Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus PAV-Ill genomic RNA, complete genome.
ACC No: AF235167
Dated: 2002-04-04 | Length: 5665 | CRC: -754781824
!!NA_SEQUENCE 1.0
ID AF235167 standard; RNA; VRL; 5665 BP.
XX
AC AF235167;
XX
SV AF235167.1
XX
DT 07-APR-2000 (Rel. 63, Created)
DT 04-APR-2002 (Rel. 71, Last updated, Version 3)
XX
DE Barley yellow dwarf virus PAV-Ill genomic RNA, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus PAV-Ill
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus; Barley yellow dwarf virus - PAV.
XX
RN [1]
RP 1-5665
RA Beckett R.J., Miller W.A.;
RT "Sequences of novel luteovirus and polerovirus isolates";
RL Unpublished.
XX
RN [2]
RP 1-5665
RA Beckett R.J., Miller W.A.;
RT ;
RL Submitted (16-FEB-2000) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Iowa State University, 474 Bessey Hall, Ames, IA 50011,
RL USA
XX
DR SPTREMBL; Q9IZF8; Q9IZF8.
DR SPTREMBL; Q9IZF9; Q9IZF9.
DR SPTREMBL; Q9IZG0; Q9IZG0.
DR SPTREMBL; Q9IZG1; Q9IZG1.
DR SPTREMBL; Q9IZG2; Q9IZG2.
DR SPTREMBL; Q9IZG3; Q9IZG3.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5665
FT /db_xref="taxon:191031"
FT /virion
FT /organism="Barley yellow dwarf virus PAV-Ill"
FT /isolate="PAV-Ill"
FT CDS 142. .1161
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IZG3"
FT /note="ORF1"
FT /product="RNA-dependent RNA polymerase P1"
FT /protein_id="AAF62524.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETIKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF"
FT CDS join(142. .1155,1155. .2744)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IZG2"
FT /note="low-abundance product derived from -1 ribosomal
FT frameshift"
FT /product="RNA-dependent RNA polymerase P1-P2 fusion
FT protein"
FT /protein_id="AAF62525.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETIKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL
FT EGLCTASGFESPFSILGLPEIAVTDGARFRKVSSNIRYLSQTHLGLVYKAPNASLHNAL
FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCRTYPAQLLANSYSA
FT GKRAMYHKAIASLKTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR
FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS
FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG
FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK
FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL
FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNQSRM
FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSHNEY"
FT CDS 2858. .3460
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IZG1"
FT /note="ORF3; translated from subgenomic RNA1; occasional
FT read-through of stop codon produces P3-P5 fusion protein"
FT /product="coat protein P3"
FT /protein_id="AAF62526.1"
FT /translation="MNSVGRRGPRRANQNGTRRKRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFVELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
FT CDS 2858. .4810
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IZG0"
FT /note="translated from subgenomic RNA1 as a fusion protein
FT via read-though of the coat protein (P3) stop codon"
FT /transl_except=(pos:3458. .3460,aa:OTHER)
FT /product="aphid transmission protein P5"
FT /protein_id="AAF62528.1"
FT /translation="MNSVGRRGPRRANQNGTRRKRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFVELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPTPQPE
FT PAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK
FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS
FT TGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT
FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIR
FT SKHILVSEQYEQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA
FT EIPDAEEDVLPSKEQLSSKPVDTSGYKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLR
FT EAANAPSTLLYERAPKKSHNFLTRFVEANRSPTTPAAPTVSTVSNMTREQLAEYTRIRK
FT SLGLTAAKEYKAQFQ"
FT CDS 2901. .3362
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IZF9"
FT /note="ORF4; translated via leaky scanning from subgenomic
FT RNA1"
FT /product="putative movement protein P4"
FT /protein_id="AAF62527.1"
FT /translation="MAQEGNAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT GLRYSCSQSITLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL
FT RPALSLLNSTPRANNQPWLATLIPSQSAGPPQRSSEPKRLTARNSRNQR"
FT CDS 4917. .5042
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IZF8"
FT /note="ORF6; translated from subgenomic RNA2"
FT /product="P6 protein"
FT /protein_id="AAF62529.1"
FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLLPPPSFRSSV"
XX
SQ Sequence 5665 BP; 1676 A; 1371 C; 1380 G; 1236 T; 2 other;
AF235167 Length: 5665 April 23, 2002 09:20 Type: N Check: 9624 ..
1 nntgaagatt gaccatctca caaaagctgt tacgcgcttg taacacacta
51 cacactcgtt ttgtattcga gaagtagttg caacaacggt ccccttattg
101 cctgacaagc tgagggccac ccttctatcc ccaccgccac catgttcttc
151 gaaatactta taggagctag cgctaaagcg gtaaaagact tcatcagcca
201 ttgttactct cgtttgaaat caatatatta ttcttttaaa cgatggctga
251 tggagatatc tgggcagttt aaggcccatg acgcctttgt caacatgtgc
301 ttcgggcaca tggctgacat tgaggacttc gaggcagaac tcgctgagga
351 gtttgccgag agggaggatg aggtagaaga ggcaagaagc ctcttgaaac
401 tgctggtcgc ccaaaaatct aaaaccgggg tgaccgaggc ttggaccgac
451 ttctttacga agtcgagagg cggcgtctat gcgccacttt cctgcgagcc
501 taccaggcag gagctagaag tcaagagcga gaagctcgaa aaacttctag
551 aagaacagca ccaattcgag gtgcgagcgg ccaagaaata catcaaggaa
601 aagggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtctcag
651 gctggtgaag gacgtcaagg acgaggcgaa ggacaacgcc aaagctgccg
701 ccaagatcgg agcagaaatg ttcgcccccg ttgacgtcca ggacctctac
751 agttttacag aggtcaagaa ggtggagacc ggcctcatga aggaggtcgt
801 gaaagagaga aacggcgaag aagagaaaca cctcgagccc atcatggaag
851 aggtgagatc tatcaaggat accgccgaag ccagggacgc cgcctccacc
901 tggataacag agacaattaa gctgaagaac tcaacgctta acgcagatga
951 gctgtctctg gccaccatcg cccgctacgt tgaaaacgta ggggacaaat
1001 tcaaactcga cattgctagc aagacatatc taaagcaagt cgcatcgatg
1051 tctgtaccca tcccaactaa taaggacatc aaattgaaga tggtgctgca
1101 gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg cttgactctg
1151 tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattct
1201 ccattctcgg gctgccagag attgcggtca cagacggagc ccggttccgt
1251 aaggttagta gtaatattag ataccttagc caaacccacc taggtcttgt
1301 atataaggca ccaaatgcct ccctgcacaa tgcgcttgta gcagtggaga
1351 gaagagtttt tacagtagga aagggggaca aagcaatcta ccccccccgc
1401 ccggagcatg acattttcac tgatacgatg gattacttcc agaaatccat
1451 tatagaagag gtgggatact gtagaacata tccagcgcaa ctcctggcta
1501 acagctatag cgcaggaaag agggccatgt atcacaaagc tattgcatca
1551 ttgaagactg tcccttatca tcagaaggat gccaatgtgc aagctttcct
1601 gaagaaggaa aaacattgga tgaccaagga catcgccccc cgattgattt
1651 gcccccgcag caagcggtac aacatcatcc taggaactcg tttaaaattc
1701 aacgagaaga agatcatgca cgctattgat agtgtgttcg gatcccccac
1751 tgtgctttct ggttatgaca actttaaaca aggaagaatc atagccaaga
1801 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc
1851 tttgaccaac acgtgtcaga gcaggcgctt aagtgggaac acgggatata
1901 caatgggatc ttcggagaca gcgaactggc tcttgcactc gaacaccaaa
1951 tcaccaacaa catcaagatg tttgttgaag acaaaatgct taggttcaag
2001 gtaagaggcc acagaatgtc cggtgacatt aataccagca tgggaaataa
2051 gcttataatg tgcggcatga tgcatgcata tttcaagaag ctgggtgttg
2101 aagctgaact ttgcaacaac ggagacgact gtgtcatcat cactgataga
2151 gccaatgaaa agctctttga tggcatgtac gaccacttcc tccagtatgg
2201 cttcaacatg gtgaccgaaa aaccagttta cgaactggag caattggagt
2251 tttgccagtc aaaaccggtc tctattaatg gaaagtatag aatggtcaga
2301 aggcccgata gcataggcaa agatagcaca acactactga gcatgctcaa
2351 tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggtctgg
2401 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat
2451 agaagctcgg ggtacaagaa agtgagtgag gaatttatta aaaacgtcat
2501 atcgtatgga acagatgaga gactacaagg tagacgtacc tataatgaaa
2551 cacctatcac aaaccaaagt agaatgtcct actgggaatc attcggagtt
2601 gaccctaaga tacagcaaat cgtcgagagg tactacgacg gtcttacggt
2651 aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa
2701 tactactttc cataccggaa aaccactcac ataacgaata ttaattatca
2751 aatcttagct gggtttggga tagggttcat agttagtata ccctgtacat
2801 tagctctcgc gtactttatt tacaataaag tttcagacac cactagagag
2851 gtggtgaatg aattcagtag gccgtagagg acctagacgc gcaaatcaaa
2901 atggcacaag aaggaaacgc cgtagaacag ttcggccagt ggttgtggtc
2951 caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag
3001 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg
3051 tgttctcagt cgataacctt aaagccaact cttccggggc aatcaaattc
3101 ggccccagtc tatcgcaatg cccagcgctt tcagacggaa tacttaagtc
3151 ctaccaccgt tacaagatca caagtatccg tgttgagttt aagtcacacg
3201 cgtccgcaac tacggccggc gctatctttg ttgaactcga caccgcgtgc
3251 aaacaatcag ccctggctag ctacattaat tccttcacaa tcagcaggac
3301 cgcctcaaag gtcttcagag ccgaagcgat taacggcaag gaattccagg
3351 aatcaacgat agaccagttt tggatgctct acaaggccaa tggaactacc
3401 actgacacgg caggacaatt cattatcacg atgagtgtca gtttgatgac
3451 ggccaaatag gtagactcct caacaccgga accgaaacct gcaccagaac
3501 caacaccaac cccacagcca gagccagccc cacagcccgc acccgaaccg
3551 actcctgcac ctgtccccaa aagattcttt gagtatatcg gcactccaac
3601 cggtacaatc tcaacaagag agaactctga cagtatttct gttagcaagc
3651 tcggtgggca gtcaatgcag tacattgaga atgagaaatg tgaaacaaag
3701 gtcattgact ccttctggag cactaacaac aacgtgtctg cacaggcagc
3751 cttcgtttac ccagtgccag aaggatcata cagtgtgaac atttcgtgcg
3801 aaggctttca atccgttgac cacataggag gcaacgagga tggctattgg
3851 attggtttaa ttgcctactc caattcgaca ggagacaatt ggggggtagg
3901 caactacaaa ggatgcagtt tcaagaactt cttggcaact aatacttgga
3951 gaccaggcca taaggatctc aagttgaacg attgccagtt cacagatgga
4001 caaatagttg aaagggatgc cgtgatgtct ttccatgtgg aagcaacagg
4051 tactgacgcc tgtttttatc tcatggctcc caaaacaatg aaaactgaca
4101 aatacaacta tgttgtctca tatggagggt acacaaacaa gcgaatggaa
4151 tttggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg
4201 cataacaagg cacgctgaaa cacccatacg ttccaaacac attcttgtgt
4251 ccgaacagta tgagcaacct ctacccacca taatcgatca aggcttgtgt
4301 gacgtgcaaa ctcccgagca agaacaaaca ctggtggatg aagaagacaa
4351 acagactgtt tccacagaac ctgatatagc actcatggaa tatgaagctg
4401 caacagccga aattccggat gctgaagagg atgtcttgcc ctccaaggaa
4451 cagctgtctt ctaaaccggt ggacacgtcc ggctacaaga tacctaagcc
4501 caaggaacct gaagtacttg gaacatacca gggacagaat atttaccctg
4551 aagacgtgcc accaattgcg cggcaaaaac tacgtgaagc cgcaaatgca
4601 ccctccacat tgctctacga gagggctccc aagaagagcc ataatttctt
4651 gactcgtttt gtggaggcga ataggtcccc taccactcca gctgccccaa
4701 cagtgtcaac tgtatcaaac atgacaaggg aacagcttgc ggagtacact
4751 agaattagga aatcccttgg actcacagca gcgaaggaat acaaggcgca
4801 atttcagtga aggtaacacc actagcacaa atcggatcct gggaaacagg
4851 cagaactacg gttcataagc tcgggtaggc cgtcaaccta ccgccgtatc
4901 gtattgtgtt tggccgatgg atgaccttca cgtaatcgcc gtttgtattt
4951 ttgctctaac tgtgttgaca gggttaggcg cggtgatcgg ctgctgtgcc
5001 ggttgccttc tcccccctcc ttccttccgc tcttctgttt aagcaaaaat
5051 ctctcggtct gtgcgggaga aactcaaaaa tatcggggag cttcggctca
5101 gtgaggggat taacgacccc cagtaaaggc tggtcttggc ggacttgaat
5151 aacccgctat aagacgaagt ggtaaccgcc actgatcaaa tggtgaacat
5201 gcttctgtgt tgtacactgc cccggagcct accgggtaaa caaggctatt
5251 ccaccagctc gatgaaatga gagtggagtg gacggagtgg gtgacttcga
5301 gatgtacacc cgatcgtcag gattgaagac gttaaaactc gacgacctag
5351 tgcaagtcgt taaactgact agggtggata caccacaccc ggcctaactt
5401 gtgggcatac ccacgatacg aaacgtgggt ctcttggagc cactacctgt
5451 gatgcaaggt agggtatgag tcttagcaag ctctgtgcca ggagatggac
5501 ataaaccata gcaatcctgc aagtcatctt ggcgaaccat aggtgaaccg
5551 tgccatgggc ctgcctaccg aaaggaaaag cagtatccaa cacagcaatg
5601 tgttgggggt tacacccttc ggggtactct taacgctgac actcgaaaga
5651 gcagttcggc aaccc