Sequence of DPV Rotavirus B

Human rotavirus B strain CAL segment 7 nonstructural protein NSP3 gene, complete cds.

ACC No: AF230974

Dated: 2001-10-15 | Length: 1179 | CRC: 1588917794

                !!NA_SEQUENCE 1.0
ID   AF230974   standard; RNA; VRL; 1179 BP.
XX
AC   AF230974;
XX
SV   AF230974.1
XX
DT   05-SEP-2000 (Rel. 65, Created)
DT   15-OCT-2001 (Rel. 69, Last updated, Version 2)
XX
DE   Human rotavirus B strain CAL segment 7 nonstructural protein NSP3 gene,
DE   complete cds.
XX
KW   .
XX
OS   Human rotavirus B strain CAL
OC   Viruses; dsRNA viruses; Reoviridae; Rotavirus; Group B rotaviruses;
OC   Human rotavirus B.
XX
RN   [1]
RP   1-1179
RX   MEDLINE; 21361486.
RX   PUBMED; 11468747.
RA   Kobayashi N., Naik T.N., Kusuhara Y., Krishnan T., Sen A.,
RA   Bhattacharya S.K., Taniguchi K., Alam M.M., Urasawa T., Urasawa S.;
RT   "Sequence analysis of genes encoding structural and nonstructural proteins
RT   of a human group B rotavirus detected in Calcutta, India";
RL   J. Med. Virol. 64(4):583-588(2001).
XX
RN   [2]
RP   1-1179
RA   Kobayashi N., Naik T.;
RT   ;
RL   Submitted (03-FEB-2000) to the EMBL/GenBank/DDBJ databases.
RL   Hygiene, Sapporo Medical University School of Medicine, S-1 W-17, Chuo-Ku,
RL   Sapporo, Hokkaido 060-8556, Japan
XX
DR   SPTREMBL; Q9E7C5; Q9E7C5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1179
FT                   /chromosome="segment 7"
FT                   /db_xref="taxon:106330"
FT                   /organism="Human rotavirus B strain CAL"
FT                   /strain="CAL"
FT                   /dev_stage="adult"
FT   CDS             55. .1098
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9E7C5"
FT                   /product="nonstructural protein NSP3"
FT                   /protein_id="AAG09740.1"
FT                   /translation="MALDALASILETVLRKCGINEISRITTKFEEALDDCGMKVDDWRE
FT                   AYYKERFPKRMTATTMASQIMNFEIENLQLRNKAWAEGADRKFRLLSSFEIGNKDGHTI
FT                   LVPKTRNAEILLVNSTSDLKLNSFPSEAVTRLVEEKEQLRKQIKHLRDQQTSKPTAILC
FT                   EALENMTEKMKLVEREKETVNKMFLECSRINQRLKKQIQMCEEEATDRLALVNSHHREE
FT                   TLIMKREIYRLQMENVTLKEQIDSIGKELDHSNRIIRGLANRAGLVVDEVDSGNETSDQ
FT                   SDESDHDDHENSESDLEDMMNPGEDEQIPRGGENPRRQARMLEMREEMERFHEDMEILN
FT                   LNFDLDM"
XX
SQ   Sequence 1179 BP; 439 A; 178 C; 267 G; 295 T; 0 other;

AF230974  Length: 1179  December 21, 2001 14:58  Type: N  Check: 5915  ..

       1  ggtataatta cgtttgattc agatagtact tcgggtcact gagaaacgaa
      51  cgtaatggcc ctggacgcgc tagcttcaat cttggagact gtattgcgca
     101  aatgcggtat caatgaaatt tctagaataa caaccaaatt tgaagaagca
     151  ctcgatgatt gcgggatgaa ggtggacgac tggagagagg catattataa
     201  agagcgattt ccaaagagaa tgacagcaac gactatggca tctcaaatca
     251  tgaattttga aattgaaaat ctgcaactga ggaataaagc ctgggctgaa
     301  ggtgcagatc gcaaattcag attgttgtct agttttgaaa ttggaaataa
     351  agatgggcat actattctag ttccaaagac gagaaatgct gaaatactcc
     401  tagttaactc tacatcagat ttaaagctta actcttttcc atcagaggca
     451  gttactagat tggttgaaga gaaagaacaa ttgcgtaaac aaattaaaca
     501  tttaagagat caacaaactt ctaaaccaac tgcaatttta tgtgaagctt
     551  tggaaaacat gactgagaaa atgaaattgg tcgaaagaga aaaagaaacg
     601  gttaataaaa tgtttctcga gtgtagcaga attaatcaga ggttaaaaaa
     651  acagattcag atgtgtgagg aagaagctac tgatagactg gctttggtga
     701  actctcatca tagagaggag actttaatca tgaaacgaga aatttacaga
     751  ttgcagatgg agaacgtgac attaaaagaa caaattgact ctataggaaa
     801  agaactggat cacagcaata gaattatacg aggactggcc aatagagctg
     851  gactagttgt cgatgaagta gattcaggta atgagacgtc tgaccagtca
     901  gatgaatctg atcatgatga tcatgaaaat agtgaatcag atttagaaga
     951  catgatgaat ccaggggagg acgaacagat tcctagagga ggcgaaaatc
    1001  ctagaagaca ggccagaatg ttagaaatga gagaagaaat ggaacgattt
    1051  catgaagaca tggaaatttt aaacctaaac tttgatctag acatgtagac
    1101  ctctttttcc tttatttgta gacgcgacgc ttgaccaggg ataagtattt
    1151  ggattgacca accaaagtaa taaaaaccc