellow stripe potyvirus coat protein gene, partial cds.
XX
KW   .
XX
OS   leek yellow stripe potyvirus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-870
RA   Fajardo T.V.M., Nishijima M., Buso J.A., Torres A.C., Avila A.C.,
RA   Resende R.O.;
RT   "Garlic viral complex: Identification of Potyvirus and Carlavirus in
RT   Central Brazil";
RL   Fitopatol. Bras. 26(3):619-626(2001).
XX
RN   [2]
RP   1-870
RA   Fajardo T.V.M., Nishijima M., Buso J.A., Torres A.C., Avila A.C.,
RA   Resende R.O.;
RT   ;
RL   Submitted (27-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL   Dept. de Biologia Celular, Universidade de Brasilia, Campus Universidtario
RL   - UnB, Brasilia, DF 70919-970, Brazil
XX
DR   SPTREMBL; Q9DRF7; Q9DRF7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .870
FT                   /country="Brazil"
FT                   /db_xref="taxon:42004"
FT                   /note="isolated from garlic plants"
FT                   /organism="leek yellow stripe potyvirus"
FT                   /strain="LYSV"
FT   CDS             <1. .870
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9DRF7"
FT                   /note="capsid protein forming a flexuous filament virus
FT                   particle; expressed by a polyprotein cleaved after protein
FT                   processing"
FT                   /product="coat protein"
FT                   /protein_id="AAG48241.1"
FT                   /translation="AGDELDAGTQASKNQRNNADKSIEQRSPLVSQTNLNEAKGSGSSS
FT                   GQNVNRDRDVNVGTTGTFSVPRIKQIPQKGIVIPMDGGKSILNLDHLLQYKPSQLCISN
FT                   TRATKAQFMTWKARLQEEYGVTESEMSIILNGLMVWCIENGTSPNINGVWTMMDGEEQV
FT                   EFPLRPVVEHAQPTLRQIMAHFSALAEAYIEMRNSEQAYMPRYGLQRNLTDMGLARYSF
FT                   DFYEITSRTPVRAREAHAQMKAAALRNSRPKLFGLDGNVTTTDEDTERHTAHDVNARMH
FT                   HLDGAHMQ"
XX
SQ   Sequence 870 BP; 294 A; 187 C; 217 G; 172 T; 0 other;

AF228415  Length: 870  December 21, 2001 14:57  Type: N  Check: 3644  ..

       1  gccggcgacg aactagatgc agggacacaa gcaagcaaga atcaaaggaa
      51  taacgcagac aaatctattg agcaacgaag cccactagtg tcacaaacaa
     101  atttaaacga ggcgaagggc agtgggagta gttcgggtca aaacgtgaac
     151  agagacagag atgtaaatgt cggcaccaca ggaactttta gtgtaccacg
     201  gataaaacaa atcccacaaa aaggcatagt aattccaatg gacggaggga
     251  aatcaatact caacttagac catctactac aatacaagcc aagtcaatta
     301  tgcatatcaa acactagagc cacgaaggca caatttatga cttggaaggc
     351  gaggctgcaa gaggaatatg gcgtcactga gagtgagatg agcatcattc
     401  taaatggctt aatggtgtgg tgcattgaga acgggacttc acccaatata
     451  aacggcgttt ggacaatgat ggatggcgag gagcaagtcg aatttccttt
     501  acgccctgtt gttgagcacg cacaaccaac gctacgtcag ataatggcgc
     551  acttctcagc attagcagaa gcctacattg agatgaggaa ctcagagcag
     601  gcttacatgc cgcgatatgg attacaaaga aatcttacag atatgggtct
     651  cgcacggtat tcatttgact tctatgaaat cacatcaaga acaccagtta
     701  gagcgcgcga ggctcatgca caaatgaaag cagctgcctt acgtaattca
     751  aggccaaagc tgtttggatt agacggcaac gtcacaacca cggatgagga
     801  cacggagagg cacacggcac atgacgtgaa tgcacggatg caccatcttg
     851  atggtgcgca tatgcagtga