Sequence of DPV Turnip mosaic virus

Turnip mosaic virus polyprotein gene, partial cds.

ACC No: AF228514

Dated: 2001-02-04 | Length: 1703 | CRC: 726611278

                !!NA_SEQUENCE 1.0
ID   AF228514   standard; RNA; VRL; 1703 BP.
XX
AC   AF228514;
XX
SV   AF228514.1
XX
DT   04-FEB-2001 (Rel. 66, Created)
DT   04-FEB-2001 (Rel. 66, Last updated, Version 1)
XX
DE   Turnip mosaic virus polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1703
RA   Mackenzie A.M., Gibbs A.J., Wei K.;
RT   "Isolates of Turnip mosaic virus from Australia and overseas";
RL   Unpublished.
XX
RN   [2]
RP   1-1703
RA   Mackenzie A.M., Gibbs A.J., Wei K.;
RT   ;
RL   Submitted (24-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL   Research School of Biological Sciences, Australian National University,
RL   Biology Place, Canberra, ACT 2601, Australia
XX
DR   SPTREMBL; Q99HQ4; Q99HQ4.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1703
FT                   /country="Australia"
FT                   /db_xref="taxon:12230"
FT                   /organism="Turnip mosaic virus"
FT                   /specific_host="Hirschfeldia incana"
FT   CDS             <1. .1494
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q99HQ4"
FT                   /note="contains partial NIb polymerase and complete coat
FT                   protein sequence"
FT                   /product="polyprotein"
FT                   /protein_id="AAK00710.1"
FT                   /translation="NSGQPSTVVYNTLMVILAVNYSLNRSGIPSELRDSIVRFFVNGDD
FT                   LLLSVHPEYEYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKRERIWIPTLEP
FT                   ERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEG
FT                   KAPYIAETALRKLYLDKEPAQEDLTHYLQAIFEDYEDGAEACVYHQAGETLDAGLTDEQ
FT                   KQAEKEKKEREKAEKERERQKQLALQKGQDVAPEERKRDKEVYAGTSGTFSVPRLKSLT
FT                   SKMRVPRYEKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQI
FT                   ILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPFIDHAKPTFRQIMAHFSDVAEA
FT                   YIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGA
FT                   NNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   3'UTR           1495. .1703
XX
SQ   Sequence 1703 BP; 524 A; 351 C; 438 G; 390 T; 0 other;

AF228514  Length: 1703  December 21, 2001 14:57  Type: N  Check: 672  ..

       1  aacagcgggc agccatcgac cgttgtatat aacacgctca tggtcatact
      51  ggcagtcaac tattcactca atagaagtgg aattccaagt gaattgcgcg
     101  acagcatcgt cagattcttc gtcaatggag atgatctact gctaagcgta
     151  cacccagagt atgagtatat ccttgacact atggcagaca actttcgtga
     201  actgggcctg aagtacactt tcgactcaag aaccagggaa aaaggagacc
     251  tctggtttat gtcgcaccaa gggcacaaaa gagaaagaat ttggattcct
     301  acgctcgagc cagagcgaat agtatcgatt ctggaatggg atcggtcgaa
     351  agagccatgc caccgactag aagcaatctg cgcagcgatg attgagtcgt
     401  ggggatacga caagttaact cacgagatac gcaagtttta cgcgtggatg
     451  attgaacaag ctccatttag ctccctagca caagaaggga aagctcctta
     501  catagcggaa acagcgctga ggaagctcta ccttgataag gaaccagccc
     551  aagaggatct cacccattat ttgcaagcaa tctttgagga ttatgaagat
     601  ggtgctgagg cttgtgttta tcaccaggca ggcgaaacgc ttgatgcagg
     651  tttgacagac gagcaaaagc aggcagagaa ggagaagaaa gagagggaga
     701  aggcagaaaa ggaacgagag aggcaaaagc agttggcact ccagaaaggc
     751  caggatgttg caccagaaga aagaaaacgc gacaaggaag tttacgctgg
     801  aacctctgga actttcagtg tacccagact caagagtctg acgagcaaga
     851  tgcgcgtgcc aagatacgag aaaagagtgg ctctaaatct cgatcatcta
     901  atcttataca cgccggagca gacagatcta tccaacacac gttcaacgcg
     951  aaagcagttt gacacgtggt ttgaaggtgt aatggctgat tacgaactga
    1001  cggaggacaa aatgcaaatc attctcaatg gtttaatggt ctggtgcatt
    1051  gagaacggaa cctccccgaa cataaacgga atgtgggtga tgatggacgg
    1101  cgatgatcag gtggaattcc cgatcaaacc gttcattgac cacgccaaac
    1151  ccacatttag gcagataatg gcccatttca gtgacgtagc tgaagcgtac
    1201  attgaaaagc gtaaccaaga ccgaccatac atgccacgat atggtcttca
    1251  gcgcaattta accgacatga gcttagctcg atacgcattt gacttctatg
    1301  aaatgacttc taggactcca atacgtgcga gagaggcaca catccagatg
    1351  aaagcagcag cactgcgtgg cgcaaataat aatttgttcg gcttggatgg
    1401  aaacgttggt acaacggtag agaacacgga gaggcatacg accgaggacg
    1451  ttaatcggaa catgcataac ttactgggcg ttaaggggtt atgaagttgt
    1501  atgctggtag actataagta tttaagttta ctcgttagta ttctcgctta
    1551  tgggaaatat gtaagtttgt taaagcagcc agtgtgactt cgtcatgtgt
    1601  gttgttgtta ctttctatat tttcgccgaa cattttattg gtgttagcgc
    1651  atgtggtgag gatcgtcctc gattgcctta acatttgata ggatgcaaga
    1701  gac